FOXRED1 (FAD dependent oxidoreductase domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FOXRED1 (FAD dependent oxidoreductase domain containing 1) Chlorocebus sabaeus
Analyze
Symbol: FOXRED1
Name: FAD dependent oxidoreductase domain containing 1
RGD ID: 18392592
Description: ENCODES a protein that exhibits oxidoreductase activity (inferred); INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Developmental Disabilities (ortholog); Dwarfism (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAD-dependent oxidoreductase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,394,426 - 117,404,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,394,587 - 117,404,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,666,968 - 8,677,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FOXRED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,394,426 - 117,404,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,394,587 - 117,404,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,666,968 - 8,677,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FOXRED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,269,154 - 126,278,126 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,269,024 - 126,278,131 (+)EnsemblGRCh38hg38GRCh38
GRCh3711126,139,049 - 126,148,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,644,265 - 125,653,237 (+)NCBINCBI36Build 36hg18NCBI36
Celera11123,304,079 - 123,313,220 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,081,327 - 122,093,091 (+)NCBIHuRef
CHM1_111126,025,226 - 126,034,303 (+)NCBICHM1_1
T2T-CHM13v2.011126,298,638 - 126,309,536 (+)NCBIT2T-CHM13v2.0
Foxred1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,115,504 - 35,122,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,115,502 - 35,122,351 (-)EnsemblGRCm39 Ensembl
GRCm38935,204,208 - 35,211,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,204,206 - 35,211,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv37935,011,793 - 35,018,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36934,953,879 - 34,960,596 (-)NCBIMGSCv36mm8
Celera932,440,923 - 32,447,642 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.08NCBI
Foxred1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,789,557 - 41,818,064 (-)NCBIGRCr8
mRatBN7.2833,551,010 - 33,560,227 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,551,013 - 33,560,192 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0836,401,317 - 36,410,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,403,493 - 36,410,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,420,701 - 36,428,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,985,196 - 34,986,384 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1834,993,476 - 34,999,272 (-)NCBI
Celera834,970,544 - 34,979,821 (-)NCBICelera
Cytogenetic Map8q21NCBI
Foxred1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541227,293,467 - 27,300,522 (+)NCBIChiLan1.0ChiLan1.0
FOXRED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,952,673 - 126,965,031 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,060,337 - 128,072,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,083,245 - 121,096,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111124,993,363 - 125,005,798 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,993,070 - 125,005,798 (+)Ensemblpanpan1.1panPan2
FOXRED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,239,740 - 8,247,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,240,132 - 8,247,314 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,300,965 - 8,308,559 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,195,363 - 8,202,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,195,378 - 8,202,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,264,961 - 8,272,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,238,707 - 8,246,268 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,272,899 - 8,280,455 (-)NCBIUU_Cfam_GSD_1.0
Foxred1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,499,870 - 108,507,053 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,943,186 - 5,950,502 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,943,309 - 5,950,476 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXRED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,365,250 - 53,372,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,365,260 - 53,372,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,028,677 - 59,036,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Foxred1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812423,109 - 433,466 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624812423,000 - 429,660 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 1 60
Low 19
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000000280   ⟹   ENSCSAP00000015775
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1117,394,587 - 117,404,258 (+)Ensembl
RefSeq Acc Id: XM_038004856   ⟹   XP_037860784
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660438,666,968 - 8,677,791 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037860784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015775.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000015775   ⟸   ENSCSAT00000000280
RefSeq Acc Id: XP_037860784   ⟸   XM_038004856
- UniProtKB: A0A0D9S4I6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002267 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000280.1 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
  D-Amino Acid Oxidase, subunit A, domain 2 UniProtKB/TrEMBL
InterPro FAD-dep_OxRdtase UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
NCBI Gene FOXRED1 ENTREZGENE
PANTHER FAD-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SARCOSINE DEHYDROGENASE-RELATED UniProtKB/TrEMBL
Pfam DAO UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
UniProt A0A0D9S4I6 ENTREZGENE, UniProtKB/TrEMBL