ADAR (adenosine deaminase RNA specific) - Rat Genome Database

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Gene: ADAR (adenosine deaminase RNA specific) Canis lupus familiaris
Analyze
Symbol: ADAR
Name: adenosine deaminase RNA specific
RGD ID: 12128828
Description: ENCODES a protein that exhibits double-stranded RNA adenosine deaminase activity (inferred); double-stranded RNA binding (inferred); RNA binding (inferred); INVOLVED IN adenosine to inosine editing (ortholog); apoptotic process (ortholog); base conversion or substitution editing (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 6 (ortholog); FOUND IN nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adenosine deaminase, RNA specific; double-stranded RNA-specific adenosine deaminase; LOC106559051; uncharacterized LOC106559051
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,762,021 - 42,785,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,748,136 - 42,782,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,237,226 - 42,275,953 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,632,040 - 42,655,201 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,616,310 - 42,655,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,411,330 - 42,434,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,449,549 - 42,488,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,733,156 - 42,771,908 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,762,021 - 42,785,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,748,136 - 42,782,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,237,226 - 42,275,953 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,632,040 - 42,655,201 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,616,310 - 42,655,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,411,330 - 42,434,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,449,549 - 42,488,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,733,156 - 42,771,908 (+)NCBIUU_Cfam_GSD_1.0
ADAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,582,057 - 154,627,997 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,581,695 - 154,628,013 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,554,533 - 154,600,473 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,821,157 - 152,867,061 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,367,612 - 151,393,742NCBI
Celera1127,626,167 - 127,672,093 (-)NCBICelera
Cytogenetic Map1q21.3ENTREZGENE
HuRef1125,917,984 - 125,963,676 (-)NCBIHuRef
CHM1_11155,950,933 - 155,996,946 (-)NCBICHM1_1
T2T-CHM13v2.01153,719,177 - 153,765,142 (-)NCBIT2T-CHM13v2.0
Adar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,622,321 - 89,660,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,622,329 - 89,660,753 (+)EnsemblGRCm39 Ensembl
GRCm38389,714,469 - 89,753,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,715,022 - 89,753,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,518,944 - 89,557,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,800,987 - 89,839,372 (+)NCBIMGSCv36mm8
Celera389,752,022 - 89,790,497 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
Adar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,436,076 - 177,475,969 (+)NCBIGRCr8
mRatBN7.22175,138,391 - 175,178,280 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,138,403 - 175,178,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,303,808 - 182,324,734 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,326,190 - 180,347,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,927,089 - 174,948,007 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,045,551 - 189,085,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,062,443 - 189,083,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,468,426 - 208,506,275 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,935,246 - 181,956,039 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,885,351 - 181,906,145 (+)NCBI
Celera2169,097,840 - 169,118,615 (+)NCBICelera
Cytogenetic Map2q34NCBI
Adar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,078,319 - 1,106,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,078,319 - 1,106,938 (-)NCBIChiLan1.0ChiLan1.0
ADAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,202,292 - 95,251,931 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,937,379 - 94,984,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,937,993 - 129,983,747 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,549,380 - 133,595,115 (-)NCBIpanpan1.1PanPan1.1panPan2
Adar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,150,541 - 25,177,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,183,079 - 4,203,435 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,183,016 - 4,208,341 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,154,358 - 95,197,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,154,230 - 95,197,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,980,303 - 104,023,300 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,194,611 - 9,241,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,219,937 - 9,241,329 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,533,486 - 8,579,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,812,448 - 2,839,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,783,058 - 2,839,688 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ADAR
223 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 12 10 6
Low 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005622785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000027191   ⟹   ENSCAFP00000025289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl742,748,136 - 42,782,999 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845025529   ⟹   ENSCAFP00845020098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl742,616,310 - 42,655,189 (+)Ensembl
RefSeq Acc Id: XM_005622785   ⟹   XP_005622842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1742,762,021 - 42,785,192 (+)NCBI
Dog10K_Boxer_Tasha742,252,797 - 42,275,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038481836   ⟹   XP_038337764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1742,411,330 - 42,434,458 (+)NCBI
RefSeq Acc Id: XM_038543218   ⟹   XP_038399146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0742,748,738 - 42,771,908 (+)NCBI
RefSeq Acc Id: XM_038543219   ⟹   XP_038399147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0742,748,738 - 42,771,908 (+)NCBI
RefSeq Acc Id: XM_038543220   ⟹   XP_038399148
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0742,733,156 - 42,771,908 (+)NCBI
RefSeq Acc Id: XM_038571954   ⟹   XP_038427882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha742,252,797 - 42,275,953 (+)NCBI
RefSeq Acc Id: XM_038571968   ⟹   XP_038427896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha742,237,226 - 42,275,953 (+)NCBI
RefSeq Acc Id: XM_038607327   ⟹   XP_038463255
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0742,465,169 - 42,488,308 (+)NCBI
RefSeq Acc Id: XM_038607328   ⟹   XP_038463256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0742,465,169 - 42,488,308 (+)NCBI
RefSeq Acc Id: XM_038607329   ⟹   XP_038463257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0742,449,549 - 42,488,308 (+)NCBI
RefSeq Acc Id: XM_038672046   ⟹   XP_038527974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0742,632,040 - 42,655,201 (+)NCBI
RefSeq Acc Id: XP_005622842   ⟸   XM_005622785
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NIR6 (UniProtKB/TrEMBL),   A0A8C0RSI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000025289   ⟸   ENSCAFT00000027191
RefSeq Acc Id: XP_038337764   ⟸   XM_038481836
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038463257   ⟸   XM_038607329
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038463255   ⟸   XM_038607327
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038463256   ⟸   XM_038607328
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038527974   ⟸   XM_038672046
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RSI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427896   ⟸   XM_038571968
- Peptide Label: isoform X7
- UniProtKB: A0A8P0PG92 (UniProtKB/TrEMBL),   A0A8I3NVI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427882   ⟸   XM_038571954
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K2T7 (UniProtKB/TrEMBL),   A0A8C0RSI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399148   ⟸   XM_038543220
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NVI3 (UniProtKB/TrEMBL),   A0A8P0PG92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399146   ⟸   XM_038543218
- Peptide Label: isoform X4
- UniProtKB: A0A8C0K2T7 (UniProtKB/TrEMBL),   A0A8C0RSI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399147   ⟸   XM_038543219
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RSI7 (UniProtKB/TrEMBL),   A0A8P0NIR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845020098   ⟸   ENSCAFT00845025529
Protein Domains
A to I editase   DRBM   Z-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017169 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030023975 UniProtKB/TrEMBL
  ENSCAFG00845014266 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027191.5 UniProtKB/TrEMBL
  ENSCAFT00000102447.1 UniProtKB/TrEMBL
  ENSCAFT00030044331.1 UniProtKB/TrEMBL
  ENSCAFT00845025529.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/TrEMBL
InterPro A_deamin UniProtKB/TrEMBL
  ADAR1_DSRM_1 UniProtKB/TrEMBL
  ADAR1_DSRM_3 UniProtKB/TrEMBL
  dsRBD_dom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
  Z_dom UniProtKB/TrEMBL
NCBI Gene ADAR ENTREZGENE
PANTHER DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE UniProtKB/TrEMBL
  EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam A_deamin UniProtKB/TrEMBL
  dsrm UniProtKB/TrEMBL
  z-alpha UniProtKB/TrEMBL
PROSITE A_DEAMIN_EDITASE UniProtKB/TrEMBL
  DS_RBD UniProtKB/TrEMBL
  Z_BINDING UniProtKB/TrEMBL
SMART ADEAMc UniProtKB/TrEMBL
  DSRM UniProtKB/TrEMBL
  Zalpha UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A8C0K2T7 ENTREZGENE
  A0A8C0RSI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NVI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NIR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PG92 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37612 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 ADAR  adenosine deaminase RNA specific  LOC106559051  uncharacterized LOC106559051  Data merged from RGD:12325817 737654 PROVISIONAL
2019-01-29 ADAR  adenosine deaminase RNA specific    adenosine deaminase, RNA specific  Symbol and/or name change 5135510 APPROVED