GJB3 (gap junction protein beta 3) - Rat Genome Database

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Gene: GJB3 (gap junction protein beta 3) Homo sapiens
Analyze
Symbol: GJB3
Name: gap junction protein beta 3
RGD ID: 1347813
HGNC Page HGNC:4285
Description: Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within placenta development. Located in cell junction and intracellular membrane-bounded organelle. Implicated in autosomal dominant nonsyndromic deafness 2B; autosomal recessive nonsyndromic deafness 1A; colorectal adenocarcinoma; erythrokeratodermia variabilis; and erythrokeratodermia variabilis et progressiva 1.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: connexin 31; connexin-31; CX31; DFNA2; DFNA2B; EKV; EKVP1; erythrokeratodermia variabilis; FLJ22486; gap junction beta-3 protein; gap junction protein, beta 3, 31kDa; gap junction protein, beta 3, 31kda (connexin 31); MGC102938
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38134,781,214 - 34,786,364 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl134,781,214 - 34,786,369 (+)EnsemblGRCh38hg38GRCh38
GRCh37135,246,815 - 35,251,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36135,019,377 - 35,024,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 34134,915,882 - 34,921,057NCBI
Celera133,520,514 - 33,525,691 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef133,364,392 - 33,369,569 (+)NCBIHuRef
CHM1_1135,362,359 - 35,367,536 (+)NCBICHM1_1
T2T-CHM13v2.0134,643,843 - 34,648,993 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
GJB3Humancolorectal adenocarcinoma susceptibilityIAGP 152177496DNA:SNP:3'utr: (rs9118) C>G (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 12050153DNA:missense mutation:cds:p.R42P (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 12436729DNA:missense mutations:exon:p.G12R (34G>C), p.G12D (35G>A), p.C86S (256T>A) (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 11097171DNA:missense mutation:exon:p.R42P (125G>C) (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 12436731DNA:missense mutation:exon:p.L209F (625C>T) (human) RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 12436734DNA:missense mutation:exon:p.L135V (c.403C>G) (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 1578480DNA:missense mutations:cds:p.G12D and p.L209F (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 11251416DNA:missense mutation:exon:p.T202N (c.605C>A) (human)RGD 
GJB3Humanerythrokeratodermia variabilis  IAGP 12437067DNA:missense mutation:exon:p.G45E (c.134G>A)(human)RGD 
GJB3HumanErythrokeratodermia Variabilis, Autosomal Recessive  IAGP 12050155DNA:missense mutation:CDS:p.L34P (101T>C) (human)RGD 
GJB3HumanErythrokeratodermia Variabilis, Autosomal Recessive  IAGP 12436733DNA:missense mutation:exon:p.V30I (c.G88A) (human)RGD 
GJB3HumanNonsyndromic Sensorineural Hearing Loss no_associationIAGP 12050154DNA:missense mutation more ...RGD 
GJB3HumanNonsyndromic Sensorineural Hearing Loss  IAGP 7364900DNA:missense mutations:cds:p.N166S and p.A194T (human)RGD 
GJB3HumanNonsyndromic Sensorineural Hearing Loss  IAGP 1300214DNA:nonsense mutation more ...RGD 
GJB3Humanplacental insufficiency  ISOGjb3 (Mus musculus)12436730 RGD 
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Original Reference(s)
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:25741868
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:24033266 more ...
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:25741868 and PMID:28492532
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:16077902 more ...
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:25214170 more ...
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:12019212 and PMID:25741868
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:19050930 more ...
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 2bClinVarPMID:24033266 more ...
GJB3Humanautosomal recessive nonsyndromic deafness  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessiveClinVarPMID:10587579
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness more ...ClinVarPMID:19050930
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVarPMID:25741868
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVarPMID:25741868 and PMID:28492532
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVarPMID:12791041 more ...
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness more ...ClinVarPMID:19050930 more ...
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVarPMID:24033266 more ...
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVar 
GJB3Humanautosomal recessive nonsyndromic deafness 8  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 10ClinVarPMID:25741868
GJB3HumanCharcot-Marie-Tooth disease dominant intermediate C  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate CClinVarPMID:28492532
GJB3Humanerythrokeratodermia variabilis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ERYTHROKERATODERMIA and PROGRESSIVE SYMMETRICClinVarPMID:25741868
GJB3Humanerythrokeratodermia variabilis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ERYTHROKERATODERMIA and PROGRESSIVE SYMMETRICClinVarPMID:24033266 more ...
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Original Reference(s)
GJB3Humanautosomal dominant nonsyndromic deafness 2B  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
GJB3Humanautosomal recessive nonsyndromic deafness 1A  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
GJB3HumanDeafness  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:9843210
GJB3Humanepidermolytic hyperkeratosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16297190
GJB3Humanerythrokeratodermia variabilis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:9843209
GJB3Humanperipheral nervous system disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:11309368
GJB3Humansensorineural hearing loss  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:11309368
GJB3Humanskin disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16372802
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Original Reference(s)
GJB3Humanerythrokeratodermia variabilis  ISSGjb3 (Mus musculus)13592920 MouseDO 
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Original Reference(s)
GJB3Humanautosomal dominant nonsyndromic deafness 2B  IAGP 7240710 OMIM 
GJB3Humanautosomal recessive nonsyndromic deafness 1A  IAGP 7240710 OMIM 
GJB3Humanerythrokeratodermia variabilis et progressiva 1  IAGP 7240710 OMIM 

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GJB3Human1,1,1-trichloroethane increases expressionISOGjb3 (Mus musculus)64804641 more ...CTDPMID:25270620
GJB3Human1,2-dichloroethane decreases expressionISOGjb3 (Mus musculus)6480464ethylene dichloride results in decreased expression of GJB3 mRNACTDPMID:28960355
GJB3Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol binds to ESR2 protein] which results in increased expression of GJB3 mRNACTDPMID:20404318
GJB3Human17beta-hydroxy-5alpha-androstan-3-one decreases expressionISOGjb3 (Mus musculus)6480464Dihydrotestosterone results in decreased expression of GJB3 mRNACTDPMID:17023530
GJB3Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOGjb3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of GJB3 mRNACTDPMID:19933214
GJB3Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOGjb3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of GJB3 mRNACTDPMID:21570461
GJB3Human4,4'-sulfonyldiphenol decreases expressionISOGjb3 (Mus musculus)6480464bisphenol S results in decreased expression of GJB3 mRNACTDPMID:30951980
GJB3Human4,4'-sulfonyldiphenol affects methylationISOGjb3 (Mus musculus)6480464bisphenol S affects the methylation of GJB3 geneCTDPMID:31683443
GJB3Human4-hydroxyphenyl retinamide increases expressionISOGjb3 (Mus musculus)6480464Fenretinide results in increased expression of GJB3 mRNACTDPMID:28973697
GJB3Human5-aza-2'-deoxycytidine multiple interactionsEXP 6480464Decitabine inhibits the reaction [Smoke results in decreased expression of GJB3 mRNA]CTDPMID:21095227
GJB3Human5-aza-2'-deoxycytidine decreases expressionISOGjb3 (Mus musculus)6480464Decitabine results in decreased expression of GJB3 mRNACTDPMID:19222872
GJB3Humanactinomycin D multiple interactionsEXP 6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of GJB3 mRNACTDPMID:38460933
GJB3Humanall-trans-retinoic acid multiple interactionsISOGjb3 (Mus musculus)6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of GJB3 mRNACTDPMID:36189433
GJB3Humanalpha-Zearalanol multiple interactionsISOGjb3 (Rattus norvegicus)6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of GJB3 mRNACTDPMID:35163327
GJB3Humanammonium chloride affects expressionISOGjb3 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of GJB3 mRNACTDPMID:16483693
GJB3Humanarsane affects methylationEXP 6480464Arsenic affects the methylation of GJB3 geneCTDPMID:25304211
GJB3Humanarsane increases expressionISOGjb3 (Mus musculus)6480464Arsenic results in increased expression of GJB3 mRNACTDPMID:36720308
GJB3Humanarsenic atom affects methylationEXP 6480464Arsenic affects the methylation of GJB3 geneCTDPMID:25304211
GJB3Humanarsenic atom increases expressionISOGjb3 (Mus musculus)6480464Arsenic results in increased expression of GJB3 mRNACTDPMID:36720308
GJB3Humanarsenous acid decreases response to substanceEXP 6480464GJB3 protein results in decreased susceptibility to Arsenic TrioxideCTDPMID:20707922

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Biological Process

  

Cellular Component
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Original Reference(s)
GJB3Humananchoring junction located_inIEAUniProtKB-KW:KW-0965150520179 UniProtGO_REF:0000043
GJB3Humancell junction located_inIDA 150520179 HPAGO_REF:0000052
GJB3Humancell-cell junction located_inIEAUniProtKB:P28231 and ensembl:ENSMUSP00000046755150520179 EnsemblGO_REF:0000107
GJB3Humanconnexin complex part_ofIEAInterPro:IPR000500 more ...150520179 InterProGO_REF:0000002
GJB3Humanconnexin complex part_ofIBAMGI:2384150 more ...150520179 GO_CentralGO_REF:0000033
GJB3Humancytoplasm located_inIEAUniProtKB:P28231 and ensembl:ENSMUSP00000046755150520179 EnsemblGO_REF:0000107
GJB3Humangap junction  ISOGjb3 (Rattus norvegicus)9068941 RGDPMID:12123633 and REF_RGD_ID:12738139
GJB3Humangap junction located_inIEAUniProtKB:P28231 and ensembl:ENSMUSP00000046755150520179 EnsemblGO_REF:0000107
GJB3Humangap junction located_inIEAUniProtKB-KW:KW-0303150520179 UniProtGO_REF:0000043
GJB3Humangap junction located_inIEAUniProtKB-SubCell:SL-0124150520179 UniProtGO_REF:0000044
GJB3Humangap junction located_inNAS 150520179 PMID:9704026UniProtPMID:9704026
GJB3Humanintracellular membrane-bounded organelle located_inIDA 150520179 HPAGO_REF:0000052
GJB3Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
GJB3Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
GJB3Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
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Molecular Function

  

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Original Reference(s)
GJB3HumanHigh-frequency sensorineural hearing impairment  IAGP 1300214DNA:nonsense mutation more ...RGD 
GJB3HumanHyperkeratosis with erythema  IAGP 1578480DNA:missense mutations:cds:p.G12D and p.L209FRGD 
GJB3HumanMetabolic acidosis  IAGP 1302549DNA:missense mutations:cds:multiple RGD 
GJB3HumanNeoplasm of the large intestine susceptibilityIAGP 152177496DNA:SNP:3'utr: (rs9118) C>G (human)RGD 
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Original Reference(s)
GJB3HumanAbnormal blistering of the skin  IAGP 8699517 HPOORPHA:317
GJB3HumanAbnormal cardiovascular system morphology  IAGP 8699517 HPOORPHA:317
GJB3HumanAbnormal hair morphology  IAGP 8699517 HPOORPHA:317
GJB3HumanAbnormal nail morphology  IAGP 8699517 HPOORPHA:317
GJB3HumanAbnormal testis morphology  IAGP 8699517 HPOORPHA:317
GJB3HumanAbnormal vestibular function  IAGP 8699517 HPOMIM:220290
GJB3HumanAlopecia  IAGP 8699517 HPOORPHA:317
GJB3HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:612644
GJB3HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:133200
GJB3HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:220290
GJB3HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:133200
GJB3HumanBrachydactyly  IAGP 8699517 HPOORPHA:317
GJB3HumanCataract  IAGP 8699517 HPOORPHA:317
GJB3HumanCorneal opacity  IAGP 8699517 HPOORPHA:317
GJB3HumanCutaneous photosensitivity  IAGP 8699517 HPOORPHA:317
GJB3HumanDiabetes mellitus  IAGP 8699517 HPOORPHA:317
GJB3HumanDigenic inheritance  IAGP 8699517 HPOMIM:220290
GJB3HumanDry skin  IAGP 8699517 HPOORPHA:317
GJB3HumanEpidermal acanthosis  IAGP 8699517 HPOMIM:133200
GJB3HumanErythema  IAGP 8699517 HPOORPHA:317
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GJB3HumanHearing impairment  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:11309368 more ...

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#
Reference Title
Reference Citation
1. Clinical and genetic heterogeneity of erythrokeratoderma variabilis. Common JE, etal., J Invest Dermatol. 2005 Nov;125(5):920-7.
2. Lack of association between Connexin 31 (GJB3) alterations and sensorineural deafness in Austria. Frei K, etal., Hear Res. 2004 Aug;194(1-2):81-6.
3. Erythrokeratoderma variabilis caused by a recessive mutation in GJB3. Fuchs-Telem D, etal., Clin Exp Dermatol. 2011 Jun;36(4):406-11. doi: 10.1111/j.1365-2230.2010.03986.x.
4. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
5. A mutation in GJB3 is associated with recessive erythrokeratodermia variabilis (EKV) and leads to defective trafficking of the connexin 31 protein. Gottfried I, etal., Hum Mol Genet. 2002 May 15;11(11):1311-6.
6. Impact of Genetic Variation in MicroRNA-binding Site on Susceptibility to Colorectal Cancer. Kang BW, etal., Anticancer Res. 2016 Jul;36(7):3353-61.
7. Digenic inheritance of non-syndromic deafness caused by mutations at the gap junction proteins Cx26 and Cx31. Liu XZ, etal., Hum Genet. 2009 Feb;125(1):53-62. doi: 10.1007/s00439-008-0602-9. Epub 2008 Dec 3.
8. A new, recurrent mutation of GJB3 (Cx31) in erythrokeratodermia variabilis. Morley SM, etal., Br J Dermatol. 2005 Jun;152(6):1143-8.
9. Clinical findings and biochemical and molecular analysis of four patients with holocarboxylase synthetase deficiency. Morrone A, etal., Am J Med Genet 2002 Jul 22;111(1):10-8.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. Connexin31-deficiency in mice causes transient placental dysmorphogenesis but does not impair hearing and skin differentiation. Plum A, etal., Dev Biol. 2001 Mar 15;231(2):334-47.
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
15. The spectrum of mutations in erythrokeratodermias--novel and de novo mutations in GJB3. Richard G, etal., Hum Genet. 2000 Mar;106(3):321-9.
16. Mutations in the human connexin gene GJB3 cause erythrokeratodermia variabilis. Richard G, etal., Nat Genet. 1998 Dec;20(4):366-9.
17. Novel and recurrent connexin 30.3 and connexin 31 mutations associated with erythrokeratoderma variabilis. Scott CA, etal., Clin Exp Dermatol. 2011 Jan;36(1):88-90.
18. The novel GJB3 mutation p.Thr202Asn in the M4 transmembrane domain underlies erythrokeratodermia variabilis. Sugiura K, etal., Br J Dermatol. 2015 Jul;173(1):309-11. doi: 10.1111/bjd.13641. Epub 2015 May 28.
19. A missense mutation in the GJB3 gene responsible for erythrokeratodermia variabilis in a Chinese family. Wang W, etal., Clin Exp Dermatol. 2012 Dec;37(8):919-21. doi: 10.1111/j.1365-2230.2012.04406.x. Epub 2012 Jun 8.
20. Identification of a novel mutation R42P in the gap junction protein beta-3 associated with autosomal dominant erythrokeratoderma variabilis. Wilgoss A, etal., J Invest Dermatol. 1999 Dec;113(6):1119-22.
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PMID:8035838   PMID:9126484   PMID:9704026   PMID:10587579   PMID:10757647   PMID:10790215   PMID:11309368   PMID:12154091   PMID:12165562   PMID:12176042   PMID:12477932   PMID:12630965  
PMID:12702148   PMID:14583444   PMID:15489334   PMID:16077902   PMID:16341674   PMID:16406239   PMID:16549784   PMID:16710414   PMID:17207965   PMID:17672988   PMID:18338563   PMID:18607988  
PMID:18809214   PMID:18988928   PMID:19027966   PMID:19254696   PMID:19523148   PMID:19558834   PMID:19744334   PMID:19755382   PMID:19814620   PMID:19864490   PMID:20301449   PMID:20301607  
PMID:20593197   PMID:20627047   PMID:20668687   PMID:21055240   PMID:21198793   PMID:21873635   PMID:21916817   PMID:21950330   PMID:21988832   PMID:22393412   PMID:22617145   PMID:23638949  
PMID:23678955   PMID:24913888   PMID:26037344   PMID:26251042   PMID:27176802   PMID:29106878   PMID:29570224   PMID:29926981   PMID:29992552   PMID:30036422   PMID:30235673   PMID:30298483  
PMID:31035178   PMID:31599015   PMID:32296183   PMID:32645618   PMID:33961781   PMID:38029595   PMID:38956497  



GJB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38134,781,214 - 34,786,364 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl134,781,214 - 34,786,369 (+)EnsemblGRCh38hg38GRCh38
GRCh37135,246,815 - 35,251,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36135,019,377 - 35,024,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 34134,915,882 - 34,921,057NCBI
Celera133,520,514 - 33,525,691 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef133,364,392 - 33,369,569 (+)NCBIHuRef
CHM1_1135,362,359 - 35,367,536 (+)NCBICHM1_1
T2T-CHM13v2.0134,643,843 - 34,648,993 (+)NCBIT2T-CHM13v2.0
Gjb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394127,219,028 - 127,224,633 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4127,219,028 - 127,224,637 (-)EnsemblGRCm39 Ensembl
GRCm384127,325,235 - 127,330,836 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4127,325,235 - 127,330,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv374127,002,479 - 127,008,080 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364126,827,539 - 126,831,465 (-)NCBIMGSCv36mm8
Celera4125,659,630 - 125,665,228 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map461.48NCBI
Gjb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,933,692 - 144,939,435 (-)NCBIGRCr8
mRatBN7.25139,649,227 - 139,654,970 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5139,649,195 - 139,654,980 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5142,344,777 - 142,345,589 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05144,114,766 - 144,115,578 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05144,115,567 - 144,116,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05145,390,590 - 145,397,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5145,391,311 - 145,392,123 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05149,158,599 - 149,164,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45146,771,804 - 146,772,616 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15146,781,842 - 146,782,655 (-)NCBI
Celera5138,143,911 - 138,144,723 (-)NCBICelera
Cytogenetic Map5q36NCBI
Gjb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545212,892,687 - 12,896,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545212,892,687 - 12,896,290 (+)NCBIChiLan1.0ChiLan1.0
GJB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21192,059,544 - 192,064,679 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11191,180,713 - 191,185,856 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,048,136 - 34,053,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1135,229,660 - 35,234,821 (+)NCBIpanpan1.1PanPan1.1panPan2
GJB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,175,010 - 7,177,145 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,413,106 - 7,418,450 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,319,962 - 7,325,307 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,320,683 - 7,321,495 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1157,182,367 - 7,187,711 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,230,346 - 7,235,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,244,564 - 7,249,909 (-)NCBIUU_Cfam_GSD_1.0
Gjb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505851,602,426 - 51,606,586 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647417,429,926 - 17,430,729 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647417,427,255 - 17,431,368 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GJB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,031,849 - 91,037,542 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1691,031,378 - 91,037,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GJB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12098,100,285 - 98,106,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2098,102,413 - 98,103,225 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603318,734,683 - 18,739,822 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gjb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476417,829,467 - 17,833,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476417,829,214 - 17,833,509 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GJB3
207 total Variants

1 to 10 of 237 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_024009.3(GJB3):c.34G>C (p.Gly12Arg) single nucleotide variant Erythrokeratodermia variabilis et progressiva 1 [RCV000006855] Chr1:34784796 [GRCh38]
Chr1:35250397 [GRCh37]
Chr1:1p34.3
pathogenic
NM_024009.3(GJB3):c.35G>A (p.Gly12Asp) single nucleotide variant Erythrokeratodermia variabilis et progressiva 1 [RCV000006856]|not provided [RCV002512854] Chr1:34784797 [GRCh38]
Chr1:35250398 [GRCh37]
Chr1:1p34.3
pathogenic
NM_024009.3(GJB3):c.256T>A (p.Cys86Ser) single nucleotide variant Erythrokeratodermia variabilis et progressiva 1 [RCV000006857] Chr1:34785018 [GRCh38]
Chr1:35250619 [GRCh37]
Chr1:1p34.3
pathogenic
NM_024009.3(GJB3):c.547G>A (p.Glu183Lys) single nucleotide variant Autosomal dominant nonsyndromic hearing loss 2B [RCV000006858]|Erythrokeratodermia variabilis et progressiva 1 [RCV000377207]|GJB3-related disorder [RCV004751206]|not provided [RCV000724272]|not specified [RCV000175942] Chr1:34785309 [GRCh38]
Chr1:35250910 [GRCh37]
Chr1:1p34.3
pathogenic|likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_024009.3(GJB3):c.538C>T (p.Arg180Ter) single nucleotide variant Autosomal dominant nonsyndromic hearing loss 2B [RCV000006859]|not provided [RCV001762035]|not specified [RCV000150742] Chr1:34785300 [GRCh38]
Chr1:35250901 [GRCh37]
Chr1:1p34.3
pathogenic|uncertain significance
NM_024009.3(GJB3):c.421_423del (p.Ile141del) deletion Hearing loss, autosomal recessive [RCV000006860] Chr1:34785183..34785185 [GRCh38]
Chr1:35250784..35250786 [GRCh37]
Chr1:1p34.3
pathogenic|uncertain significance
NM_024009.3(GJB3):c.421A>G (p.Ile141Val) single nucleotide variant Hearing loss, autosomal recessive [RCV000006861] Chr1:34785183 [GRCh38]
Chr1:35250784 [GRCh37]
Chr1:1p34.3
pathogenic|uncertain significance
NM_024009.3(GJB3):c.125G>C (p.Arg42Pro) single nucleotide variant Erythrokeratodermia variabilis et progressiva 1 [RCV000006862] Chr1:34784887 [GRCh38]
Chr1:35250488 [GRCh37]
Chr1:1p34.3
pathogenic
NM_024009.3(GJB3):c.196_198del (p.Asp66del) deletion Deafness, autosomal dominant, with peripheral neuropathy [RCV000006863]|Hearing impairment [RCV002243625]|not provided [RCV000345579]|not specified [RCV002468963] Chr1:34784956..34784958 [GRCh38]
Chr1:35250557..35250559 [GRCh37]
Chr1:1p34.3
pathogenic|conflicting interpretations of pathogenicity|uncertain significance
NM_024009.3(GJB3):c.101T>C (p.Leu34Pro) single nucleotide variant Autosomal dominant nonsyndromic hearing loss 2B [RCV004584593]|Erythrokeratodermia variabilis et progressiva 1 [RCV000006864] Chr1:34784863 [GRCh38]
Chr1:35250464 [GRCh37]
Chr1:1p34.3
pathogenic
1 to 10 of 237 rows

Predicted Target Of
Summary Value
Count of predictions:1061
Count of miRNA genes:350
Interacting mature miRNAs:385
Transcripts:ENST00000373362, ENST00000373366
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

GJB3_971  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37135,251,284 - 35,252,037UniSTSGRCh37
Build 36135,023,871 - 35,024,624RGDNCBI36
Celera133,525,008 - 33,525,761RGD
HuRef133,368,886 - 33,369,639UniSTS
SHGC-74581  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37135,251,734 - 35,251,866UniSTSGRCh37
Build 36135,024,321 - 35,024,453RGDNCBI36
Celera133,525,458 - 33,525,590RGD
Cytogenetic Map1p34UniSTS
HuRef133,369,336 - 33,369,468UniSTS
TNG Radiation Hybrid Map116464.0UniSTS
GeneMap99-GB4 RH Map1109.71UniSTS
NCBI RH Map1224.7UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1174 2379 2741 2168 4733 1646 2238 4 575 1229 418 2197 6302 5622 22 3538 754 1698 1550 174 1


1 to 21 of 21 rows
RefSeq Transcripts NG_008309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001005752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB839053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB839054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB839055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF099730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ004856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL547036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE673240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM763034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM846348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OL471368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 21 of 21 rows

Ensembl Acc Id: ENST00000373362   ⟹   ENSP00000362460
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl134,782,278 - 34,786,369 (+)Ensembl
Ensembl Acc Id: ENST00000373366   ⟹   ENSP00000362464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl134,781,214 - 34,786,364 (+)Ensembl
RefSeq Acc Id: NM_001005752   ⟹   NP_001005752
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38134,782,268 - 34,786,364 (+)NCBI
GRCh37135,246,790 - 35,251,967 (+)ENTREZGENE
Build 36135,020,498 - 35,024,554 (+)NCBI Archive
HuRef133,364,392 - 33,369,569 (+)ENTREZGENE
CHM1_1135,363,480 - 35,367,536 (+)NCBI
T2T-CHM13v2.0134,644,897 - 34,648,993 (+)NCBI
Sequence:
RefSeq Acc Id: NM_024009   ⟹   NP_076872
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38134,781,214 - 34,786,364 (+)NCBI
GRCh37135,246,790 - 35,251,967 (+)ENTREZGENE
Build 36135,019,377 - 35,024,552 (+)NCBI Archive
HuRef133,364,392 - 33,369,569 (+)ENTREZGENE
CHM1_1135,362,359 - 35,367,534 (+)NCBI
T2T-CHM13v2.0134,643,843 - 34,648,993 (+)NCBI
Sequence:
RefSeq Acc Id: NP_076872   ⟸   NM_024009
- UniProtKB: B2R790 (UniProtKB/Swiss-Prot),   Q2TAZ8 (UniProtKB/Swiss-Prot),   O75712 (UniProtKB/Swiss-Prot),   A0A654ICK0 (UniProtKB/TrEMBL),   A1YRJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001005752   ⟸   NM_001005752
- UniProtKB: B2R790 (UniProtKB/Swiss-Prot),   Q2TAZ8 (UniProtKB/Swiss-Prot),   O75712 (UniProtKB/Swiss-Prot),   A0A654ICK0 (UniProtKB/TrEMBL),   A1YRJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000362460   ⟸   ENST00000373362
Ensembl Acc Id: ENSP00000362464   ⟸   ENST00000373366
Name Modeler Protein Id AA Range Protein Structure
AF-O75712-F1-model_v2 AlphaFold O75712 1-270 view protein structure

RGD ID:6854914
Promoter ID:EPDNEW_H622
Type:initiation region
Name:GJB3_1
Description:gap junction protein beta 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H623  EPDNEW_H624  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38134,781,214 - 34,781,274EPDNEW
RGD ID:6854916
Promoter ID:EPDNEW_H623
Type:initiation region
Name:GJB3_3
Description:gap junction protein beta 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H622  EPDNEW_H624  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38134,781,437 - 34,781,497EPDNEW
RGD ID:6854918
Promoter ID:EPDNEW_H624
Type:initiation region
Name:GJB3_2
Description:gap junction protein beta 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H622  EPDNEW_H623  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38134,782,376 - 34,782,436EPDNEW
RGD ID:6785642
Promoter ID:HG_KWN:1926
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:ENST00000373366,   OTTHUMT00000011558
Position:
Human AssemblyChrPosition (strand)Source
Build 36135,019,366 - 35,019,866 (+)MPROMDB
RGD ID:6785643
Promoter ID:HG_KWN:1927
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:UC001BXZ.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36135,021,716 - 35,022,216 (+)MPROMDB


1 to 36 of 36 rows
Database
Acc Id
Source(s)
COSMIC GJB3 COSMIC
Ensembl Genes ENSG00000188910 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000373362 ENTREZGENE
  ENST00000373362.3 UniProtKB/Swiss-Prot
  ENST00000373366 ENTREZGENE
  ENST00000373366.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1440.80 UniProtKB/Swiss-Prot
GTEx ENSG00000188910 GTEx
HGNC ID HGNC:4285 ENTREZGENE
Human Proteome Map GJB3 Human Proteome Map
InterPro Connexin UniProtKB/Swiss-Prot
  Connexin31 UniProtKB/Swiss-Prot
  Connexin_CCC UniProtKB/Swiss-Prot
  Connexin_CS UniProtKB/Swiss-Prot
  Connexin_N UniProtKB/Swiss-Prot
  Connexin_N_sf UniProtKB/Swiss-Prot
KEGG Report hsa:2707 UniProtKB/Swiss-Prot
NCBI Gene 2707 ENTREZGENE
OMIM 603324 OMIM
PANTHER PTHR11984 UniProtKB/Swiss-Prot
  PTHR11984:SF65 UniProtKB/Swiss-Prot
Pfam Connexin UniProtKB/Swiss-Prot
PharmGKB PA28696 PharmGKB
PRINTS CONNEXIN UniProtKB/Swiss-Prot
  CONNEXINB3 UniProtKB/Swiss-Prot
PROSITE CONNEXINS_1 UniProtKB/Swiss-Prot
  CONNEXINS_2 UniProtKB/Swiss-Prot
SMART CNX UniProtKB/Swiss-Prot
  Connexin_CCC UniProtKB/Swiss-Prot
UniProt A0A654ICK0 ENTREZGENE, UniProtKB/TrEMBL
  A1YRJ5 ENTREZGENE, UniProtKB/TrEMBL
  B2R790 ENTREZGENE
  CXB3_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q2TAZ8 ENTREZGENE
UniProt Secondary B2R790 UniProtKB/Swiss-Prot
  Q2TAZ8 UniProtKB/Swiss-Prot
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 GJB3  gap junction protein beta 3  EKV  erythrokeratodermia variabilis  Data merged from RGD:1345242 737654 PROVISIONAL
2015-11-17 GJB3  gap junction protein beta 3  GJB3  gap junction protein, beta 3, 31kDa  Symbol and/or name change 5135510 APPROVED