Lpcat3 (lysophosphatidylcholine acyltransferase 3) - Rat Genome Database

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Gene: Lpcat3 (lysophosphatidylcholine acyltransferase 3) Mus musculus
Analyze
Symbol: Lpcat3
Name: lysophosphatidylcholine acyltransferase 3
RGD ID: 1321001
MGI Page MGI
Description: Enables 1-acylglycerophosphocholine O-acyltransferase activity; 1-acylglycerophosphoethanolamine O-acyltransferase activity; and 1-acylglycerophosphoserine O-acyltransferase activity. Involved in several processes, including glycerophospholipid metabolic process; intestinal stem cell homeostasis; and plasma lipoprotein particle assembly. Acts upstream of or within regulation of plasma lipoprotein particle levels. Located in endoplasmic reticulum membrane. Is expressed in several structures, including adrenal gland; alimentary system; central nervous system; hemolymphoid system; and liver. Orthologous to human LPCAT3 (lysophosphatidylcholine acyltransferase 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-acylglycerophosphoserine O-acyltransferase; C3f; Grcc3; Grcc3f; LPC acyltransferase 3; Lpcat; Lpeat; Lplat5; Lpsat; lyso-PC acyltransferase 3; lyso-PE acyltransferase; lyso-PS acyltransferase; lysophosphatidylethanolamine acyltransferase; lysophosphatidylserine acyltransferase; lysophospholipid acyltransferase 5; Mboa; Mboat5; Moact5; O-acyltransferase domain-containing protein 5; Oac; Oact5; PTG
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,639,887 - 124,681,142 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,639,990 - 124,681,381 (+)EnsemblGRCm39 Ensembl
GRCm386124,663,094 - 124,704,716 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,663,027 - 124,704,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv376124,613,122 - 124,654,734 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,628,747 - 124,669,798 (+)NCBIMGSCv36mm8
Celera6126,344,780 - 126,386,441 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
aflatoxin B1  (ISO)
amiodarone  (EXP)
antirheumatic drug  (ISO)
apigenin  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
ciglitazone  (ISO)
ciguatoxin CTX1B  (EXP)
ciprofibrate  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
endosulfan  (ISO)
ethanol  (EXP)
fenofibrate  (ISO)
ferrostatin-1  (EXP)
fluoranthene  (EXP)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
inulin  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lithocholic acid  (EXP)
Mesaconitine  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Muraglitazar  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (EXP)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
selenomethionine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (EXP,ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9445485   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:14691545   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18287005   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22511767   PMID:23208369   PMID:23332760  
PMID:23580142   PMID:24206663   PMID:25806685   PMID:25898003   PMID:26226572   PMID:26828064   PMID:26833026   PMID:27113764   PMID:27913621   PMID:28167773   PMID:28378742   PMID:28683445  
PMID:28846071   PMID:29395055   PMID:29673706   PMID:29866392   PMID:30160786   PMID:30550785   PMID:30590048   PMID:30705887   PMID:31356236   PMID:32364701   PMID:32780898   PMID:33518513  
PMID:33591957   PMID:36114006   PMID:37823674   PMID:38073444   PMID:38355793   PMID:38519981  


Genomics

Comparative Map Data
Lpcat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,639,887 - 124,681,142 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,639,990 - 124,681,381 (+)EnsemblGRCm39 Ensembl
GRCm386124,663,094 - 124,704,716 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,663,027 - 124,704,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv376124,613,122 - 124,654,734 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,628,747 - 124,669,798 (+)NCBIMGSCv36mm8
Celera6126,344,780 - 126,386,441 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
LPCAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,976,185 - 7,018,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,976,185 - 7,018,477 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,085,347 - 7,125,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,955,608 - 6,996,103 (-)NCBINCBI36Build 36hg18NCBI36
Celera128,706,367 - 8,748,731 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,943,813 - 6,986,151 (-)NCBIHuRef
CHM1_1127,084,301 - 7,124,856 (-)NCBICHM1_1
T2T-CHM13v2.0126,989,663 - 7,031,946 (-)NCBIT2T-CHM13v2.0
Lpcat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,154,690 - 159,196,176 (+)NCBIGRCr8
mRatBN7.24157,468,397 - 157,509,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,468,290 - 157,509,880 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,691,494 - 163,738,379 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,474,396 - 159,521,285 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,121,481 - 158,162,851 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,181,722 - 157,222,997 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,181,795 - 157,222,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,199,925 - 224,240,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,786,349 - 160,827,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,031,284 - 161,072,491 (+)NCBI
Celera4146,207,013 - 146,248,552 (+)NCBICelera
Cytogenetic Map4q42NCBI
Lpcat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,571,028 - 4,605,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,571,028 - 4,605,097 (-)NCBIChiLan1.0ChiLan1.0
LPCAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,542,261 - 12,583,945 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,539,020 - 12,580,609 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,107,925 - 7,149,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,024,015 - 7,065,945 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,024,015 - 7,065,945 (-)Ensemblpanpan1.1panPan2
LPCAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,028,438 - 38,068,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,028,120 - 38,068,502 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,547,836 - 8,588,333 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,380,888 - 38,421,451 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,380,568 - 38,424,143 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,255,853 - 38,296,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,296,886 - 38,337,321 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,026,597 - 8,067,116 (-)NCBIUU_Cfam_GSD_1.0
Lpcat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,132,454 - 102,185,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709799,961 - 851,585 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709800,197 - 852,659 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPCAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,708,020 - 63,746,103 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,707,674 - 63,746,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,143,944 - 66,182,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LPCAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,009,911 - 7,051,391 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,005,701 - 7,051,605 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,165,941 - 1,207,838 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpcat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,611,300 - 3,642,686 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,611,300 - 3,642,682 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lpcat3
2194 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1959
Count of miRNA genes:656
Interacting mature miRNAs:829
Transcripts:ENSMUST00000004381, ENSMUST00000128721, ENSMUST00000130020, ENSMUST00000133797, ENSMUST00000135516, ENSMUST00000141069, ENSMUST00000141546, ENSMUST00000150597, ENSMUST00000152176
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
RH125006  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386124,668,717 - 124,668,940UniSTSGRCm38
MGSCv376124,618,735 - 124,618,958UniSTSGRCm37
Celera6126,350,448 - 126,350,671UniSTS
Cytogenetic Map6F2UniSTS
cM Map660.23UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB294194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC002397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY028317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB666850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN705185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000004381   ⟹   ENSMUSP00000004381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,639,990 - 124,681,381 (+)Ensembl
GRCm38.p6 Ensembl6124,663,027 - 124,704,418 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128721   ⟹   ENSMUSP00000144738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,640,135 - 124,679,253 (+)Ensembl
GRCm38.p6 Ensembl6124,663,172 - 124,702,290 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,679,718 - 124,680,891 (+)Ensembl
GRCm38.p6 Ensembl6124,702,755 - 124,703,928 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,640,178 - 124,677,523 (+)Ensembl
GRCm38.p6 Ensembl6124,663,215 - 124,700,560 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,639,990 - 124,681,333 (+)Ensembl
GRCm38.p6 Ensembl6124,663,027 - 124,704,370 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,640,144 - 124,676,464 (+)Ensembl
GRCm38.p6 Ensembl6124,663,181 - 124,699,501 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,678,382 - 124,679,576 (+)Ensembl
GRCm38.p6 Ensembl6124,701,419 - 124,702,613 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,679,968 - 124,680,980 (+)Ensembl
GRCm38.p6 Ensembl6124,703,005 - 124,704,017 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6124,679,220 - 124,680,021 (+)Ensembl
GRCm38.p6 Ensembl6124,702,257 - 124,703,058 (+)Ensembl
RefSeq Acc Id: NM_145130   ⟹   NP_660112
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,640,091 - 124,681,133 (+)NCBI
GRCm386124,663,104 - 124,704,716 (+)NCBI
MGSCv376124,613,122 - 124,654,734 (+)RGD
Celera6126,344,780 - 126,386,441 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149320
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,640,091 - 124,681,133 (+)NCBI
GRCm386124,663,104 - 124,704,716 (+)NCBI
Sequence:
RefSeq Acc Id: NR_176913
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,640,091 - 124,681,133 (+)NCBI
RefSeq Acc Id: NR_176914
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,640,091 - 124,681,133 (+)NCBI
RefSeq Acc Id: XM_036165852   ⟹   XP_036021745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,640,056 - 124,681,142 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165853   ⟹   XP_036021746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396124,639,887 - 124,681,142 (+)NCBI
Sequence:
RefSeq Acc Id: NP_660112   ⟸   NM_145130
- UniProtKB: O35131 (UniProtKB/Swiss-Prot),   B1B362 (UniProtKB/Swiss-Prot),   Q8BNH6 (UniProtKB/Swiss-Prot),   Q91V01 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000144738   ⟸   ENSMUST00000128721
Ensembl Acc Id: ENSMUSP00000004381   ⟸   ENSMUST00000004381
RefSeq Acc Id: XP_036021746   ⟸   XM_036165853
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036021745   ⟸   XM_036165852
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91V01-F1-model_v2 AlphaFold Q91V01 1-487 view protein structure

Promoters
RGD ID:6839575
Promoter ID:MM_KWN:47548
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:OTTMUST00000057553,   OTTMUST00000057554,   OTTMUST00000057555,   OTTMUST00000057556,   OTTMUST00000057557
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366124,612,386 - 124,613,317 (+)MPROMDB
RGD ID:6839576
Promoter ID:MM_KWN:47549
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B6,   Spleen
Transcripts:OTTMUST00000057558
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366124,650,466 - 124,651,592 (+)MPROMDB
RGD ID:6839577
Promoter ID:MM_KWN:47550
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000057559,   OTTMUST00000057560,   OTTMUST00000057561
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366124,651,386 - 124,653,347 (+)MPROMDB
RGD ID:6890968
Promoter ID:EPDNEW_M8935
Type:initiation region
Name:Lpcat3_1
Description:Mus musculus lysophosphatidylcholine acyltransferase 3 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386124,663,128 - 124,663,188EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1315211 AgrOrtholog
Ensembl Genes ENSMUSG00000004270 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000004381 ENTREZGENE
  ENSMUST00000004381.14 UniProtKB/Swiss-Prot
InterPro LPLAT_7/PORCN-like UniProtKB/Swiss-Prot
  MBOAT_fam UniProtKB/Swiss-Prot
KEGG Report mmu:14792 UniProtKB/Swiss-Prot
MGD MGI:1315211 ENTREZGENE
NCBI Gene 14792 ENTREZGENE
PANTHER LYSOPHOSPHOLIPID ACYLTRANSFERASE 5 UniProtKB/Swiss-Prot
  PORCUPINE UniProtKB/Swiss-Prot
Pfam MBOAT UniProtKB/Swiss-Prot
PhenoGen Lpcat3 PhenoGen
UniProt A0A0N4SUM3_MOUSE UniProtKB/TrEMBL
  B1B362 ENTREZGENE
  MBOA5_MOUSE UniProtKB/Swiss-Prot
  O35131 ENTREZGENE
  Q8BNH6 ENTREZGENE
  Q91V01 ENTREZGENE
UniProt Secondary B1B362 UniProtKB/Swiss-Prot
  O35131 UniProtKB/Swiss-Prot
  Q8BNH6 UniProtKB/Swiss-Prot