Foxred1 (FAD dependent oxidoreductase domain containing 1) - Rat Genome Database

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Gene: Foxred1 (FAD dependent oxidoreductase domain containing 1) Chinchilla lanigera
Analyze
Symbol: Foxred1
Name: FAD dependent oxidoreductase domain containing 1
RGD ID: 8715999
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2A (ortholog); chromosome 11 partial duplication syndrome (ortholog); Developmental Disabilities (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAD-dependent oxidoreductase domain containing 1; FAD-dependent oxidoreductase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541227,293,467 - 27,300,522 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Foxred1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541227,293,467 - 27,300,522 (+)NCBIChiLan1.0ChiLan1.0
FOXRED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,269,154 - 126,278,126 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,269,024 - 126,278,131 (+)EnsemblGRCh38hg38GRCh38
GRCh3711126,139,049 - 126,148,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,644,265 - 125,653,237 (+)NCBINCBI36Build 36hg18NCBI36
Celera11123,304,079 - 123,313,220 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,081,327 - 122,093,091 (+)NCBIHuRef
CHM1_111126,025,226 - 126,034,303 (+)NCBICHM1_1
T2T-CHM13v2.011126,298,638 - 126,309,536 (+)NCBIT2T-CHM13v2.0
Foxred1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,115,504 - 35,122,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,115,502 - 35,122,351 (-)EnsemblGRCm39 Ensembl
GRCm38935,204,208 - 35,211,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,204,206 - 35,211,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv37935,011,793 - 35,018,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36934,953,879 - 34,960,596 (-)NCBIMGSCv36mm8
Celera932,440,923 - 32,447,642 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.08NCBI
Foxred1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,789,557 - 41,818,064 (-)NCBIGRCr8
mRatBN7.2833,551,010 - 33,560,227 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,551,013 - 33,560,192 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0836,401,317 - 36,410,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,403,493 - 36,410,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,420,701 - 36,428,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,985,196 - 34,986,384 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1834,993,476 - 34,999,272 (-)NCBI
Celera834,970,544 - 34,979,821 (-)NCBICelera
Cytogenetic Map8q21NCBI
FOXRED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,952,673 - 126,965,031 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,060,337 - 128,072,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,083,245 - 121,096,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111124,993,363 - 125,005,798 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,993,070 - 125,005,798 (+)Ensemblpanpan1.1panPan2
FOXRED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,239,740 - 8,247,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,240,132 - 8,247,314 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,300,965 - 8,308,559 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,195,363 - 8,202,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,195,378 - 8,202,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,264,961 - 8,272,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,238,707 - 8,246,268 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,272,899 - 8,280,455 (-)NCBIUU_Cfam_GSD_1.0
Foxred1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,499,870 - 108,507,053 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,943,186 - 5,950,502 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,943,309 - 5,950,476 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXRED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,365,250 - 53,372,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,365,260 - 53,372,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,028,677 - 59,036,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXRED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,394,426 - 117,404,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,394,587 - 117,404,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,666,968 - 8,677,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxred1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812423,109 - 433,466 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624812423,000 - 429,660 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005378501   ⟹   XP_005378558
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,293,494 - 27,300,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511027   ⟹   XP_013366481
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,293,467 - 27,300,522 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378558 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366481 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005378558   ⟸   XM_005378501
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366481   ⟸   XM_013511027
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Foxred1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Foxred1  FAD dependent oxidoreductase domain containing 1    FAD-dependent oxidoreductase domain containing 1  Symbol and/or name change 5135510 APPROVED