RCOR3 (REST corepressor 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RCOR3 (REST corepressor 3) Sus scrofa
Analyze
Symbol: RCOR3
Name: REST corepressor 3
RGD ID: 14122052
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); histone deacetylase complex (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,833,399 - 131,890,799 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,833,395 - 131,890,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,906,668 - 144,924,011 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
RCOR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,833,399 - 131,890,799 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,833,395 - 131,890,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,906,668 - 144,924,011 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RCOR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,259,366 - 211,316,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,258,377 - 211,316,385 (+)EnsemblGRCh38hg38GRCh38
GRCh371211,432,708 - 211,489,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361209,499,949 - 209,556,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 341207,821,720 - 207,877,972NCBI
Celera1184,656,707 - 184,716,396 (+)NCBICelera
Cytogenetic Map1q32.2-q32.3NCBI
HuRef1182,109,654 - 182,166,679 (+)NCBIHuRef
CHM1_11212,705,251 - 212,762,151 (+)NCBICHM1_1
T2T-CHM13v2.01210,504,931 - 210,561,986 (+)NCBIT2T-CHM13v2.0
Rcor3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,782,842 - 191,822,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,782,846 - 191,822,359 (-)EnsemblGRCm39 Ensembl
GRCm381192,098,546 - 192,138,074 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1192,098,546 - 192,138,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv371193,924,340 - 193,961,669 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,800,994 - 193,838,511 (-)NCBIMGSCv36mm8
Celera1198,993,375 - 199,030,668 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.23NCBI
Rcor3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813106,156,166 - 106,196,542 (-)NCBIGRCr8
mRatBN7.213103,624,966 - 103,665,565 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13103,624,971 - 103,665,565 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13106,147,164 - 106,185,492 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013107,530,997 - 107,569,325 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,745,999 - 104,784,327 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,822,149 - 110,864,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,822,150 - 110,864,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013115,381,178 - 115,422,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13103,066,186 - 103,096,345 (-)NCBICelera
Cytogenetic Map13q27NCBI
Rcor3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554891,018,529 - 1,066,807 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554891,016,124 - 1,059,795 (-)NCBIChiLan1.0ChiLan1.0
RCOR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2138,091,704 - 38,148,935 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1138,056,730 - 38,114,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01186,822,259 - 186,879,534 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11191,686,975 - 191,743,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1191,686,125 - 191,743,487 (+)Ensemblpanpan1.1panPan2
RCOR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.179,720,401 - 9,773,223 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl79,719,411 - 9,789,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha79,295,402 - 9,348,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.079,422,869 - 9,476,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl79,422,814 - 9,475,915 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.179,346,213 - 9,399,331 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.079,447,751 - 9,501,005 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.079,572,124 - 9,625,603 (+)NCBIUU_Cfam_GSD_1.0
Rcor3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934464,746,303 - 64,790,969 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365571,986,630 - 2,031,078 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365571,986,587 - 2,031,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCOR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12518,184,375 - 18,247,432 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2518,184,011 - 18,247,398 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605518,716,347 - 18,774,169 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcor3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807945,783 - 983,581 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807943,599 - 990,205 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RCOR3
2103 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 1 11 1
Low 9 4 4 2 12 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000026117   ⟹   ENSSSCP00000022996
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,833,401 - 131,890,777 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000050585   ⟹   ENSSSCP00000052168
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,833,399 - 131,890,769 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061679   ⟹   ENSSSCP00000048667
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,834,828 - 131,890,799 (-)Ensembl
RefSeq Acc Id: XM_021063868   ⟹   XP_020919527
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,395 - 131,890,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063869   ⟹   XP_020919528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,398 - 131,890,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063870   ⟹   XP_020919529
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,398 - 131,890,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063871   ⟹   XP_020919530
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,398 - 131,890,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063872   ⟹   XP_020919531
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,398 - 131,890,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063873   ⟹   XP_020919532
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,767 - 131,890,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063874   ⟹   XP_020919533
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,767 - 131,890,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063875   ⟹   XP_020919534
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,767 - 131,890,811 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336049
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,833,398 - 131,890,822 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020919527 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919528 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919529 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919530 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919531 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919532 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919533 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919534 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000022996
  ENSSSCP00000022996.4
  ENSSSCP00000048667
  ENSSSCP00000048667.1
  ENSSSCP00000052168
  ENSSSCP00000052168.1
  ENSSSCP00015030917.1
  ENSSSCP00025041994.1
  ENSSSCP00025042072.1
  ENSSSCP00025042157.1
  ENSSSCP00025042229.1
  ENSSSCP00030042233.1
  ENSSSCP00030042244.1
  ENSSSCP00030042262.1
  ENSSSCP00035012937.1
  ENSSSCP00035012943.1
  ENSSSCP00035012950.1
  ENSSSCP00035012952.1
  ENSSSCP00040037984.1
  ENSSSCP00040038072.1
  ENSSSCP00040038155.1
  ENSSSCP00040038232.1
  ENSSSCP00045026922.1
  ENSSSCP00045026987.1
  ENSSSCP00045027057.1
  ENSSSCP00045027117.1
  ENSSSCP00050039044.1
  ENSSSCP00050039048.1
  ENSSSCP00050039050.1
  ENSSSCP00055008005.1
  ENSSSCP00055008041.1
  ENSSSCP00055008080.1
  ENSSSCP00055008105.1
  ENSSSCP00060028414.1
  ENSSSCP00060028419.1
  ENSSSCP00060028433.1
  ENSSSCP00065020439.1
  ENSSSCP00065020447.1
  ENSSSCP00065020448.1
  ENSSSCP00065020451.1
  ENSSSCP00070015636.1
  ENSSSCP00070015641.1
  ENSSSCP00070015650.1
  ENSSSCP00070015666.1
RefSeq Acc Id: XP_020919527   ⟸   XM_021063868
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BLK7 (UniProtKB/TrEMBL),   A0A4X1TKH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919531   ⟸   XM_021063872
- Peptide Label: isoform X5
- UniProtKB: A0A287B7T4 (UniProtKB/TrEMBL),   A0A4X1TGF3 (UniProtKB/TrEMBL),   A0A480QTS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919528   ⟸   XM_021063869
- Peptide Label: isoform X2
- UniProtKB: A0A8D1PTJ1 (UniProtKB/TrEMBL),   I3LG03 (UniProtKB/TrEMBL),   A0A4X1TKH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919529   ⟸   XM_021063870
- Peptide Label: isoform X3
- UniProtKB: A0A8D1VTE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919530   ⟸   XM_021063871
- Peptide Label: isoform X4
- UniProtKB: A0A287AWZ1 (UniProtKB/TrEMBL),   A0A4X1TKF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919534   ⟸   XM_021063875
- Peptide Label: isoform X6
- UniProtKB: A0A4X1TKH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919532   ⟸   XM_021063873
- Peptide Label: isoform X6
- UniProtKB: A0A4X1TKH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919533   ⟸   XM_021063874
- Peptide Label: isoform X6
- UniProtKB: A0A4X1TKH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000052168   ⟸   ENSSSCT00000050585
RefSeq Acc Id: ENSSSCP00000022996   ⟸   ENSSSCT00000026117
RefSeq Acc Id: ENSSSCP00000048667   ⟸   ENSSSCT00000061679
Protein Domains
ELM2   SANT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028293 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015057672 UniProtKB/TrEMBL
  ENSSSCG00025069641 UniProtKB/TrEMBL
  ENSSSCG00030065693 UniProtKB/TrEMBL
  ENSSSCG00035024951 UniProtKB/TrEMBL
  ENSSSCG00040063463 UniProtKB/TrEMBL
  ENSSSCG00045022688 UniProtKB/TrEMBL
  ENSSSCG00050066693 UniProtKB/TrEMBL
  ENSSSCG00055005186 UniProtKB/TrEMBL
  ENSSSCG00060048849 UniProtKB/TrEMBL
  ENSSSCG00065034881 UniProtKB/TrEMBL
  ENSSSCG00070009666 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026117 ENTREZGENE
  ENSSSCT00000026117.4 UniProtKB/TrEMBL
  ENSSSCT00000050585 ENTREZGENE
  ENSSSCT00000050585.2 UniProtKB/TrEMBL
  ENSSSCT00000061679 ENTREZGENE
  ENSSSCT00000061679.3 UniProtKB/TrEMBL
  ENSSSCT00015076888.1 UniProtKB/TrEMBL
  ENSSSCT00025095666.1 UniProtKB/TrEMBL
  ENSSSCT00025095830.1 UniProtKB/TrEMBL
  ENSSSCT00025095998.1 UniProtKB/TrEMBL
  ENSSSCT00025096192.1 UniProtKB/TrEMBL
  ENSSSCT00030091782.1 UniProtKB/TrEMBL
  ENSSSCT00030091808.1 UniProtKB/TrEMBL
  ENSSSCT00030091836.1 UniProtKB/TrEMBL
  ENSSSCT00035032824.1 UniProtKB/TrEMBL
  ENSSSCT00035032837.1 UniProtKB/TrEMBL
  ENSSSCT00035032847.1 UniProtKB/TrEMBL
  ENSSSCT00035032855.1 UniProtKB/TrEMBL
  ENSSSCT00040086596.1 UniProtKB/TrEMBL
  ENSSSCT00040086768.1 UniProtKB/TrEMBL
  ENSSSCT00040086908.1 UniProtKB/TrEMBL
  ENSSSCT00040087070.1 UniProtKB/TrEMBL
  ENSSSCT00045038725.1 UniProtKB/TrEMBL
  ENSSSCT00045038819.1 UniProtKB/TrEMBL
  ENSSSCT00045038912.1 UniProtKB/TrEMBL
  ENSSSCT00045038994.1 UniProtKB/TrEMBL
  ENSSSCT00050090857.1 UniProtKB/TrEMBL
  ENSSSCT00050090867.1 UniProtKB/TrEMBL
  ENSSSCT00050090870.1 UniProtKB/TrEMBL
  ENSSSCT00055010129.1 UniProtKB/TrEMBL
  ENSSSCT00055010180.1 UniProtKB/TrEMBL
  ENSSSCT00055010229.1 UniProtKB/TrEMBL
  ENSSSCT00055010259.1 UniProtKB/TrEMBL
  ENSSSCT00060066346.1 UniProtKB/TrEMBL
  ENSSSCT00060066356.1 UniProtKB/TrEMBL
  ENSSSCT00060066381.1 UniProtKB/TrEMBL
  ENSSSCT00065047476.1 UniProtKB/TrEMBL
  ENSSSCT00065047488.1 UniProtKB/TrEMBL
  ENSSSCT00065047491.1 UniProtKB/TrEMBL
  ENSSSCT00065047495.1 UniProtKB/TrEMBL
  ENSSSCT00070018824.1 UniProtKB/TrEMBL
  ENSSSCT00070018829.1 UniProtKB/TrEMBL
  ENSSSCT00070018839.1 UniProtKB/TrEMBL
  ENSSSCT00070018858.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1880 UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro ELM2_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  REST_helical UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
NCBI Gene RCOR3 ENTREZGENE
PANTHER REST COREPRESSOR 3 UniProtKB/TrEMBL
  REST COREPRESSOR COREST PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ELM2 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
  REST_helical UniProtKB/TrEMBL
PROSITE ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287AWZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B7T4 ENTREZGENE, UniProtKB/TrEMBL
  A0A480QTS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TGF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TKF0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TKG7_PIG UniProtKB/TrEMBL
  A0A4X1TKH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PTJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VTE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BLK7 ENTREZGENE, UniProtKB/TrEMBL
  I3LG03 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92185 ENTREZGENE