ADAR (adenosine deaminase RNA specific) - Rat Genome Database

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Gene: ADAR (adenosine deaminase RNA specific) Sus scrofa
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Symbol: ADAR
Name: adenosine deaminase RNA specific
RGD ID: 13842993
Description: ENCODES a protein that exhibits adenosine deaminase activity (inferred); double-stranded RNA adenosine deaminase activity (inferred); RNA binding (inferred); INVOLVED IN adenosine to inosine editing (ortholog); apoptotic process (ortholog); base conversion or substitution editing (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 6 (ortholog); FOUND IN mitochondrion (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: double-stranded RNA-specific adenosine deaminase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,154,358 - 95,197,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,154,230 - 95,197,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,980,303 - 104,023,300 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,154,358 - 95,197,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,154,230 - 95,197,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,980,303 - 104,023,300 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,582,057 - 154,627,997 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,581,695 - 154,628,013 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,554,533 - 154,600,473 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,821,157 - 152,867,061 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,367,612 - 151,393,742NCBI
Celera1127,626,167 - 127,672,093 (-)NCBICelera
Cytogenetic Map1q21.3ENTREZGENE
HuRef1125,917,984 - 125,963,676 (-)NCBIHuRef
CHM1_11155,950,933 - 155,996,946 (-)NCBICHM1_1
T2T-CHM13v2.01153,719,177 - 153,765,142 (-)NCBIT2T-CHM13v2.0
Adar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,622,321 - 89,660,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,622,329 - 89,660,753 (+)EnsemblGRCm39 Ensembl
GRCm38389,714,469 - 89,753,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,715,022 - 89,753,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,518,944 - 89,557,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,800,987 - 89,839,372 (+)NCBIMGSCv36mm8
Celera389,752,022 - 89,790,497 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
Adar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,436,076 - 177,475,969 (+)NCBIGRCr8
mRatBN7.22175,138,391 - 175,178,280 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,138,403 - 175,178,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,303,808 - 182,324,734 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,326,190 - 180,347,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,927,089 - 174,948,007 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,045,551 - 189,085,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,062,443 - 189,083,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,468,426 - 208,506,275 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,935,246 - 181,956,039 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,885,351 - 181,906,145 (+)NCBI
Celera2169,097,840 - 169,118,615 (+)NCBICelera
Cytogenetic Map2q34NCBI
Adar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,078,319 - 1,106,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,078,319 - 1,106,938 (-)NCBIChiLan1.0ChiLan1.0
ADAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,202,292 - 95,251,931 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,937,379 - 94,984,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,937,993 - 129,983,747 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,549,380 - 133,595,115 (-)NCBIpanpan1.1PanPan1.1panPan2
ADAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,762,021 - 42,785,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,748,136 - 42,782,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,237,226 - 42,275,953 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,632,040 - 42,655,201 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,616,310 - 42,655,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,411,330 - 42,434,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,449,549 - 42,488,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,733,156 - 42,771,908 (+)NCBIUU_Cfam_GSD_1.0
Adar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,150,541 - 25,177,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,183,079 - 4,203,435 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,183,016 - 4,208,341 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,194,611 - 9,241,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,219,937 - 9,241,329 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,533,486 - 8,579,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,812,448 - 2,839,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,783,058 - 2,839,688 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ADAR
982 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007168   ⟹   ENSSSCP00000006975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,154,358 - 95,197,274 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066989   ⟹   ENSSSCP00000070339
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,178,756 - 95,197,298 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000087317   ⟹   ENSSSCP00000062912
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,172,824 - 95,197,304 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000097834   ⟹   ENSSSCP00000079978
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,172,824 - 95,197,304 (+)Ensembl
RefSeq Acc Id: XM_021089756   ⟹   XP_020945415
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1495,154,230 - 95,197,308 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020945415 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000006975
  ENSSSCP00000006975.5
  ENSSSCP00000062912.1
  ENSSSCP00000070339.2
  ENSSSCP00000079978.1
  ENSSSCP00070047615.1
GenBank Protein JAA53561 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020945415   ⟸   XM_021089756
- UniProtKB: A0A4X1W0D7 (UniProtKB/TrEMBL),   A0A5G2RGJ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000070339   ⟸   ENSSSCT00000066989
Ensembl Acc Id: ENSSSCP00000006975   ⟸   ENSSSCT00000007168
Ensembl Acc Id: ENSSSCP00000062912   ⟸   ENSSSCT00000087317
Ensembl Acc Id: ENSSSCP00000079978   ⟸   ENSSSCT00000097834
Protein Domains
A to I editase   DRBM   Z-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006543 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070027922 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007168 ENTREZGENE
  ENSSSCT00000007168.5 UniProtKB/TrEMBL
  ENSSSCT00000066989.2 UniProtKB/TrEMBL
  ENSSSCT00000087317.2 UniProtKB/TrEMBL
  ENSSSCT00000097834.1 UniProtKB/TrEMBL
  ENSSSCT00070056037.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/TrEMBL
InterPro A_deamin UniProtKB/TrEMBL
  ADAR1_DSRM_1 UniProtKB/TrEMBL
  ADAR1_DSRM_3 UniProtKB/TrEMBL
  dsRBD_dom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
  Zalpha_dom UniProtKB/TrEMBL
NCBI Gene ADAR ENTREZGENE
PANTHER DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE UniProtKB/TrEMBL
  EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam A_deamin UniProtKB/TrEMBL
  dsrm UniProtKB/TrEMBL
  z-alpha UniProtKB/TrEMBL
PROSITE A_DEAMIN_EDITASE UniProtKB/TrEMBL
  DRADA_REPEAT UniProtKB/TrEMBL
  DS_RBD UniProtKB/TrEMBL
SMART ADEAMc UniProtKB/TrEMBL
  DSRM UniProtKB/TrEMBL
  Zalpha UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A4X1W0D7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QXI1_PIG UniProtKB/TrEMBL
  A0A5G2RGJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FM51_PIG UniProtKB/TrEMBL
  F1RGM8_PIG UniProtKB/TrEMBL
  K9J4M6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85097 ENTREZGENE