Dgcr2-ps1 (DiGeorge syndrome critical region gene 2, pseudogene 1) - Rat Genome Database

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Gene: Dgcr2-ps1 (DiGeorge syndrome critical region gene 2, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Dgcr2-ps1
Name: DiGeorge syndrome critical region gene 2, pseudogene 1
RGD ID: 7695168
Description: Predicted to be located in membrane.
Type: pseudo
RefSeq Status: INFERRED
Previously known as: integral membrane protein DGCR2/IDD-like; LOC102557049
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Dgcr2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86138,456,121 - 138,457,555 (-)NCBIGRCr8
mRatBN7.26132,635,087 - 132,636,521 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx6132,799,552 - 132,800,988 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
Rnor_6.01187,273,949 - 87,290,804 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera6130,149,264 - 130,150,698 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Variants

.
Variants in Dgcr2-ps1
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat


Expression


Sequence


Protein Sequences
Ensembl Protein ENSRNOP00000082372.1
Protein Domains
C-type lectin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35742 BioCyc
Ensembl Genes ENSRNOG00000063188 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000118494.1 UniProtKB/TrEMBL
Gene3D-CATH Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  DGCR2-like_CTLD UniProtKB/TrEMBL
  IDD UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
NCBI Gene LOC102557049 ENTREZGENE
PANTHER INTEGRAL MEMBRANE PROTEIN DGCR2/IDD UniProtKB/TrEMBL
  INTEGRAL MEMBRANE PROTEIN DGCR2/IDD UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Dgcr2-ps1 PhenoGen
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  VWFC_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000063188 RatGTEx
SMART CLECT UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
UniProt A0A8I5ZU09_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Dgcr2-ps1  DiGeorge syndrome critical region gene 2, pseudogene 1  LOC102557049  integral membrane protein DGCR2/IDD-like  Symbol and Name Changed 1299863 APPROVED
2013-12-18 LOC102557049  integral membrane protein DGCR2/IDD-like      Symbol and Name status set to provisional 70820 PROVISIONAL