RCOR3 (REST corepressor 3) - Rat Genome Database

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Gene: RCOR3 (REST corepressor 3) Homo sapiens
Analyze
Symbol: RCOR3
Name: REST corepressor 3
RGD ID: 1350848
HGNC Page HGNC:25594
Description: Predicted to enable enzyme binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ10876; FLJ16298; RP11-318L16.1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,259,366 - 211,316,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,258,377 - 211,316,385 (+)EnsemblGRCh38hg38GRCh38
GRCh371211,432,708 - 211,489,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361209,499,949 - 209,556,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 341207,821,720 - 207,877,972NCBI
Celera1184,656,707 - 184,716,396 (+)NCBICelera
Cytogenetic Map1q32.2-q32.3NCBI
HuRef1182,109,654 - 182,166,679 (+)NCBIHuRef
CHM1_11212,705,251 - 212,762,151 (+)NCBICHM1_1
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:10718198   PMID:10737800   PMID:14702039   PMID:15342556   PMID:15489334   PMID:16189514   PMID:16344560   PMID:16710414   PMID:17081983   PMID:18029348   PMID:19060904  
PMID:19274049   PMID:19322201   PMID:19394292   PMID:19773279   PMID:20360068   PMID:21150319   PMID:21258344   PMID:21516116   PMID:21765449   PMID:21832049   PMID:21873635   PMID:21988832  
PMID:23414517   PMID:23455924   PMID:23752268   PMID:24981860   PMID:25416956   PMID:25798074   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26593974   PMID:26638075   PMID:26871637  
PMID:27107014   PMID:27634302   PMID:27684187   PMID:27705803   PMID:27926873   PMID:28242625   PMID:28514442   PMID:28611215   PMID:28883622   PMID:29395067   PMID:29778605   PMID:29892012  
PMID:30804502   PMID:30886144   PMID:30894540   PMID:31182584   PMID:31586073   PMID:31753913   PMID:32296183   PMID:32814053   PMID:32891193   PMID:33640491   PMID:33961781   PMID:34079125  
PMID:34383978   PMID:34709266   PMID:35140242   PMID:35271311   PMID:35831314   PMID:36129980   PMID:36543142   PMID:37314216   PMID:37536630  


Genomics

Comparative Map Data
RCOR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,259,366 - 211,316,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,258,377 - 211,316,385 (+)EnsemblGRCh38hg38GRCh38
GRCh371211,432,708 - 211,489,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361209,499,949 - 209,556,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 341207,821,720 - 207,877,972NCBI
Celera1184,656,707 - 184,716,396 (+)NCBICelera
Cytogenetic Map1q32.2-q32.3NCBI
HuRef1182,109,654 - 182,166,679 (+)NCBIHuRef
CHM1_11212,705,251 - 212,762,151 (+)NCBICHM1_1
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBIT2T-CHM13v2.0
Rcor3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,782,842 - 191,822,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,782,846 - 191,822,359 (-)EnsemblGRCm39 Ensembl
GRCm381192,098,546 - 192,138,074 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1192,098,546 - 192,138,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv371193,924,340 - 193,961,669 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,800,994 - 193,838,511 (-)NCBIMGSCv36mm8
Celera1198,993,375 - 199,030,668 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.23NCBI
Rcor3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813106,156,166 - 106,196,542 (-)NCBIGRCr8
mRatBN7.213103,624,966 - 103,665,565 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13103,624,971 - 103,665,565 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13106,147,164 - 106,185,492 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013107,530,997 - 107,569,325 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,745,999 - 104,784,327 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,822,149 - 110,864,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,822,150 - 110,864,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013115,381,178 - 115,422,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13103,066,186 - 103,096,345 (-)NCBICelera
Cytogenetic Map13q27NCBI
Rcor3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554891,018,529 - 1,066,807 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554891,016,124 - 1,059,795 (-)NCBIChiLan1.0ChiLan1.0
RCOR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2138,091,704 - 38,148,935 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1138,056,730 - 38,114,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01186,822,259 - 186,879,534 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11191,686,975 - 191,743,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1191,686,125 - 191,743,487 (+)Ensemblpanpan1.1panPan2
RCOR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.179,720,401 - 9,773,223 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl79,719,411 - 9,789,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha79,295,402 - 9,348,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.079,422,869 - 9,476,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl79,422,814 - 9,475,915 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.179,346,213 - 9,399,331 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.079,447,751 - 9,501,005 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.079,572,124 - 9,625,603 (+)NCBIUU_Cfam_GSD_1.0
Rcor3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934464,746,303 - 64,790,969 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365571,986,630 - 2,031,078 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365571,986,587 - 2,031,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCOR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,833,399 - 131,890,799 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,833,395 - 131,890,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,906,668 - 144,924,011 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RCOR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12518,184,375 - 18,247,432 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2518,184,011 - 18,247,398 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605518,716,347 - 18,774,169 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcor3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807945,783 - 983,581 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807943,599 - 990,205 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RCOR3
23 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209646207-248931113)x3 copy number gain See cases [RCV000051861] Chr1:209646207..248931113 [GRCh38]
Chr1:209819552..249225312 [GRCh37]
Chr1:207886175..247191935 [NCBI36]
Chr1:1q32.2-44
pathogenic
NM_001136223.1(RCOR3):c.940-467T>C single nucleotide variant Lung cancer [RCV000090419] Chr1:211295209 [GRCh38]
Chr1:211468551 [GRCh37]
Chr1:1q32.2
uncertain significance
GRCh38/hg38 1q32.2-44(chr1:209963625-248918469)x3 copy number gain See cases [RCV000134979] Chr1:209963625..248918469 [GRCh38]
Chr1:210136970..249212668 [GRCh37]
Chr1:208203593..247179291 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q32.2-32.3(chr1:208063461-211907812)x1 copy number loss See cases [RCV000138122] Chr1:208063461..211907812 [GRCh38]
Chr1:208236806..212081154 [GRCh37]
Chr1:206303429..210147777 [NCBI36]
Chr1:1q32.2-32.3
likely benign
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12
pathogenic
GRCh38/hg38 1q32.2-44(chr1:207346642-248930485)x3 copy number gain See cases [RCV000143727] Chr1:207346642..248930485 [GRCh38]
Chr1:207519987..249224684 [GRCh37]
Chr1:205586610..247191307 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_001136223.3(RCOR3):c.125A>T (p.Tyr42Phe) single nucleotide variant not specified [RCV004333856] Chr1:211259685 [GRCh38]
Chr1:211433027 [GRCh37]
Chr1:1q32.2
uncertain significance
GRCh37/hg19 1q32.1-32.3(chr1:204682513-212815646) copy number loss Global developmental delay [RCV000626524] Chr1:204682513..212815646 [GRCh37]
Chr1:1q32.1-32.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41
pathogenic
GRCh37/hg19 1q32.1-32.3(chr1:206329070-213263817)x3 copy number gain not provided [RCV000848713] Chr1:206329070..213263817 [GRCh37]
Chr1:1q32.1-32.3
uncertain significance
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44
pathogenic
GRCh37/hg19 1q32.2-44(chr1:210152794-249218992)x3 copy number gain See cases [RCV001194578] Chr1:210152794..249218992 [GRCh37]
Chr1:1q32.2-44
pathogenic
GRCh37/hg19 1q32.1-44(chr1:204045948-249218992)x3 copy number gain See cases [RCV001007407] Chr1:204045948..249218992 [GRCh37]
Chr1:1q32.1-44
pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance
GRCh37/hg19 1q31.3-44(chr1:197867914-249224684)x3 copy number gain See cases [RCV002287837] Chr1:197867914..249224684 [GRCh37]
Chr1:1q31.3-44
pathogenic
NM_001136223.3(RCOR3):c.1535C>T (p.Pro512Leu) single nucleotide variant not specified [RCV004103660] Chr1:211313641 [GRCh38]
Chr1:211486983 [GRCh37]
Chr1:1q32.3
uncertain significance
GRCh37/hg19 1q25.3-32.3(chr1:181453460-213107248)x3 copy number gain not provided [RCV002475637] Chr1:181453460..213107248 [GRCh37]
Chr1:1q25.3-32.3
pathogenic
GRCh38/hg38 1q32.2-42.13(chr1:228006998-228061271)x2 copy number loss Orofacial cleft 2 [RCV002481175] Chr1:228006998..228061271 [GRCh38]
Chr1:1q32.2-42.13
association
NM_001136223.3(RCOR3):c.1471C>T (p.Pro491Ser) single nucleotide variant not specified [RCV004139441] Chr1:211313577 [GRCh38]
Chr1:211486919 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_001136223.3(RCOR3):c.1236T>G (p.Asn412Lys) single nucleotide variant not specified [RCV004172076] Chr1:211312880 [GRCh38]
Chr1:211486222 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_001136223.3(RCOR3):c.224G>A (p.Gly75Asp) single nucleotide variant not specified [RCV004173753] Chr1:211271232 [GRCh38]
Chr1:211444574 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.74C>T (p.Pro25Leu) single nucleotide variant not specified [RCV004096303] Chr1:211259634 [GRCh38]
Chr1:211432976 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.935G>A (p.Arg312His) single nucleotide variant not specified [RCV004270865] Chr1:211289392 [GRCh38]
Chr1:211462734 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.525T>A (p.Asp175Glu) single nucleotide variant not specified [RCV004276464] Chr1:211278125 [GRCh38]
Chr1:211451467 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.755T>C (p.Ile252Thr) single nucleotide variant not specified [RCV004355411] Chr1:211289212 [GRCh38]
Chr1:211462554 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.700A>C (p.Lys234Gln) single nucleotide variant not specified [RCV004353346] Chr1:211279296 [GRCh38]
Chr1:211452638 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.64G>A (p.Ala22Thr) single nucleotide variant not specified [RCV004358686] Chr1:211259624 [GRCh38]
Chr1:211432966 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.1339C>T (p.Arg447Trp) single nucleotide variant not specified [RCV004443668] Chr1:211313445 [GRCh38]
Chr1:211486787 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_001136223.3(RCOR3):c.1463G>A (p.Arg488Gln) single nucleotide variant not specified [RCV004443670] Chr1:211313569 [GRCh38]
Chr1:211486911 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_001136223.3(RCOR3):c.1595C>T (p.Thr532Met) single nucleotide variant not specified [RCV004443671] Chr1:211313701 [GRCh38]
Chr1:211487043 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_001136223.3(RCOR3):c.248A>C (p.Asp83Ala) single nucleotide variant not specified [RCV004443672] Chr1:211271256 [GRCh38]
Chr1:211444598 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.890A>T (p.Asn297Ile) single nucleotide variant not specified [RCV004443673] Chr1:211289347 [GRCh38]
Chr1:211462689 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.1363G>T (p.Ala455Ser) single nucleotide variant not specified [RCV004443669] Chr1:211313469 [GRCh38]
Chr1:211486811 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_001136223.3(RCOR3):c.895A>G (p.Ile299Val) single nucleotide variant not specified [RCV004443674] Chr1:211289352 [GRCh38]
Chr1:211462694 [GRCh37]
Chr1:1q32.2
uncertain significance
NC_000001.10:g.(?_190829412)_(216061974_?)del deletion not provided [RCV004579260] Chr1:190829412..216061974 [GRCh37]
Chr1:1q31.2-41
pathogenic
NM_001136223.3(RCOR3):c.473C>G (p.Ala158Gly) single nucleotide variant not specified [RCV004671757] Chr1:211276375 [GRCh38]
Chr1:211449717 [GRCh37]
Chr1:1q32.2
uncertain significance
NM_001136223.3(RCOR3):c.728C>A (p.Thr243Asn) single nucleotide variant not specified [RCV004657992] Chr1:211289185 [GRCh38]
Chr1:211462527 [GRCh37]
Chr1:1q32.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2757
Count of miRNA genes:1093
Interacting mature miRNAs:1338
Transcripts:ENST00000367005, ENST00000367006, ENST00000419091, ENST00000452621, ENST00000472734, ENST00000485186, ENST00000486666, ENST00000526255, ENST00000528066, ENST00000528408, ENST00000528926, ENST00000529572, ENST00000529763, ENST00000533469, ENST00000534460, ENST00000534478
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597351777GWAS1447851_Hbody height QTL GWAS1447851 (human)3e-35body height (VT:0001253)body height (CMO:0000106)1211260330211260331Human
597103052GWAS1199126_Hplatelet crit QTL GWAS1199126 (human)1e-09platelet critplateletcrit (CMO:0001349)1211268844211268845Human

Markers in Region
SHGC-76308  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,489,304 - 211,489,510UniSTSGRCh37
Build 361209,555,927 - 209,556,133RGDNCBI36
Celera1184,715,973 - 184,716,179RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,166,256 - 182,166,462UniSTS
TNG Radiation Hybrid Map1103900.0UniSTS
GeneMap99-GB4 RH Map1694.61UniSTS
Whitehead-RH Map1845.3UniSTS
RH103497  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,434,283 - 211,434,404UniSTSGRCh37
Build 361209,500,906 - 209,501,027RGDNCBI36
Celera1184,660,967 - 184,661,088RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,111,275 - 182,111,396UniSTS
GeneMap99-GB4 RH Map1694.61UniSTS
SHGC-76311  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,488,735 - 211,488,823UniSTSGRCh37
Build 361209,555,358 - 209,555,446RGDNCBI36
Celera1184,715,404 - 184,715,492RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,165,687 - 182,165,775UniSTS
TNG Radiation Hybrid Map1103900.0UniSTS
GeneMap99-GB4 RH Map1694.71UniSTS
D1S527E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,488,817 - 211,488,896UniSTSGRCh37
Build 361209,555,440 - 209,555,519RGDNCBI36
Celera1184,715,486 - 184,715,565RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,165,769 - 182,165,848UniSTS
AL009661  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,474,993 - 211,475,073UniSTSGRCh37
Build 361209,541,616 - 209,541,696RGDNCBI36
Celera1184,701,674 - 184,701,754RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,151,946 - 182,152,026UniSTS
SHGC-53772  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,487,840 - 211,488,076UniSTSGRCh37
Build 361209,554,463 - 209,554,699RGDNCBI36
Celera1184,714,509 - 184,714,745RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,164,792 - 182,165,028UniSTS
AL009693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,443,902 - 211,444,078UniSTSGRCh37
Build 361209,510,525 - 209,510,701RGDNCBI36
Celera1184,670,584 - 184,670,760RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,120,844 - 182,121,020UniSTS
D1S3586  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,489,169 - 211,489,314UniSTSGRCh37
Build 361209,555,792 - 209,555,937RGDNCBI36
Celera1184,715,838 - 184,715,983RGD
Cytogenetic Map1q32.2UniSTS
HuRef1182,166,121 - 182,166,266UniSTS
TNG Radiation Hybrid Map1103900.0UniSTS
GeneMap99-GB4 RH Map1694.71UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2251 4972 1726 2351 5 623 1951 465 2269 7303 6469 53 3734 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001136224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001136225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001350069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001350070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005273191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006711442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007061955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007061956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007061957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007061958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA831517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB037764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI380424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI051857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP221223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ218032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU689437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA224160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA334880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA478986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA925839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB164963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC387352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY024910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000367005   ⟹   ENSP00000355972
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,975 - 211,316,385 (+)Ensembl
Ensembl Acc Id: ENST00000367006   ⟹   ENSP00000355973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,279 - 211,314,591 (+)Ensembl
Ensembl Acc Id: ENST00000419091   ⟹   ENSP00000413929
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,366 - 211,316,385 (+)Ensembl
Ensembl Acc Id: ENST00000452621   ⟹   ENSP00000398558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,388 - 211,313,298 (+)Ensembl
Ensembl Acc Id: ENST00000472734
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,606 - 211,261,202 (+)Ensembl
Ensembl Acc Id: ENST00000485186   ⟹   ENSP00000434181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,289,332 - 211,312,819 (+)Ensembl
Ensembl Acc Id: ENST00000486666
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,301,461 - 211,314,587 (+)Ensembl
Ensembl Acc Id: ENST00000526255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,312,237 - 211,313,839 (+)Ensembl
Ensembl Acc Id: ENST00000528066
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,304,011 - 211,313,025 (+)Ensembl
Ensembl Acc Id: ENST00000528408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,553 - 211,271,570 (+)Ensembl
Ensembl Acc Id: ENST00000528926   ⟹   ENSP00000432779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,396 - 211,312,804 (+)Ensembl
Ensembl Acc Id: ENST00000529572   ⟹   ENSP00000434605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,259,947 - 211,279,276 (+)Ensembl
Ensembl Acc Id: ENST00000529763   ⟹   ENSP00000437048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,289,178 - 211,313,672 (+)Ensembl
Ensembl Acc Id: ENST00000533469   ⟹   ENSP00000436838
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,258,408 - 211,278,223 (+)Ensembl
Ensembl Acc Id: ENST00000534460   ⟹   ENSP00000433441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,279,238 - 211,313,474 (+)Ensembl
Ensembl Acc Id: ENST00000534478   ⟹   ENSP00000436057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,258,377 - 211,276,335 (+)Ensembl
RefSeq Acc Id: NM_001136223   ⟹   NP_001129695
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
GRCh371211,432,708 - 211,489,727 (+)RGD
Celera1184,656,707 - 184,716,396 (+)RGD
HuRef1182,109,654 - 182,166,679 (+)ENTREZGENE
CHM1_11212,705,251 - 212,762,151 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001136224   ⟹   NP_001129696
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
GRCh371211,432,708 - 211,489,727 (+)RGD
Celera1184,656,707 - 184,716,396 (+)RGD
HuRef1182,109,654 - 182,166,679 (+)ENTREZGENE
CHM1_11212,705,251 - 212,762,151 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001136225   ⟹   NP_001129697
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,313,298 (+)NCBI
GRCh371211,432,708 - 211,489,727 (+)RGD
Celera1184,656,707 - 184,716,396 (+)RGD
HuRef1182,109,654 - 182,166,679 (+)ENTREZGENE
CHM1_11212,705,251 - 212,759,079 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,558,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001350069   ⟹   NP_001336998
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001350070   ⟹   NP_001336999
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018254   ⟹   NP_060724
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,947 - 211,316,385 (+)NCBI
GRCh371211,432,708 - 211,489,727 (+)RGD
Build 361209,499,949 - 209,556,200 (+)NCBI Archive
Celera1184,656,707 - 184,716,396 (+)RGD
HuRef1182,109,654 - 182,166,679 (+)ENTREZGENE
CHM1_11212,705,760 - 212,762,151 (+)NCBI
T2T-CHM13v2.01210,505,512 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146432
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146433
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146434
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,313,298 (+)NCBI
T2T-CHM13v2.01210,504,931 - 210,558,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005273191   ⟹   XP_005273248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
GRCh371211,432,708 - 211,489,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006711442   ⟹   XP_006711505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011509748   ⟹   XP_011508050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017001761   ⟹   XP_016857250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047425011   ⟹   XP_047280967
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,271,228 - 211,316,385 (+)NCBI
RefSeq Acc Id: XM_047425021   ⟹   XP_047280977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
RefSeq Acc Id: XM_047425032   ⟹   XP_047280988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
RefSeq Acc Id: XM_047425038   ⟹   XP_047280994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,294,585 (+)NCBI
RefSeq Acc Id: XM_047425043   ⟹   XP_047280999
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,313,298 (+)NCBI
RefSeq Acc Id: XM_047425046   ⟹   XP_047281002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,316,385 (+)NCBI
RefSeq Acc Id: XM_047425051   ⟹   XP_047281007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,267,780 - 211,316,385 (+)NCBI
RefSeq Acc Id: XM_047425052   ⟹   XP_047281008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,295,731 (+)NCBI
RefSeq Acc Id: XM_047425053   ⟹   XP_047281009
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,295,731 (+)NCBI
RefSeq Acc Id: XM_054337618   ⟹   XP_054193593
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337619   ⟹   XP_054193594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337620   ⟹   XP_054193595
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337621   ⟹   XP_054193596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337622   ⟹   XP_054193597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,516,803 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337623   ⟹   XP_054193598
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337624   ⟹   XP_054193599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337625   ⟹   XP_054193600
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,540,170 (+)NCBI
RefSeq Acc Id: XM_054337626   ⟹   XP_054193601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,558,899 (+)NCBI
RefSeq Acc Id: XM_054337627   ⟹   XP_054193602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337628   ⟹   XP_054193603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,513,362 - 210,561,986 (+)NCBI
RefSeq Acc Id: XM_054337629   ⟹   XP_054193604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,541,319 (+)NCBI
RefSeq Acc Id: XM_054337630   ⟹   XP_054193605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,541,319 (+)NCBI
RefSeq Acc Id: XR_007061955
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,313,298 (+)NCBI
RefSeq Acc Id: XR_007061956
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,313,298 (+)NCBI
RefSeq Acc Id: XR_007061957
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,312,399 (+)NCBI
RefSeq Acc Id: XR_007061958
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,366 - 211,313,298 (+)NCBI
RefSeq Acc Id: XR_008486104
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,558,899 (+)NCBI
RefSeq Acc Id: XR_008486105
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,558,899 (+)NCBI
RefSeq Acc Id: XR_008486106
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,558,000 (+)NCBI
RefSeq Acc Id: XR_008486107
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01210,504,931 - 210,558,899 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001129695 (Get FASTA)   NCBI Sequence Viewer  
  NP_001129696 (Get FASTA)   NCBI Sequence Viewer  
  NP_001129697 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336998 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336999 (Get FASTA)   NCBI Sequence Viewer  
  NP_060724 (Get FASTA)   NCBI Sequence Viewer  
  XP_005273248 (Get FASTA)   NCBI Sequence Viewer  
  XP_006711505 (Get FASTA)   NCBI Sequence Viewer  
  XP_011508050 (Get FASTA)   NCBI Sequence Viewer  
  XP_016857250 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280967 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280977 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280988 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280994 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280999 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281002 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281007 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281008 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281009 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193593 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193594 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193595 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193596 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193597 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193598 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193599 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193600 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193601 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193602 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193603 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193604 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193605 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH31608 (Get FASTA)   NCBI Sequence Viewer  
  BAA91872 (Get FASTA)   NCBI Sequence Viewer  
  BAA92581 (Get FASTA)   NCBI Sequence Viewer  
  BAG54764 (Get FASTA)   NCBI Sequence Viewer  
  BAG62571 (Get FASTA)   NCBI Sequence Viewer  
  BAG63899 (Get FASTA)   NCBI Sequence Viewer  
  EAW93423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000355972
  ENSP00000355972.4
  ENSP00000355973
  ENSP00000355973.4
  ENSP00000398558
  ENSP00000398558.2
  ENSP00000413929
  ENSP00000413929.2
  ENSP00000432779
  ENSP00000432779.1
  ENSP00000433441.1
  ENSP00000434181.1
  ENSP00000434605.1
  ENSP00000436057.1
  ENSP00000436838.1
  ENSP00000437048.1
GenBank Protein Q9P2K3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001129695   ⟸   NM_001136223
- Peptide Label: isoform a
- UniProtKB: Q9P2K3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129696   ⟸   NM_001136224
- Peptide Label: isoform b
- UniProtKB: Q9P2K3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_060724   ⟸   NM_018254
- Peptide Label: isoform d
- UniProtKB: Q8N5U3 (UniProtKB/Swiss-Prot),   Q7L9I5 (UniProtKB/Swiss-Prot),   Q5VT47 (UniProtKB/Swiss-Prot),   B4DYY7 (UniProtKB/Swiss-Prot),   B3KYA2 (UniProtKB/Swiss-Prot),   Q9NV83 (UniProtKB/Swiss-Prot),   Q9P2K3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129697   ⟸   NM_001136225
- Peptide Label: isoform c
- UniProtKB: Q9P2K3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005273248   ⟸   XM_005273191
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006711505   ⟸   XM_006711442
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011508050   ⟸   XM_011509748
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016857250   ⟸   XM_017001761
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001336998   ⟸   NM_001350069
- Peptide Label: isoform e
- Sequence:
RefSeq Acc Id: NP_001336999   ⟸   NM_001350070
- Peptide Label: isoform f
- Sequence:
Ensembl Acc Id: ENSP00000398558   ⟸   ENST00000452621
Ensembl Acc Id: ENSP00000436838   ⟸   ENST00000533469
Ensembl Acc Id: ENSP00000433441   ⟸   ENST00000534460
Ensembl Acc Id: ENSP00000436057   ⟸   ENST00000534478
Ensembl Acc Id: ENSP00000413929   ⟸   ENST00000419091
Ensembl Acc Id: ENSP00000434181   ⟸   ENST00000485186
Ensembl Acc Id: ENSP00000355972   ⟸   ENST00000367005
Ensembl Acc Id: ENSP00000355973   ⟸   ENST00000367006
Ensembl Acc Id: ENSP00000432779   ⟸   ENST00000528926
Ensembl Acc Id: ENSP00000437048   ⟸   ENST00000529763
Ensembl Acc Id: ENSP00000434605   ⟸   ENST00000529572
RefSeq Acc Id: XP_047281002   ⟸   XM_047425046
- Peptide Label: isoform X9
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047280977   ⟸   XM_047425021
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047280988   ⟸   XM_047425032
- Peptide Label: isoform X7
RefSeq Acc Id: XP_047280999   ⟸   XM_047425043
- Peptide Label: isoform X9
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047281008   ⟸   XM_047425052
- Peptide Label: isoform X11
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047281009   ⟸   XM_047425053
- Peptide Label: isoform X12
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047280994   ⟸   XM_047425038
- Peptide Label: isoform X8
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047281007   ⟸   XM_047425051
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047280967   ⟸   XM_047425011
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054193602   ⟸   XM_054337627
- Peptide Label: isoform X9
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054193593   ⟸   XM_054337618
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054193596   ⟸   XM_054337621
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054193594   ⟸   XM_054337619
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054193598   ⟸   XM_054337623
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054193595   ⟸   XM_054337620
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054193599   ⟸   XM_054337624
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054193601   ⟸   XM_054337626
- Peptide Label: isoform X9
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054193604   ⟸   XM_054337629
- Peptide Label: isoform X11
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054193605   ⟸   XM_054337630
- Peptide Label: isoform X12
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054193600   ⟸   XM_054337625
- Peptide Label: isoform X8
- UniProtKB: B4DV59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054193603   ⟸   XM_054337628
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054193597   ⟸   XM_054337622
- Peptide Label: isoform X5
Protein Domains
ELM2   REST corepressor helical   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9P2K3-F1-model_v2 AlphaFold Q9P2K3 1-495 view protein structure

Promoters
RGD ID:6786409
Promoter ID:HG_KWN:7202
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001136223,   NM_001136225,   OTTHUMT00000089821,   OTTHUMT00000089822,   OTTHUMT00000089823
Position:
Human AssemblyChrPosition (strand)Source
Build 361209,498,766 - 209,499,497 (+)MPROMDB
RGD ID:6814853
Promoter ID:HG_MRA:1468
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:AK057001
Position:
Human AssemblyChrPosition (strand)Source
Build 361209,555,481 - 209,555,981 (+)MPROMDB
RGD ID:6858898
Promoter ID:EPDNEW_H2614
Type:initiation region
Name:RCOR3_1
Description:REST corepressor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2615  EPDNEW_H2616  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,369 - 211,259,429EPDNEW
RGD ID:6858900
Promoter ID:EPDNEW_H2615
Type:initiation region
Name:RCOR3_2
Description:REST corepressor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2614  EPDNEW_H2616  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,259,975 - 211,260,035EPDNEW
RGD ID:6858902
Promoter ID:EPDNEW_H2616
Type:initiation region
Name:RCOR3_3
Description:REST corepressor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2614  EPDNEW_H2615  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,312,260 - 211,312,320EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25594 AgrOrtholog
COSMIC RCOR3 COSMIC
Ensembl Genes ENSG00000117625 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000367005 ENTREZGENE
  ENST00000367005.8 UniProtKB/Swiss-Prot
  ENST00000367006 ENTREZGENE
  ENST00000367006.8 UniProtKB/Swiss-Prot
  ENST00000419091 ENTREZGENE
  ENST00000419091.7 UniProtKB/Swiss-Prot
  ENST00000452621 ENTREZGENE
  ENST00000452621.6 UniProtKB/Swiss-Prot
  ENST00000485186.1 UniProtKB/TrEMBL
  ENST00000528926 ENTREZGENE
  ENST00000528926.5 UniProtKB/TrEMBL
  ENST00000529572.5 UniProtKB/TrEMBL
  ENST00000529763.5 UniProtKB/TrEMBL
  ENST00000533469.5 UniProtKB/TrEMBL
  ENST00000534460.5 UniProtKB/TrEMBL
  ENST00000534478.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000117625 GTEx
HGNC ID HGNC:25594 ENTREZGENE
Human Proteome Map RCOR3 Human Proteome Map
InterPro ELM2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REST_helical UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trans_reg/Corepressor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55758 UniProtKB/Swiss-Prot
NCBI Gene 55758 ENTREZGENE
OMIM 620464 OMIM
PANTHER REST COREPRESSOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REST COREPRESSOR COREST PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ELM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REST_helical UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134917623 PharmGKB
PRINTS F138DOMAIN UniProtKB/TrEMBL
PROSITE ELM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ELM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B3KYA2 ENTREZGENE
  B4DV59 ENTREZGENE, UniProtKB/TrEMBL
  B4DYY7 ENTREZGENE
  E9PPC5_HUMAN UniProtKB/TrEMBL
  E9PQE5_HUMAN UniProtKB/TrEMBL
  E9PR63_HUMAN UniProtKB/TrEMBL
  H0YDD7_HUMAN UniProtKB/TrEMBL
  H0YDR8_HUMAN UniProtKB/TrEMBL
  H0YF22_HUMAN UniProtKB/TrEMBL
  Q5VT47 ENTREZGENE
  Q7L9I5 ENTREZGENE
  Q8N5U3 ENTREZGENE
  Q9NV83 ENTREZGENE
  Q9P2K3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3KYA2 UniProtKB/Swiss-Prot
  B4DYY7 UniProtKB/Swiss-Prot
  Q5VT47 UniProtKB/Swiss-Prot
  Q7L9I5 UniProtKB/Swiss-Prot
  Q8N5U3 UniProtKB/Swiss-Prot
  Q9NV83 UniProtKB/Swiss-Prot