CHRNA3 (cholinergic receptor nicotinic alpha 3 subunit) - Rat Genome Database

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Gene: CHRNA3 (cholinergic receptor nicotinic alpha 3 subunit) Sus scrofa
Analyze
Symbol: CHRNA3
Name: cholinergic receptor nicotinic alpha 3 subunit
RGD ID: 13855889
Description: ENCODES a protein that exhibits acetylcholine binding (ortholog); acetylcholine receptor activity (ortholog); acetylcholine-gated monoatomic cation-selective channel activity (ortholog); INVOLVED IN activation of transmembrane receptor protein tyrosine kinase activity (ortholog); behavioral response to nicotine (ortholog); excitatory postsynaptic potential (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; nicotine pharmacodynamics pathway; nicotine pharmacokinetics pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN acetylcholine-gated channel complex (ortholog); cholinergic synapse (ortholog); dendrite (ortholog); INTERACTS WITH (S)-nicotine; carbon dioxide; dioxygen
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cholinergic receptor, nicotinic, alpha 3 (neuronal); neuronal acetylcholine receptor subunit alpha-3; neuronal nicotinic acetylcholine receptor alpha 3 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,361,899 - 47,384,303 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1747,361,710 - 47,382,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2752,787,929 - 52,806,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
CHRNA3Pigalcohol dependence susceptibilityISORGD:7326139068941DNA:missense:exons:p.R37H,p.E363D(human)RGDPMID:24057674|REF_RGD_ID:405849397
CHRNA3PigCarbon Monoxide Poisoning  ISORGD:23459068941 RGDPMID:24704181|REF_RGD_ID:151347543
CHRNA3Pigchronic obstructive pulmonary disease susceptibilityISORGD:7326139068941 DNA:SNP: :rs12910984(human)RGDPMID:23207642|REF_RGD_ID:151347538
CHRNA3Pigchronic obstructive pulmonary disease disease_progressionISORGD:7326139068941associated with smoking; DNA:SNP: :rs1051730(human)RGDPMID:26751916|REF_RGD_ID:150527850
CHRNA3Pigchronic obstructive pulmonary disease susceptibilityISORGD:7326139068941associated with smoking; DNA:SNP::rs1051730(human)RGDPMID:29993116|REF_RGD_ID:150526806
CHRNA3Pigchronic obstructive pulmonary disease susceptibilityISORGD:7326139068941associated with smoking; DNA:SNP: :rs1051730(human)RGDPMID:22441734|REF_RGD_ID:151347455
CHRNA3Pigchronic obstructive pulmonary disease susceptibilityISORGD:7326139068941DNA:SNP: :rs6495309(human)RGDPMID:23056235|REF_RGD_ID:151347536
CHRNA3Pigcocaine dependence susceptibilityISORGD:7326139068941DNA:missense:exons:p.R37H,p.E363D(human)RGDPMID:24057674|REF_RGD_ID:405849397
CHRNA3Pigdepressive disorder  ISORGD:23459068941mRNA:decreased expression:habenula:RGDPMID:28420875|REF_RGD_ID:151347550
CHRNA3PigExperimental Seizures treatmentISORGD:23459068941 RGDPMID:15469883|REF_RGD_ID:1599607
CHRNA3Piglung adenocarcinoma susceptibilityISORGD:7326139068941associated with smoking; DNA:SNP: :rs1051730(human)RGDPMID:20554942|REF_RGD_ID:150527848
CHRNA3Piglung adenocarcinoma susceptibilityISORGD:7326139068941DNA:SNP: :rs8042374(human)RGDPMID:24686516|REF_RGD_ID:151347530
CHRNA3Piglung cancer onsetISORGD:7326139068941DNA:SNP:exon 2: rs8040868(T>C) (human)RGDPMID:29416783|REF_RGD_ID:151361155
CHRNA3Piglung carcinoma susceptibilityISORGD:7326139068941DNA:SNP: :rs1051730(human)RGDPMID:24337855|REF_RGD_ID:151347533
CHRNA3Piglung non-small cell carcinoma disease_progressionISORGD:7326139068941DNA:SNP: :rs6495309(human)RGDPMID:22722785|REF_RGD_ID:151347532
CHRNA3Piglung non-small cell carcinoma susceptibilityISORGD:13434249068941DNA:SNP:exon: (rs1051730) (human) RGDPMID:21747048|REF_RGD_ID:151660346
CHRNA3Piglung small cell carcinoma susceptibilityISORGD:7326139068941DNA:SNP:cds:rs8040868(human)RGDPMID:22280835|REF_RGD_ID:151347453
CHRNA3Piglung small cell carcinoma  ISORGD:7326139068941mRNA:increased expression:lungRGDPMID:20124469|REF_RGD_ID:150527851
CHRNA3Pignicotine dependence susceptibilityISORGD:7326139068941DNA:missense:cds:p.R37H (human)RGDPMID:22042774|REF_RGD_ID:405849405
CHRNA3Pignicotine dependence susceptibilityISORGD:13434249068941DNA:SNP:exon: (rs1051730) (human)RGDPMID:21747048|REF_RGD_ID:151660346
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Original Reference(s)
CHRNA3Pigamyotrophic lateral sclerosis  ISORGD:7326138554872ClinVar Annotator: match by term: Amyotrophic lateral sclerosisClinVarPMID:25741868
CHRNA3PigBLADDER DYSFUNCTION, AUTONOMIC, WITH IMPAIRED PUPILLARY REFLEX AND SECONDARY CAKUT  ISORGD:7326138554872ClinVar Annotator: match by term: CHRNA3-related condition | ClinVar Annotator: match by term: Urinary bladder, more ...ClinVarPMID:25741868|PMID:28492532|PMID:31708116
CHRNA3PigBloom syndrome  ISORGD:7326138554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
CHRNA3Pigcolorectal cancer  ISORGD:7326138554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
CHRNA3Piggenetic disease  ISORGD:7326138554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868|PMID:28492532
CHRNA3Piglung adenocarcinoma  ISORGD:7326138554872ClinVar Annotator: match by term: Lung adenocarcinomaClinVarPMID:27993330
CHRNA3Piglung cancer  ISORGD:7326138554872ClinVar Annotator: match by term: Lung cancer susceptibility 2ClinVarPMID:18385676|PMID:18385738|PMID:18385739|PMID:28492532
CHRNA3Pigsquamous cell carcinoma  ISORGD:7326138554872ClinVar Annotator: match by term: Squamous cell carcinomaClinVarPMID:27993330
Object Symbol
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Original Reference(s)
CHRNA3Pigalcohol use disorder  ISORGD:7326139068941CTD Direct Evidence: marker/mechanismCTDPMID:18414406
CHRNA3PigLung Neoplasms  ISORGD:7326139068941CTD Direct Evidence: marker/mechanismCTDPMID:18385738
CHRNA3Pignicotine dependence  ISORGD:7326139068941CTD Direct Evidence: marker/mechanismCTDPMID:18414406|PMID:29666375
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Original Reference(s)
CHRNA3PigBLADDER DYSFUNCTION, AUTONOMIC, WITH IMPAIRED PUPILLARY REFLEX AND SECONDARY CAKUT susceptibilityISORGD:7326137240710 OMIM 
CHRNA3Piglung cancer susceptibilityISORGD:7326137240710 OMIM 


  
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Original Reference(s)
CHRNA3Pig(S)-nicotine multiple interactionsEXP 6480464Nicotine affects the reaction [[Oxygen deficiency co-treated with Carbon Dioxide] affects the expression of CHRNA3 more ...CTDPMID:28235547
CHRNA3Pigcarbon dioxide multiple interactionsEXP 6480464[Oxygen deficiency co-treated with Carbon Dioxide] affects the expression of CHRNA3 protein; Nicotine affects the more ...CTDPMID:28235547
CHRNA3Pigdioxygen multiple interactionsEXP 6480464[Oxygen deficiency co-treated with Carbon Dioxide] affects the expression of CHRNA3 protein; Nicotine affects the more ...CTDPMID:28235547
CHRNA3Pignicotine multiple interactionsEXP 6480464Nicotine affects the reaction [[Oxygen deficiency co-treated with Carbon Dioxide] affects the expression of CHRNA3 more ...CTDPMID:28235547


Biological Process
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Original Reference(s)
CHRNA3Pigacetylcholine receptor signaling pathway involved_inIBAMGI:87888|PANTHER:PTN000436077|RGD:2345150520179 GO_CentralGO_REF:0000033
CHRNA3Pigactivation of transmembrane receptor protein tyrosine kinase activity acts_upstream_of_or_withinISOMGI:21556029068941 PMID:16162937MGIPMID:16162937
CHRNA3Pigbehavioral response to nicotine involved_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigbehavioral response to nicotine acts_upstream_of_or_withinISOMGI:21556029068941 PMID:15275829MGIPMID:15275829
CHRNA3Pigexcitatory postsynaptic potential involved_inIEAGO:0022848150520179 GOCGO_REF:0000108
CHRNA3Pigexcitatory postsynaptic potential acts_upstream_of_or_withinISOMGI:21556029068941 PMID:16162937MGIPMID:16162937
CHRNA3Pigheart development  ISORGD:23459068941 RGDPMID:15549397|REF_RGD_ID:1599606
CHRNA3Piglocomotory behavior acts_upstream_of_or_withinISOMGI:21556029068941 PMID:15275829MGIPMID:15275829
CHRNA3Pigmembrane depolarization involved_inIBAMGI:106213|MGI:87888|PANTHER:PTN000436077150520179 GO_CentralGO_REF:0000033
CHRNA3Pigmonoatomic ion transmembrane transport involved_inIEAUniProtKB-KW:KW-0407150520179 UniProtGO_REF:0000043
CHRNA3Pigmonoatomic ion transmembrane transport involved_inIBAFB:FBgn0000036|FB:FBgn0000039|PANTHER:PTN000434994|RGD:2348|UniProtKB:P36544|UniProtKB:Q401N2|WB:WBGene00000042|WB:WBGene00000043|WB:WBGene00000051|WB:WBGene00000055|WB:WBGene00002974|WB:WBGene00006774|WB:WBGene00006797150520179 GO_CentralGO_REF:0000033
CHRNA3Pigmonoatomic ion transmembrane transport involved_inIEAInterPro:IPR006201150520179 InterProGO_REF:0000002
CHRNA3Pigmonoatomic ion transport involved_inIEAInterPro:IPR002394|InterPro:IPR006029|InterPro:IPR006202|InterPro:IPR036719|InterPro:IPR036734150520179 InterProGO_REF:0000002
CHRNA3Pigmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
CHRNA3Pignervous system development involved_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigneuromuscular synaptic transmission involved_inIBAMGI:87887|PANTHER:PTN000436077|UniProtKB:P02708|UniProtKB:P32297|ZFIN:ZDB-GENE-980526-137150520179 GO_CentralGO_REF:0000033
CHRNA3Pigpresynaptic modulation of chemical synaptic transmission involved_inISORGD:23459068941PMID:12065717SynGOPMID:12065717|REF_RGD_ID:13702272
CHRNA3Pigregulation of acetylcholine secretion, neurotransmission acts_upstream_of_or_withinISOMGI:21556029068941 PMID:16162937MGIPMID:16162937
CHRNA3Pigregulation of dendrite morphogenesis acts_upstream_of_or_withinISOMGI:21556029068941 PMID:11027228MGIPMID:11027228
CHRNA3Pigregulation of membrane potential acts_upstream_of_or_withinISOMGI:21556029068941 PMID:10318955MGIPMID:10318955
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Cellular Component
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Original Reference(s)
CHRNA3Pigacetylcholine-gated channel complex part_ofIBAFB:FBgn0000036|FB:FBgn0000039|FB:FBgn0015519|FB:FBgn0266347|MGI:106213|MGI:87885|MGI:87887|MGI:87888|MGI:87889|MGI:87890|MGI:87891|MGI:87893|MGI:87895|PANTHER:PTN000435923|RGD:2345|RGD:2346|RGD:2347|RGD:2349|RGD:2350|RGD:2351|RGD:2352|RGD:2353|RGD:2354|RGD:621544|RGD:69277|UniProtKB:P11230|UniProtKB:P17787|UniProtKB:P30926|UniProtKB:P32297|UniProtKB:P43681|UniProtKB:Q15822|ZFIN:ZDB-GENE-030131-3805|ZFIN:ZDB-GENE-040108-2|ZFIN:ZDB-GENE-040808-32|ZFIN:ZDB-GENE-060811-1|ZFIN:ZDB-GENE-070821-4|ZFIN:ZDB-GENE-090505-3|ZFIN:ZDB-GENE-120809-1|ZFIN:ZDB-GENE-980526-137150520179 GO_CentralGO_REF:0000033
CHRNA3Pigacetylcholine-gated channel complex part_ofIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigacetylcholine-gated channel complex  ISORGD:23459068941 RGDPMID:20796176|REF_RGD_ID:8549534
CHRNA3Pigcation channel complex part_ofIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigcholinergic synapse is_active_inISORGD:23459068941PMID:3380297SynGOPMID:3380297|REF_RGD_ID:13702334
CHRNA3Pigcholinergic synapse is_active_inISORGD:7326149068941 PMID:12079404, PMID:16162937SynGOPMID:12079404|PMID:16162937
CHRNA3Pigcholinergic synapse is_active_inISORGD:7326149068941 PMID:16162937SynGOPMID:16162937
CHRNA3Pigciliary basal body located_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigcytosol located_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigdendrite  ISORGD:23459068941 RGDPMID:11297818|REF_RGD_ID:1643016
CHRNA3Pigdopaminergic synapse is_active_inISORGD:23459068941PMID:12065717SynGOPMID:12065717|REF_RGD_ID:13702272
CHRNA3Pigmembrane located_inIEAInterPro:IPR002394|InterPro:IPR006029|InterPro:IPR006201|InterPro:IPR006202|InterPro:IPR036719|InterPro:IPR036734150520179 InterProGO_REF:0000002
CHRNA3Pigmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
CHRNA3Pigneuron projection is_active_inIBAFB:FBgn0086778|MGI:99779|PANTHER:PTN000434994|RGD:2345|RGD:2346|RGD:2347|RGD:2348|RGD:61818|RGD:61820|RGD:620142|RGD:621533|UniProtKB:P09484|UniProtKB:P22770|UniProtKB:Q03481|WB:WBGene00000042|WB:WBGene00002974|WB:WBGene00006765|WB:WBGene00006774150520179 GO_CentralGO_REF:0000033
CHRNA3Pigneuronal cell body  ISORGD:23459068941 RGDPMID:11297818|REF_RGD_ID:1643016
CHRNA3Pigneurotransmitter receptor complex part_ofIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pignuclear speck located_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pignucleolus located_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigplasma membrane located_inIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigplasma membrane is_active_inIBAFB:FBgn0000036|FB:FBgn0000038|FB:FBgn0000039|FB:FBgn0015519|FB:FBgn0028875|FB:FBgn0032151|FB:FBgn0086778|FB:FBgn0266347|MGI:106213|MGI:1861899|MGI:87885|MGI:87888|MGI:87889|MGI:87890|MGI:87891|MGI:87892|MGI:87894|MGI:87895|MGI:96282|MGI:99779|PANTHER:PTN000434994|RGD:2346|RGD:2347|RGD:2349|RGD:2350|RGD:2351|RGD:2354|RGD:61818|RGD:620142|RGD:621534|RGD:621544|RGD:69281|UniProtKB:A5X5Y0|UniProtKB:O95264|UniProtKB:P02708|UniProtKB:P11230|UniProtKB:P17787|UniProtKB:P30926|UniProtKB:P32297|UniProtKB:P36544|UniProtKB:P43681|UniProtKB:P46098|UniProtKB:Q07001|UniProtKB:Q15822|UniProtKB:Q401N2|UniProtKB:Q70Z44|UniProtKB:Q866A2|UniProtKB:Q8WXA8|UniProtKB:Q9UGM1|WB:WBGene00000955|WB:WBGene00002974|WB:WBGene00006765|WB:WBGene00006774|WB:WBGene00006797|ZFIN:ZDB-GENE-030131-3805|ZFIN:ZDB-GENE-030131-6665|ZFIN:ZDB-GENE-040108-3|ZFIN:ZDB-GENE-040808-32|ZFIN:ZDB-GENE-060811-1|ZFIN:ZDB-GENE-070821-4|ZFIN:ZDB-GENE-090505-3|ZFIN:ZDB-GENE-120809-1|ZFIN:ZDB-GENE-980526-137150520179 GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
CHRNA3Pigacetylcholine binding  ISORGD:23459068941 RGDPMID:11297818|REF_RGD_ID:1643016
CHRNA3Pigacetylcholine receptor activity  ISORGD:23459068941 RGDPMID:2444984|REF_RGD_ID:69807
CHRNA3Pigacetylcholine receptor activity enablesIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigacetylcholine receptor activity contributes_toIBAMGI:87885|MGI:87888|PANTHER:PTN000436077|ZFIN:ZDB-GENE-040108-2|ZFIN:ZDB-GENE-090505-3|ZFIN:ZDB-GENE-980526-137150520179 GO_CentralGO_REF:0000033
CHRNA3Pigacetylcholine-gated monoatomic cation-selective channel activity enablesIBAMGI:106213|MGI:87887|MGI:87888|PANTHER:PTN000436077|RGD:2345|RGD:2346|RGD:2347|RGD:621533|RGD:69277|UniProtKB:P02708|UniProtKB:P32297|UniProtKB:P43681|UniProtKB:Q15822150520179 GO_CentralGO_REF:0000033
CHRNA3Pigacetylcholine-gated monoatomic cation-selective channel activity enablesIEAInterPro:IPR002394150520179 InterProGO_REF:0000002
CHRNA3Pigacetylcholine-gated monoatomic cation-selective channel activity enablesIEAUniProtKB:P32297|ensembl:ENSP00000315602150520179 EnsemblGO_REF:0000107
CHRNA3Pigacetylcholine-gated monoatomic cation-selective channel activity  ISORGD:23459068941 RGDPMID:11297818|REF_RGD_ID:1643016
CHRNA3Pigextracellular ligand-gated monoatomic ion channel activity enablesIEAInterPro:IPR006202|InterPro:IPR036734150520179 InterProGO_REF:0000002
CHRNA3Pigheterocyclic compound binding  ISOCHEBI:4803|CHEBI:4055|CHEBI:18723|CHEBI:34705|CHEBI:3385|CHEBI:6706|CHEBI:43931|CHEBI:15355|CHEBI:34705|CHEBI:42909068941 RGDPMID:15016836|REF_RGD_ID:2303194
CHRNA3Pigheterocyclic compound binding  ISORGD:23459068941A-85380, I-A-85380RGDPMID:15016836|REF_RGD_ID:2303194
CHRNA3Pigheterocyclic compound binding  ISOCHEBI:34705|CHEBI:4803|CHEBI:18723|CHEBI:40559068941 RGDPMID:16129735|REF_RGD_ID:2303195
CHRNA3Pigmonoatomic ion channel activity enablesIEAInterPro:IPR002394|InterPro:IPR006201150520179 InterProGO_REF:0000002
CHRNA3Pigprotein binding enablesISOUniProtKB:P55072,UniProtKB:P68543,UniProtKB:Q9UNE79068941 PMID:26265139UniProtPMID:26265139
CHRNA3Pigprotein binding enablesISOPR:Q99KJ09068941 PMID:19474315MGIPMID:19474315
CHRNA3Pigprotein binding enablesISOUniProtKB:Q86Y789068941 PMID:27344019UniProtPMID:27344019
CHRNA3Pigprotein-containing complex binding  ISORGD:23459068941heterodimerizationRGDPMID:20796176|REF_RGD_ID:8549534
CHRNA3Pigtransmembrane signaling receptor activity enablesIEAInterPro:IPR006201150520179 InterProGO_REF:0000002
CHRNA3Pigtransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential enablesISORGD:7326149068941 PMID:16162937SynGOPMID:16162937
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RGD Manual Annotations


  
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Original Reference(s)
CHRNA3Pigacetylcholine signaling pathway via nicotinic acetylcholine receptor   ISORGD:7326139068941 RGDPMID:19126755|REF_RGD_ID:8549510

Imported Annotations - SMPDB

Object Symbol
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Original Reference(s)
CHRNA3Pignicotine pharmacodynamics pathway  ISORGD:7326139068941 SMPDBSMP:00431
CHRNA3Pignicotine pharmacokinetics pathway  ISORGD:7326139068941 SMPDBSMP:00628
PMID:21536845   PMID:22301074   PMID:24825168   PMID:30032202  



CHRNA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,361,899 - 47,384,303 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1747,361,710 - 47,382,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2752,787,929 - 52,806,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHRNA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,593,052 - 78,620,996 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,593,052 - 78,621,295 (-)EnsemblGRCh38hg38GRCh38
GRCh371578,885,394 - 78,913,338 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,674,706 - 76,700,377 (-)NCBINCBI36Build 36hg18NCBI36
Build 341576,674,706 - 76,700,377NCBI
Celera1555,821,707 - 55,849,902 (-)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,642,483 - 55,671,504 (-)NCBIHuRef
CHM1_11579,003,962 - 79,032,196 (-)NCBICHM1_1
T2T-CHM13v2.01576,455,721 - 76,484,482 (-)NCBIT2T-CHM13v2.0
Chrna3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,917,401 - 54,933,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,917,395 - 54,933,846 (-)EnsemblGRCm39 Ensembl
GRCm38955,010,117 - 55,026,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,010,111 - 55,026,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv37954,859,150 - 54,874,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36954,809,480 - 54,824,696 (-)NCBIMGSCv36mm8
Celera952,254,751 - 52,269,961 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map929.84NCBI
Chrna3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,297,755 - 64,311,251 (-)NCBIGRCr8
mRatBN7.2855,401,668 - 55,415,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,401,702 - 55,415,165 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx860,943,296 - 60,956,354 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0859,222,294 - 59,235,355 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0857,086,538 - 57,099,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0859,594,007 - 59,607,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,592,403 - 59,607,275 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0858,176,165 - 58,189,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4858,570,223 - 58,583,594 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1858,588,997 - 58,602,801 (-)NCBI
Celera854,888,972 - 54,929,562 (-)NCBICelera
Cytogenetic Map8q24NCBI
Chrna3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450977,075 - 1,011,372 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955450979,630 - 1,011,316 (-)NCBIChiLan1.0ChiLan1.0
CHRNA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,807,750 - 67,835,101 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,973,644 - 72,000,975 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,523,553 - 57,550,228 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11576,486,416 - 76,513,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,487,710 - 76,512,044 (-)Ensemblpanpan1.1panPan2
CHRNA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11338,330,287 - 38,343,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1338,328,814 - 38,346,246 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,289,178 - 38,306,359 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,802,608 - 38,819,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,802,250 - 38,833,013 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,493,778 - 38,510,924 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,603,187 - 38,616,744 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01339,078,181 - 39,095,376 (+)NCBIUU_Cfam_GSD_1.0
Chrna3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,579,566 - 118,599,906 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,427,495 - 36,457,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,427,598 - 36,447,903 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRNA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1264,721,145 - 4,747,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl264,722,489 - 4,737,164 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048137,048,285 - 137,075,017 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrna3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,324,501 - 2,357,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,324,480 - 2,357,389 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CHRNA3
638 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 1 18 3 2 4 9 6 18 2 4 3



Ensembl Acc Id: ENSSSCT00000001958   ⟹   ENSSSCP00000001909
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl747,361,778 - 47,382,736 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000053544   ⟹   ENSSSCP00000040005
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl747,361,899 - 47,382,736 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000062231   ⟹   ENSSSCP00000034689
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl747,361,899 - 47,384,303 (+)Ensembl
RefSeq Acc Id: XM_001925760   ⟹   XP_001925795
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1747,361,710 - 47,382,743 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001925795   ⟸   XM_001925760
- UniProtKB: F1RKU8 (UniProtKB/TrEMBL),   A0A4X1UVC3 (UniProtKB/TrEMBL),   A0A8D1CK85 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000001909   ⟸   ENSSSCT00000001958
Ensembl Acc Id: ENSSSCP00000034689   ⟸   ENSSSCT00000062231
Ensembl Acc Id: ENSSSCP00000040005   ⟸   ENSSSCT00000053544


1 to 40 of 57 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000001752 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015064786 UniProtKB/TrEMBL
  ENSSSCG00025062969 UniProtKB/TrEMBL
  ENSSSCG00030062119 UniProtKB/TrEMBL
  ENSSSCG00035004577 UniProtKB/TrEMBL
  ENSSSCG00040048147 UniProtKB/TrEMBL
  ENSSSCG00050026519 UniProtKB/TrEMBL
  ENSSSCG00060035223 UniProtKB/TrEMBL
  ENSSSCG00065024707 UniProtKB/TrEMBL
  ENSSSCG00070020096 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053544 ENTREZGENE
  ENSSSCT00000053544.2 UniProtKB/TrEMBL
  ENSSSCT00000062231.2 UniProtKB/TrEMBL
  ENSSSCT00015087078.1 UniProtKB/TrEMBL
  ENSSSCT00025086353.1 UniProtKB/TrEMBL
  ENSSSCT00025086529.1 UniProtKB/TrEMBL
  ENSSSCT00025086850.1 UniProtKB/TrEMBL
  ENSSSCT00030086897.1 UniProtKB/TrEMBL
  ENSSSCT00030086907.1 UniProtKB/TrEMBL
  ENSSSCT00035005759.1 UniProtKB/TrEMBL
  ENSSSCT00040064976.1 UniProtKB/TrEMBL
  ENSSSCT00050035715.1 UniProtKB/TrEMBL
  ENSSSCT00060047777.1 UniProtKB/TrEMBL
  ENSSSCT00065033034.1 UniProtKB/TrEMBL
  ENSSSCT00065033039.1 UniProtKB/TrEMBL
  ENSSSCT00070039853.1 UniProtKB/TrEMBL
  ENSSSCT00070039858.1 UniProtKB/TrEMBL
  ENSSSCT00070039863.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
  Nicotinic_acetylcholine_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100151989 UniProtKB/TrEMBL
NCBI Gene CHRNA3 ENTREZGENE
1 to 40 of 57 rows