DGCR2 (DiGeorge syndrome critical region gene 2) - Rat Genome Database

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Gene: DGCR2 (DiGeorge syndrome critical region gene 2) Homo sapiens
Analyze
Symbol: DGCR2
Name: DiGeorge syndrome critical region gene 2
RGD ID: 1321547
HGNC Page HGNC:2845
Description: Predicted to enable carbohydrate binding activity. Involved in cognition. Predicted to be active in membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DGS-C; DiGeorge syndrome critical region protein 2; DKFZp686I1730; IDD; integral membrane protein deleted in DiGeorge syndrome; integral membrane protein DGCR2/IDD; KIAA0163; LAN; SEZ-12
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,036,286 - 19,122,412 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,036,282 - 19,122,454 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,023,799 - 19,109,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,403,795 - 17,489,967 (-)NCBINCBI36Build 36hg18NCBI36
Build 342217,398,354 - 17,484,458NCBI
Celera222,875,821 - 2,961,991 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef222,645,051 - 2,731,450 (-)NCBIHuRef
CHM1_12219,023,413 - 19,109,549 (-)NCBICHM1_1
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 22 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2Humanautism spectrum disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868 and PMID:27569545
DGCR2Humanautistic disorder  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
DGCR2Humanchromosome 22q11.2 deletion syndrome, distal  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 22q11.2 deletion syndrome and distalClinVarPMID:31690835
DGCR2Humanchromosome 22q11.2 microduplication syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 22q11.2 microduplication syndromeClinVarPMID:31690835
DGCR2Humanchromosome 22q11.2 microduplication syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 22q11.2 microduplication syndromeClinVarPMID:25741868
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: DiGeorge syndromeClinVarPMID:21921585 more ...
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: DiGeorge syndromeClinVarPMID:24826987 more ...
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: DiGeorge syndromeClinVarPMID:28492532
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: DiGeorge syndromeClinVarPMID:31690835
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: 22q11.2 deletion syndromeClinVar 
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: DiGeorge syndromeClinVarPMID:32581362
DGCR2HumanDiGeorge syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: DiGeorge syndromeClinVarPMID:24826987 more ...
DGCR2Humanepilepsy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVar 
DGCR2Humanimmunodeficiency 51  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CANDIDIASIS more ...ClinVarPMID:24552284 more ...
DGCR2Humanintellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
DGCR2Humanmegacolon  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
DGCR2HumanNeurodevelopmental Disorders  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
DGCR2HumanPolyarteritis Nodosa, Childhood-Onset  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: VASCULITIS more ...ClinVarPMID:24552284 more ...
DGCR2Humanprimary immunodeficiency disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inherited Immunodeficiency DiseasesClinVarPMID:25741868
DGCR2Humanschizophrenia  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
1 to 20 of 22 rows
Object Symbol
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Evidence
With
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Source
Original Reference(s)
DGCR2HumanDiGeorge syndrome  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
DGCR2Humanschizophrenia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:21822266

1 to 20 of 47 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2Human1,1-dichloroethene decreases expressionISODgcr2 (Mus musculus)6480464vinylidene chloride results in decreased expression of DGCR2 mRNACTDPMID:26682919
DGCR2Human1,2-dimethylhydrazine multiple interactionsISODgcr2 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of DGCR2 mRNA]CTDPMID:22206623
DGCR2Human1,2-dimethylhydrazine increases expressionISODgcr2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of DGCR2 mRNACTDPMID:22206623
DGCR2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISODgcr2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of DGCR2 mRNACTDPMID:17949056
DGCR2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISODgcr2 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of DGCR2 mRNACTDPMID:33387578
DGCR2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISODgcr2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DGCR2 mRNACTDPMID:21570461
DGCR2Human2-methylcholine affects expressionEXP 6480464beta-methylcholine affects the expression of DGCR2 mRNACTDPMID:21179406
DGCR2Human3,4-methylenedioxymethamphetamine increases expressionISODgcr2 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of DGCR2 mRNACTDPMID:20188158
DGCR2Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of DGCR2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of DGCR2 mRNACTDPMID:28628672
DGCR2Human4,4'-diaminodiphenylmethane decreases expressionISODgcr2 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of DGCR2 mRNACTDPMID:18648102
DGCR2Human4,4'-sulfonyldiphenol decreases expressionISODgcr2 (Mus musculus)6480464bisphenol S results in decreased expression of DGCR2 mRNACTDPMID:39298647
DGCR2Human4,4'-sulfonyldiphenol affects methylationISODgcr2 (Mus musculus)6480464bisphenol S affects the methylation of DGCR2 geneCTDPMID:31683443
DGCR2Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of DGCR2 intronCTDPMID:30157460
DGCR2HumanAflatoxin B2 alpha decreases methylationEXP 6480464aflatoxin B2 results in decreased methylation of DGCR2 intronCTDPMID:30157460
DGCR2Humanatrazine decreases expressionEXP 6480464Atrazine results in decreased expression of DGCR2 mRNACTDPMID:22378314
DGCR2Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of DGCR2 promoterCTDPMID:27901495
DGCR2Humanbenzo[a]pyrene diol epoxide I decreases expressionEXP 64804647 more ...CTDPMID:19150397
DGCR2Humanbenzo[e]pyrene decreases methylationEXP 6480464benzo(e)pyrene results in decreased methylation of DGCR2 intronCTDPMID:30157460
DGCR2Humanbis(2-ethylhexyl) phthalate increases expressionISODgcr2 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of DGCR2 mRNACTDPMID:33754040
DGCR2Humanbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of DGCR2 mRNACTDPMID:20170705

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2Humananimal organ morphogenesis involved_inTAS 150520179 PMID:7655455PINCPMID:7655455
DGCR2Humancell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
DGCR2Humancognition involved_inIMP 150520179 PMID:23227193UniProtPMID:23227193
DGCR2Humanresponse to xenobiotic stimulus acts_upstream_of_or_withinISODgcr2 (Mus musculus)9068941 PMID:8630060MGIPMID:8630060

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
DGCR2Humanmembrane is_active_inIBAMGI:892866 and PANTHER:PTN000391897150520179 GO_CentralGO_REF:0000033
DGCR2Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2Humancarbohydrate binding enablesIEAUniProtKB-KW:KW-0430150520179 UniProtGO_REF:0000043
DGCR2Humanprotein binding enablesIPIUniProtKB:Q8N1I0150520179 PMID:33961781 and PMID:34819669IntActPMID:33961781 and PMID:34819669

1 to 20 of 39 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2HumanAbnormality of the ear  IAGP 8699517 HPOMIM:192430
DGCR2HumanAbnormality of the hand  IAGP 8699517 HPOMIM:192430
DGCR2HumanAggressive behavior  IAGP 8699517 HPOMIM:192430
DGCR2HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:192430
DGCR2HumanBlepharophimosis  IAGP 8699517 HPOMIM:192430
DGCR2HumanBulbous nose  IAGP 8699517 HPOMIM:192430
DGCR2HumanCleft palate  IAGP 8699517 HPOMIM:192430
DGCR2HumanCryptorchidism  IAGP 8699517 HPOMIM:192430
DGCR2HumanDouble aortic arch  IAGP 8699517 HPOMIM:192430
DGCR2HumanEmotional lability  IAGP 8699517 HPOMIM:192430
DGCR2HumanHypernasal speech  IAGP 8699517 HPOMIM:192430
DGCR2HumanHypocalcemia  IAGP 8699517 HPOMIM:192430
DGCR2HumanHypoparathyroidism  IAGP 8699517 HPOMIM:192430
DGCR2HumanHypotonia  IAGP 8699517 HPOMIM:192430
DGCR2HumanImpaired T cell function  IAGP 8699517 HPOMIM:192430
DGCR2HumanInguinal hernia  IAGP 8699517 HPOMIM:192430
DGCR2HumanIntellectual disability  IAGP 8699517 HPOMIM:192430
DGCR2HumanInterrupted aortic arch  IAGP 8699517 HPOMIM:192430
DGCR2HumanMicrocephaly  IAGP 8699517 HPOMIM:192430
DGCR2HumanNarrow palpebral fissure  IAGP 8699517 HPOMIM:192430
1 to 20 of 39 rows
1 to 15 of 15 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DGCR2HumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
DGCR2HumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
DGCR2HumanAutistic behavior  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868 and PMID:27569545
DGCR2HumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
DGCR2HumanMegacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
DGCR2HumanMegacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
DGCR2HumanSeizure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVar 
1 to 15 of 15 rows

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:3770751   PMID:7633403   PMID:7655455   PMID:8630060   PMID:8724849   PMID:8776594   PMID:12477932   PMID:15231747   PMID:15231748   PMID:15461802   PMID:15489334   PMID:16344560  
PMID:16783572   PMID:17081983   PMID:18797402   PMID:19668116   PMID:19906316   PMID:20301696   PMID:21822266   PMID:21873635   PMID:21988832   PMID:22465717   PMID:23227193   PMID:26186194  
PMID:28514442   PMID:29449217   PMID:30901624   PMID:31048545   PMID:31980649   PMID:32807901   PMID:33957083   PMID:33961781   PMID:34819669   PMID:35271311   PMID:35337019   PMID:35696571  
PMID:35748872   PMID:38569033  



DGCR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,036,286 - 19,122,412 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,036,282 - 19,122,454 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,023,799 - 19,109,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,403,795 - 17,489,967 (-)NCBINCBI36Build 36hg18NCBI36
Build 342217,398,354 - 17,484,458NCBI
Celera222,875,821 - 2,961,991 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef222,645,051 - 2,731,450 (-)NCBIHuRef
CHM1_12219,023,413 - 19,109,549 (-)NCBICHM1_1
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBIT2T-CHM13v2.0
Dgcr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,658,219 - 17,709,592 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,657,346 - 17,716,426 (-)EnsemblGRCm39 Ensembl
GRCm381617,840,355 - 17,891,728 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,839,482 - 17,898,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,840,448 - 17,891,821 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,753,918 - 17,805,232 (-)NCBIMGSCv36mm8
Celera1618,413,424 - 18,464,793 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.05NCBI
Dgcr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,598,247 - 96,648,791 (+)NCBIGRCr8
mRatBN7.21183,093,961 - 83,144,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,094,037 - 83,144,502 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,822,577 - 91,870,954 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,483,711 - 84,532,093 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,537,326 - 83,585,709 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,242,441 - 87,290,806 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,242,522 - 87,292,955 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,334,004 - 90,368,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01190,819,541 - 90,827,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,082,094 - 85,130,476 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,122,690 - 85,171,073 (+)NCBI
Celera1181,869,972 - 81,918,326 (+)NCBICelera
Cytogenetic Map11q23NCBI
Dgcr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,857,222 - 18,938,680 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,857,222 - 18,938,552 (+)NCBIChiLan1.0ChiLan1.0
DGCR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22328,656,421 - 28,742,760 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,204,009 - 31,290,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0221,790,899 - 1,876,983 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,468,780 - 17,554,161 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,471,360 - 17,554,161 (-)Ensemblpanpan1.1panPan2
DGCR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,051,598 - 30,143,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,054,116 - 30,141,533 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,005,593 - 30,103,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,452,807 - 31,551,179 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,452,761 - 31,551,176 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,500,963 - 29,598,417 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,125,403 - 29,222,785 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,213,547 - 30,311,954 (+)NCBIUU_Cfam_GSD_1.0
Dgcr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,633,631 - 139,720,750 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,033,275 - 3,121,093 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,033,312 - 3,120,473 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DGCR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,877,872 - 50,935,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,881,260 - 50,935,603 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,387,656 - 54,443,785 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DGCR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,628,092 - 6,710,070 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,628,096 - 6,707,507 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666085222,645 - 304,500 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dgcr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945204,133 - 297,341 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945204,374 - 295,551 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in DGCR2
73 total Variants

1 to 10 of 554 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh37/hg19 22q11.21(chr22:18915347-21463730)x1 copy number loss VATER association [RCV000520380] Chr22:18915347..21463730 [GRCh37]
Chr22:22q11.21		 likely pathogenic
NC_000022.10:g.(?_18910310)_(19770565_?)del deletion DiGeorge syndrome [RCV000630488] Chr22:18910310..19770565 [GRCh37]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21207225)x3 copy number gain See cases [RCV000050271] Chr22:18339130..21207225 [GRCh38]
Chr22:18919942..21561514 [GRCh37]
Chr22:17299942..19891514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21207225)x1 copy number loss See cases [RCV000050273] Chr22:18339130..21207225 [GRCh38]
Chr22:18919942..21561514 [GRCh37]
Chr22:17299942..19891514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-20671425)x1 copy number loss See cases [RCV000050290] Chr22:18339130..20671425 [GRCh38]
Chr22:18706001..21025713 [GRCh37]
Chr22:17086001..19355713 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21086225)x3 copy number gain See cases [RCV000050991] Chr22:18339130..21086225 [GRCh38]
Chr22:18919942..21440514 [GRCh37]
Chr22:17299942..19770514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21086225)x1 copy number loss See cases [RCV000050992] Chr22:18339130..21086225 [GRCh38]
Chr22:18919942..21440514 [GRCh37]
Chr22:17299942..19770514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.1-11.21(chr22:16916608-20324240)x3 copy number gain See cases [RCV000050858] Chr22:16916608..20324240 [GRCh38]
Chr22:17397498..20311763 [GRCh37]
Chr22:15777498..18691763 [NCBI36]
Chr22:22q11.1-11.21		 pathogenic
GRCh38/hg38 22q11.1-11.21(chr22:16916608-20324240)x1 copy number loss See cases [RCV000050859] Chr22:16916608..20324240 [GRCh38]
Chr22:17397498..20311763 [GRCh37]
Chr22:15777498..18691763 [NCBI36]
Chr22:22q11.1-11.21		 pathogenic
GRCh38/hg38 22q11.21-12.3(chr22:18178957-31821193)x3 copy number gain See cases [RCV000050768] Chr22:18178957..31821193 [GRCh38]
Chr22:18661724..32217179 [GRCh37]
Chr22:17041724..30547179 [NCBI36]
Chr22:22q11.21-12.3		 pathogenic
1 to 10 of 554 rows

Predicted Target Of
Summary Value
Count of predictions:8428
Count of miRNA genes:1125
Interacting mature miRNAs:1370
Transcripts:ENST00000263196, ENST00000389262, ENST00000467659, ENST00000473832, ENST00000537045, ENST00000545799, ENST00000608548
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597185720GWAS1281794_Hcigarettes per day measurement QTL GWAS1281794 (human)5e-09cigarettes per day measurement221911403819114039Human
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human
597277920GWAS1373994_Hproline measurement QTL GWAS1373994 (human)3e-16proline measurementblood amino acid measurement (CMO:0003730)221908262719082628Human
407051817GWAS700793_Hproline measurement QTL GWAS700793 (human)0.000001proline measurementblood amino acid measurement (CMO:0003730)221908953619089537Human
597106572GWAS1202646_Hhippocampus volume change measurement, age at assessment QTL GWAS1202646 (human)0.000005hippocampus volume change measurement, age at assessment221911203919112040Human

SHGC-35943  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,033,787 - 19,033,894UniSTSGRCh37
Build 362217,413,787 - 17,413,894RGDNCBI36
Celera222,885,813 - 2,885,920RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,655,043 - 2,655,150UniSTS
Stanford-G3 RH Map22106.0UniSTS
NCBI RH Map2227.6UniSTS
GeneMap99-G3 RH Map22106.0UniSTS
G19956  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,025,106 - 19,025,220UniSTSGRCh37
Build 362217,405,106 - 17,405,220RGDNCBI36
Celera222,877,132 - 2,877,246RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,646,362 - 2,646,476UniSTS
A002D20  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,025,106 - 19,025,220UniSTSGRCh37
Build 362217,405,106 - 17,405,220RGDNCBI36
Celera222,877,132 - 2,877,246RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,646,362 - 2,646,476UniSTS
GeneMap99-GB4 RH Map2216.86UniSTS
RH78708  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,034,031 - 19,034,160UniSTSGRCh37
Build 362217,414,031 - 17,414,160RGDNCBI36
Celera222,886,057 - 2,886,186RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,655,287 - 2,655,416UniSTS
GeneMap99-GB4 RH Map2216.86UniSTS
RH25381  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,023,932 - 19,024,136UniSTSGRCh37
Build 362217,403,932 - 17,404,136RGDNCBI36
Celera222,875,958 - 2,876,162RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,645,188 - 2,645,392UniSTS
D22S947  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,092,904 - 19,093,098UniSTSGRCh37
Build 362217,472,904 - 17,473,098RGDNCBI36
Celera222,944,930 - 2,945,124RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,714,389 - 2,714,583UniSTS
D22S1117  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,025,010 - 19,025,233UniSTSGRCh37
Build 362217,405,010 - 17,405,233RGDNCBI36
Celera222,877,036 - 2,877,259RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,646,266 - 2,646,489UniSTS
SHGC-132562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,033,884 - 19,034,186UniSTSGRCh37
Build 362217,413,884 - 17,414,186RGDNCBI36
Celera222,885,910 - 2,886,212RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,655,140 - 2,655,442UniSTS
TNG Radiation Hybrid Map22878.0UniSTS
G19640  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,023,843 - 19,023,943UniSTSGRCh37
Build 362217,403,843 - 17,403,943RGDNCBI36
Celera222,875,869 - 2,875,969RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,645,099 - 2,645,199UniSTS
A001T42  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,023,843 - 19,023,943UniSTSGRCh37
Build 362217,403,843 - 17,403,943RGDNCBI36
Celera222,875,869 - 2,875,969RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,645,099 - 2,645,199UniSTS
GeneMap99-GB4 RH Map2216.86UniSTS
D22S1569  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,096,585 - 19,096,747UniSTSGRCh37
Build 362217,476,585 - 17,476,747RGDNCBI36
Celera222,948,609 - 2,948,771RGD
HuRef222,718,068 - 2,718,230UniSTS
D22S1573  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,025,621 - 19,026,252UniSTSGRCh37
Build 362217,405,621 - 17,406,252RGDNCBI36
Celera222,877,647 - 2,878,278RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,646,877 - 2,647,508UniSTS
D22S1611  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,023,971 - 19,024,152UniSTSGRCh37
Build 362217,403,971 - 17,404,152RGDNCBI36
Celera222,875,997 - 2,876,178RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,645,227 - 2,645,408UniSTS
D22S1635  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,075,879 - 19,076,035UniSTSGRCh37
Build 362217,455,879 - 17,456,035RGDNCBI36
Celera222,927,905 - 2,928,061RGD
HuRef222,697,362 - 2,697,518UniSTS
D22S1600  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,104,906 - 19,105,020UniSTSGRCh37
Build 362217,484,906 - 17,485,020RGDNCBI36
Celera222,956,930 - 2,957,044RGD
HuRef222,726,389 - 2,726,503UniSTS
D22S1650  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,051,424 - 19,051,584UniSTSGRCh37
Build 362217,431,424 - 17,431,584RGDNCBI36
Celera222,903,450 - 2,903,610RGD
HuRef222,672,683 - 2,672,843UniSTS
D22S1653  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,067,949 - 19,068,058UniSTSGRCh37
Build 362217,447,949 - 17,448,058RGDNCBI36
Celera222,919,975 - 2,920,084RGD
HuRef222,689,208 - 2,689,317UniSTS
D22S1626  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,046,536 - 19,046,715UniSTSGRCh37
Build 362217,426,536 - 17,426,715RGDNCBI36
Celera222,898,562 - 2,898,741RGD
HuRef222,667,794 - 2,667,973UniSTS
SGC31562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,026,140 - 19,026,346UniSTSGRCh37
Build 362217,406,140 - 17,406,346RGDNCBI36
Celera222,878,166 - 2,878,372RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,647,396 - 2,647,602UniSTS
GeneMap99-GB4 RH Map2216.86UniSTS
Whitehead-RH Map2218.7UniSTS
STS-L46584  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,027,770 - 19,027,924UniSTSGRCh37
Build 362217,407,770 - 17,407,924RGDNCBI36
Celera222,879,796 - 2,879,950RGD
Cytogenetic Map22q11.21UniSTS
HuRef222,649,026 - 2,649,180UniSTS
GeneMap99-GB4 RH Map2217.38UniSTS
NCBI RH Map2212.4UniSTS
DGCR2__4701  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,023,776 - 19,024,256UniSTSGRCh37
Build 362217,403,776 - 17,404,256RGDNCBI36
Celera222,875,802 - 2,876,282RGD
HuRef222,645,032 - 2,645,512UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 30 of 39 rows
RefSeq Transcripts NG_021333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001173533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001173534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001184781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001755405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001755406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC000095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW502246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D79985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA494775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ032369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC877930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 39 rows

Ensembl Acc Id: ENST00000263196   ⟹   ENSP00000263196
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,036,286 - 19,122,412 (-)Ensembl
Ensembl Acc Id: ENST00000389262   ⟹   ENSP00000373914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,036,286 - 19,122,407 (-)Ensembl
Ensembl Acc Id: ENST00000467659
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,037,837 - 19,057,053 (-)Ensembl
Ensembl Acc Id: ENST00000473832
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,056,994 - 19,065,904 (-)Ensembl
Ensembl Acc Id: ENST00000537045   ⟹   ENSP00000440062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,036,282 - 19,122,454 (-)Ensembl
Ensembl Acc Id: ENST00000545799   ⟹   ENSP00000445069
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,036,282 - 19,122,454 (-)Ensembl
Ensembl Acc Id: ENST00000608548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2219,048,379 - 19,063,277 (-)Ensembl
RefSeq Acc Id: NM_001173533   ⟹   NP_001167004
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382219,036,286 - 19,122,412 (-)NCBI
GRCh372219,023,795 - 19,109,967 (-)ENTREZGENE
HuRef222,645,051 - 2,731,450 (-)ENTREZGENE
CHM1_12219,023,413 - 19,109,549 (-)NCBI
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001173534   ⟹   NP_001167005
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382219,036,286 - 19,122,412 (-)NCBI
GRCh372219,023,795 - 19,109,967 (-)ENTREZGENE
HuRef222,645,051 - 2,731,450 (-)ENTREZGENE
CHM1_12219,023,413 - 19,109,549 (-)NCBI
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001184781   ⟹   NP_001171710
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382219,036,286 - 19,122,412 (-)NCBI
GRCh372219,023,795 - 19,109,967 (-)ENTREZGENE
HuRef222,645,051 - 2,731,450 (-)ENTREZGENE
CHM1_12219,023,413 - 19,109,549 (-)NCBI
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005137   ⟹   NP_005128
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382219,036,286 - 19,122,412 (-)NCBI
GRCh372219,023,795 - 19,109,967 (-)ENTREZGENE
Build 362217,403,795 - 17,489,967 (-)NCBI Archive
HuRef222,645,051 - 2,731,450 (-)ENTREZGENE
CHM1_12219,023,413 - 19,109,549 (-)NCBI
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBI
Sequence:
RefSeq Acc Id: NR_033674
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382219,036,286 - 19,122,412 (-)NCBI
GRCh372219,023,795 - 19,109,967 (-)ENTREZGENE
HuRef222,645,051 - 2,731,450 (-)ENTREZGENE
CHM1_12219,023,413 - 19,109,549 (-)NCBI
T2T-CHM13v2.02219,411,609 - 19,497,031 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001167005   ⟸   NM_001173534
- Peptide Label: isoform 3 precursor
- UniProtKB: B7Z3T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001167004   ⟸   NM_001173533
- Peptide Label: isoform 2 precursor
- UniProtKB: B7Z3T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171710   ⟸   NM_001184781
- Peptide Label: isoform 4 precursor
- UniProtKB: Q8IWC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_005128   ⟸   NM_005137
- Peptide Label: isoform 1 precursor
- UniProtKB: B5TY34 (UniProtKB/Swiss-Prot),   A8K6K5 (UniProtKB/Swiss-Prot),   A6NIB5 (UniProtKB/Swiss-Prot),   B7Z935 (UniProtKB/Swiss-Prot),   P98153 (UniProtKB/Swiss-Prot),   Q8IWC8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000445069   ⟸   ENST00000545799
C-type lectin   LDL-receptor class A   VWFC

Name Modeler Protein Id AA Range Protein Structure
AF-P98153-F1-model_v2 AlphaFold P98153 1-550 view protein structure

RGD ID:6799821
Promoter ID:HG_KWN:41508
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:NR_024157,   OTTHUMT00000316508
Position:
Human AssemblyChrPosition (strand)Source
Build 362217,413,976 - 17,414,476 (-)MPROMDB
RGD ID:6799812
Promoter ID:HG_KWN:41509
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:OTTHUMT00000316506
Position:
Human AssemblyChrPosition (strand)Source
Build 362217,424,076 - 17,424,576 (-)MPROMDB
RGD ID:6799811
Promoter ID:HG_KWN:41512
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001173533,   NM_001173534,   NM_001184781,   NM_005137,   NR_033674,   UC002ZOR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362217,489,621 - 17,490,121 (-)MPROMDB
RGD ID:6850686
Promoter ID:EP73137
Type:initiation region
Name:HS_DGCR2
Description:DiGeorge syndrome critical region gene 2.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 362217,489,925 - 17,489,985EPD
RGD ID:13603160
Promoter ID:EPDNEW_H27764
Type:initiation region
Name:DGCR2_1
Description:DiGeorge syndrome critical region gene 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382219,122,412 - 19,122,472EPDNEW


1 to 40 of 51 rows
Database
Acc Id
Source(s)
COSMIC DGCR2 COSMIC
Ensembl Genes ENSG00000070413 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000263196 ENTREZGENE
  ENST00000263196.12 UniProtKB/Swiss-Prot
  ENST00000389262 ENTREZGENE
  ENST00000537045 ENTREZGENE
  ENST00000537045.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
  4.10.400.10 UniProtKB/Swiss-Prot
GTEx ENSG00000070413 GTEx
HGNC ID HGNC:2845 ENTREZGENE
Human Proteome Map DGCR2 Human Proteome Map
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  CTDL_fold UniProtKB/Swiss-Prot
  DGCR2-like_CTLD UniProtKB/Swiss-Prot
  IDD UniProtKB/Swiss-Prot
  LDL_receptor-like_sf UniProtKB/Swiss-Prot
  LDLR_class-A_CS UniProtKB/Swiss-Prot
  LDrepeatLR_classA_rpt UniProtKB/Swiss-Prot
  VWF_dom UniProtKB/Swiss-Prot
KEGG Report hsa:9993 UniProtKB/Swiss-Prot
NCBI Gene 9993 ENTREZGENE
OMIM 600594 OMIM
PANTHER INTEGRAL MEMBRANE PROTEIN DGCR2/IDD UniProtKB/Swiss-Prot
  PTHR15256 UniProtKB/Swiss-Prot
Pfam Ldl_recept_a UniProtKB/Swiss-Prot
  Lectin_C UniProtKB/Swiss-Prot
PharmGKB PA27307 PharmGKB
PROSITE C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
  LDLRA_1 UniProtKB/Swiss-Prot
  LDLRA_2 UniProtKB/Swiss-Prot
  VWFC_1 UniProtKB/Swiss-Prot
SMART CLECT UniProtKB/Swiss-Prot
  LDLa UniProtKB/Swiss-Prot
  VWC UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot
  SSF57424 UniProtKB/Swiss-Prot
UniProt A6NIB5 ENTREZGENE
  A8K6K5 ENTREZGENE
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