Foxred1 (FAD-dependent oxidoreductase domain containing 1) - Rat Genome Database

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Gene: Foxred1 (FAD-dependent oxidoreductase domain containing 1) Mus musculus
Analyze
Symbol: Foxred1
Name: FAD-dependent oxidoreductase domain containing 1
RGD ID: 1323419
MGI Page MGI
Description: Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Located in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 19. Orthologous to human FOXRED1 (FAD dependent oxidoreductase domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC024806; FAD-dependent oxidoreductase domain-containing protein 1; MGC38853; TEG-23; testis expressed gene 23; Tex23
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,115,504 - 35,122,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,115,502 - 35,122,351 (-)EnsemblGRCm39 Ensembl
GRCm38935,204,208 - 35,211,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,204,206 - 35,211,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv37935,011,793 - 35,018,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36934,953,879 - 34,960,596 (-)NCBIMGSCv36mm8
Celera932,440,923 - 32,447,642 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8703127   PMID:9464256   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:18614015   PMID:18799693   PMID:21677750   PMID:21873635   PMID:38355793  


Genomics

Comparative Map Data
Foxred1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,115,504 - 35,122,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,115,502 - 35,122,351 (-)EnsemblGRCm39 Ensembl
GRCm38935,204,208 - 35,211,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,204,206 - 35,211,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv37935,011,793 - 35,018,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36934,953,879 - 34,960,596 (-)NCBIMGSCv36mm8
Celera932,440,923 - 32,447,642 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.08NCBI
FOXRED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,269,154 - 126,278,126 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,269,024 - 126,278,131 (+)EnsemblGRCh38hg38GRCh38
GRCh3711126,139,049 - 126,148,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,644,265 - 125,653,237 (+)NCBINCBI36Build 36hg18NCBI36
Celera11123,304,079 - 123,313,220 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,081,327 - 122,093,091 (+)NCBIHuRef
CHM1_111126,025,226 - 126,034,303 (+)NCBICHM1_1
T2T-CHM13v2.011126,298,638 - 126,309,536 (+)NCBIT2T-CHM13v2.0
Foxred1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,789,557 - 41,818,064 (-)NCBIGRCr8
mRatBN7.2833,551,010 - 33,560,227 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,551,013 - 33,560,192 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0836,401,317 - 36,410,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,403,493 - 36,410,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,420,701 - 36,428,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,985,196 - 34,986,384 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1834,993,476 - 34,999,272 (-)NCBI
Celera834,970,544 - 34,979,821 (-)NCBICelera
Cytogenetic Map8q21NCBI
Foxred1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541227,293,467 - 27,300,522 (+)NCBIChiLan1.0ChiLan1.0
FOXRED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,952,673 - 126,965,031 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,060,337 - 128,072,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,083,245 - 121,096,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111124,993,363 - 125,005,798 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,993,070 - 125,005,798 (+)Ensemblpanpan1.1panPan2
FOXRED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,239,740 - 8,247,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,240,132 - 8,247,314 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,300,965 - 8,308,559 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,195,363 - 8,202,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,195,378 - 8,202,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,264,961 - 8,272,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,238,707 - 8,246,268 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,272,899 - 8,280,455 (-)NCBIUU_Cfam_GSD_1.0
Foxred1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,499,870 - 108,507,053 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,943,186 - 5,950,502 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,943,309 - 5,950,476 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXRED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,365,250 - 53,372,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,365,260 - 53,372,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,028,677 - 59,036,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXRED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,394,426 - 117,404,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,394,587 - 117,404,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,666,968 - 8,677,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxred1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812423,109 - 433,466 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624812423,000 - 429,660 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxred1
178 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2408
Count of miRNA genes:655
Interacting mature miRNAs:789
Transcripts:ENSMUST00000043805, ENSMUST00000127996, ENSMUST00000130072, ENSMUST00000135054, ENSMUST00000138692, ENSMUST00000139703, ENSMUST00000140177, ENSMUST00000142595, ENSMUST00000143039, ENSMUST00000151082, ENSMUST00000151658, ENSMUST00000154691
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
14700787Ncdq1_mnevus cell density QTL 1 (mouse)92811129636111296Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
1300868Tlf_mT lymphocyte fraction (mouse)Not determined93483774837306370Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93041469440565914Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
4142455Elnv_mepilepsy naive (mouse)Not determined93127155837306370Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse

Markers in Region
UniSTS:236630  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,211,258 - 35,212,432UniSTSGRCm38
MGSCv37935,018,843 - 35,020,017UniSTSGRCm37
Celera932,447,977 - 32,449,155UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map9A5.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X80423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X80424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043805   ⟹   ENSMUSP00000038924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,115,504 - 35,122,276 (-)Ensembl
GRCm38.p6 Ensembl935,204,208 - 35,210,980 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127996   ⟹   ENSMUSP00000118037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,115,504 - 35,122,351 (-)Ensembl
GRCm38.p6 Ensembl935,204,208 - 35,211,055 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,115,504 - 35,122,250 (-)Ensembl
GRCm38.p6 Ensembl935,204,208 - 35,210,954 (-)Ensembl
Ensembl Acc Id: ENSMUST00000135054   ⟹   ENSMUSP00000115301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,116,481 - 35,117,530 (-)Ensembl
GRCm38.p6 Ensembl935,205,185 - 35,206,234 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138692   ⟹   ENSMUSP00000120556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,118,844 - 35,122,193 (-)Ensembl
GRCm38.p6 Ensembl935,207,548 - 35,210,897 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139703   ⟹   ENSMUSP00000122535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,118,834 - 35,122,218 (-)Ensembl
GRCm38.p6 Ensembl935,207,538 - 35,210,922 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,116,162 - 35,117,218 (-)Ensembl
GRCm38.p6 Ensembl935,204,866 - 35,205,922 (-)Ensembl
Ensembl Acc Id: ENSMUST00000142595   ⟹   ENSMUSP00000117147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,117,519 - 35,122,292 (-)Ensembl
GRCm38.p6 Ensembl935,206,223 - 35,210,996 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,115,504 - 35,122,266 (-)Ensembl
GRCm38.p6 Ensembl935,204,208 - 35,210,970 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,117,383 - 35,122,242 (-)Ensembl
GRCm38.p6 Ensembl935,206,087 - 35,210,946 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151658   ⟹   ENSMUSP00000120284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,115,504 - 35,122,297 (-)Ensembl
GRCm38.p6 Ensembl935,204,208 - 35,211,001 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154691   ⟹   ENSMUSP00000123496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,115,502 - 35,122,232 (-)Ensembl
GRCm38.p6 Ensembl935,204,206 - 35,210,936 (-)Ensembl
Ensembl Acc Id: ENSMUST00000216618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl935,117,161 - 35,117,985 (-)Ensembl
GRCm38.p6 Ensembl935,205,865 - 35,206,689 (-)Ensembl
RefSeq Acc Id: NM_001291448   ⟹   NP_001278377
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
GRCm38935,204,208 - 35,211,055 (-)NCBI
Celera932,440,923 - 32,447,773 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291449   ⟹   NP_001278378
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
GRCm38935,204,208 - 35,211,055 (-)NCBI
Celera932,440,923 - 32,447,773 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359815   ⟹   NP_001346744
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
GRCm38935,204,208 - 35,211,055 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001421609   ⟹   NP_001408538
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
RefSeq Acc Id: NM_001421610   ⟹   NP_001408539
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
RefSeq Acc Id: NM_172291   ⟹   NP_758495
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
GRCm38935,204,208 - 35,211,055 (-)NCBI
MGSCv37935,011,793 - 35,018,510 (-)RGD
Celera932,440,923 - 32,447,773 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185317
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,499 (-)NCBI
RefSeq Acc Id: XM_006510223   ⟹   XP_006510286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510224   ⟹   XP_006510287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510226   ⟹   XP_006510289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,210,922 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242483   ⟹   XP_011240785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313309   ⟹   XP_017168798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244288   ⟹   XP_030100148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244289   ⟹   XP_030100149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244290   ⟹   XP_030100150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244291   ⟹   XP_030100151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154872   ⟹   XP_036010765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154873   ⟹   XP_036010766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154874   ⟹   XP_036010767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154875   ⟹   XP_036010768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154877   ⟹   XP_036010770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154879   ⟹   XP_036010772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947868
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935398
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935399
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,115,504 - 35,122,359 (-)NCBI
Sequence:
RefSeq Acc Id: XR_379113
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,117,293 - 35,122,359 (-)NCBI
GRCm38935,205,998 - 35,211,171 (-)NCBI
Sequence:
RefSeq Acc Id: XR_379114
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39935,116,885 - 35,122,359 (-)NCBI
GRCm38935,204,208 - 35,211,171 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001278377 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278378 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346744 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408538 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408539 (Get FASTA)   NCBI Sequence Viewer  
  NP_758495 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510286 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510287 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510289 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240785 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168798 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100148 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100149 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100150 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100151 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010765 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010766 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010767 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010768 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010770 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010772 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH24806 (Get FASTA)   NCBI Sequence Viewer  
  BAC35698 (Get FASTA)   NCBI Sequence Viewer  
  BAE26052 (Get FASTA)   NCBI Sequence Viewer  
  BAE37472 (Get FASTA)   NCBI Sequence Viewer  
  EDL25381 (Get FASTA)   NCBI Sequence Viewer  
  EDL25382 (Get FASTA)   NCBI Sequence Viewer  
  EDL25383 (Get FASTA)   NCBI Sequence Viewer  
  EDL25384 (Get FASTA)   NCBI Sequence Viewer  
  EDL25385 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000038924
  ENSMUSP00000038924.9
  ENSMUSP00000115301.2
  ENSMUSP00000117147.2
  ENSMUSP00000118037
  ENSMUSP00000118037.2
  ENSMUSP00000120284.2
  ENSMUSP00000120556.2
  ENSMUSP00000122535.2
  ENSMUSP00000123496.2
GenBank Protein Q3TQB2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_758495   ⟸   NM_172291
- Peptide Label: isoform 1
- UniProtKB: Q3TQB2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510286   ⟸   XM_006510223
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510289   ⟸   XM_006510226
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006510287   ⟸   XM_006510224
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001278377   ⟸   NM_001291448
- Peptide Label: isoform 2
- UniProtKB: Q8R1D0 (UniProtKB/Swiss-Prot),   Q3TQB2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278378   ⟸   NM_001291449
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: XP_011240785   ⟸   XM_011242483
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017168798   ⟸   XM_017313309
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030100150   ⟸   XM_030244290
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100148   ⟸   XM_030244288
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100151   ⟸   XM_030244291
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100149   ⟸   XM_030244289
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001346744   ⟸   NM_001359815
- Peptide Label: isoform 3
Ensembl Acc Id: ENSMUSP00000122535   ⟸   ENSMUST00000139703
Ensembl Acc Id: ENSMUSP00000120556   ⟸   ENSMUST00000138692
Ensembl Acc Id: ENSMUSP00000118037   ⟸   ENSMUST00000127996
Ensembl Acc Id: ENSMUSP00000120284   ⟸   ENSMUST00000151658
Ensembl Acc Id: ENSMUSP00000115301   ⟸   ENSMUST00000135054
Ensembl Acc Id: ENSMUSP00000123496   ⟸   ENSMUST00000154691
Ensembl Acc Id: ENSMUSP00000117147   ⟸   ENSMUST00000142595
Ensembl Acc Id: ENSMUSP00000038924   ⟸   ENSMUST00000043805
RefSeq Acc Id: XP_036010772   ⟸   XM_036154879
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036010766   ⟸   XM_036154873
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036010767   ⟸   XM_036154874
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036010768   ⟸   XM_036154875
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036010765   ⟸   XM_036154872
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036010770   ⟸   XM_036154877
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001408539   ⟸   NM_001421610
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001408538   ⟸   NM_001421609
- Peptide Label: isoform 3
Protein Domains
FAD dependent oxidoreductase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TQB2-F1-model_v2 AlphaFold Q3TQB2 1-487 view protein structure

Promoters
RGD ID:6844535
Promoter ID:MM_KWN:56782
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000086287,   OTTMUST00000086288
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36935,013,096 - 35,013,596 (-)MPROMDB
RGD ID:6844537
Promoter ID:MM_KWN:56783
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000078230,   OTTMUST00000078231,   OTTMUST00000086277,   OTTMUST00000086278,   OTTMUST00000086279,   OTTMUST00000086280,   OTTMUST00000086281,   OTTMUST00000086282,   OTTMUST00000086283,   OTTMUST00000086284,   OTTMUST00000086285,   OTTMUST00000086286
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36935,017,561 - 35,019,502 (-)MPROMDB
RGD ID:8669152
Promoter ID:EPDNEW_M12607
Type:initiation region
Name:Foxred1_1
Description:Mus musculus FAD-dependent oxidoreductase domain containing 1, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38935,210,946 - 35,211,006EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2446262 AgrOrtholog
Ensembl Genes ENSMUSG00000039048 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043805 ENTREZGENE
  ENSMUST00000043805.15 UniProtKB/Swiss-Prot
  ENSMUST00000127996 ENTREZGENE
  ENSMUST00000127996.8 UniProtKB/Swiss-Prot
  ENSMUST00000130072 ENTREZGENE
  ENSMUST00000135054.2 UniProtKB/TrEMBL
  ENSMUST00000138692.2 UniProtKB/TrEMBL
  ENSMUST00000139703.2 UniProtKB/TrEMBL
  ENSMUST00000142595.8 UniProtKB/TrEMBL
  ENSMUST00000143039 ENTREZGENE
  ENSMUST00000151658 ENTREZGENE
  ENSMUST00000151658.8 UniProtKB/TrEMBL
  ENSMUST00000154691.8 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  D-Amino Acid Oxidase, subunit A, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FAD-dep_OxRdtase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:235169 UniProtKB/Swiss-Prot
MGD MGI:2446262 ENTREZGENE
NCBI Gene 235169 ENTREZGENE
PANTHER FAD-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SARCOSINE DEHYDROGENASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DAO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxred1 PhenoGen
Superfamily-SCOP SSF51905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z5V7_MOUSE UniProtKB/TrEMBL
  D6RCV5_MOUSE UniProtKB/TrEMBL
  D6RG85_MOUSE UniProtKB/TrEMBL
  D6RJ42_MOUSE UniProtKB/TrEMBL
  F6UAF9_MOUSE UniProtKB/TrEMBL
  FXRD1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8C6M7_MOUSE UniProtKB/TrEMBL
  Q8R1D0 ENTREZGENE
UniProt Secondary Q8R1D0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Foxred1  FAD-dependent oxidoreductase domain containing 1  Tex23  testis expressed gene 23  Data merged from RGD:1609337 737654 PROVISIONAL