LPCAT3 (lysophosphatidylcholine acyltransferase 3) - Rat Genome Database

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Gene: LPCAT3 (lysophosphatidylcholine acyltransferase 3) Canis lupus familiaris
Analyze
Symbol: LPCAT3
Name: lysophosphatidylcholine acyltransferase 3
RGD ID: 12383775
Description: ENCODES a protein that exhibits 1-acylglycerophosphocholine O-acyltransferase activity (inferred); 1-acylglycerophosphoethanolamine O-acyltransferase activity (inferred); 1-acylglycerophosphoserine O-acyltransferase activity (inferred); INVOLVED IN regulation of plasma lipoprotein particle levels (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysophospholipid acyltransferase 5; MBOAT5; membrane bound O-acyltransferase domain containing 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,028,438 - 38,068,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,028,120 - 38,068,502 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,547,836 - 8,588,333 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,380,888 - 38,421,451 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,380,568 - 38,424,143 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,255,853 - 38,296,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,296,886 - 38,337,321 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,026,597 - 8,067,116 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LPCAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,028,438 - 38,068,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,028,120 - 38,068,502 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,547,836 - 8,588,333 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,380,888 - 38,421,451 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,380,568 - 38,424,143 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,255,853 - 38,296,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,296,886 - 38,337,321 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,026,597 - 8,067,116 (-)NCBIUU_Cfam_GSD_1.0
LPCAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,976,185 - 7,018,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,976,185 - 7,018,477 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,085,347 - 7,125,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,955,608 - 6,996,103 (-)NCBINCBI36Build 36hg18NCBI36
Celera128,706,367 - 8,748,731 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,943,813 - 6,986,151 (-)NCBIHuRef
CHM1_1127,084,301 - 7,124,856 (-)NCBICHM1_1
T2T-CHM13v2.0126,989,663 - 7,031,946 (-)NCBIT2T-CHM13v2.0
Lpcat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,639,887 - 124,681,142 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,639,990 - 124,681,381 (+)EnsemblGRCm39 Ensembl
GRCm386124,663,094 - 124,704,716 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,663,027 - 124,704,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv376124,613,122 - 124,654,734 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,628,747 - 124,669,798 (+)NCBIMGSCv36mm8
Celera6126,344,780 - 126,386,441 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Lpcat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,154,690 - 159,196,176 (+)NCBIGRCr8
mRatBN7.24157,468,397 - 157,509,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,468,290 - 157,509,880 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,691,494 - 163,738,379 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,474,396 - 159,521,285 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,121,481 - 158,162,851 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,181,722 - 157,222,997 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,181,795 - 157,222,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,199,925 - 224,240,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,786,349 - 160,827,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,031,284 - 161,072,491 (+)NCBI
Celera4146,207,013 - 146,248,552 (+)NCBICelera
Cytogenetic Map4q42NCBI
Lpcat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,571,028 - 4,605,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,571,028 - 4,605,097 (-)NCBIChiLan1.0ChiLan1.0
LPCAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,542,261 - 12,583,945 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,539,020 - 12,580,609 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,107,925 - 7,149,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,024,015 - 7,065,945 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,024,015 - 7,065,945 (-)Ensemblpanpan1.1panPan2
Lpcat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,132,454 - 102,185,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709799,961 - 851,585 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709800,197 - 852,659 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPCAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,708,020 - 63,746,103 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,707,674 - 63,746,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,143,944 - 66,182,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LPCAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,009,911 - 7,051,391 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,005,701 - 7,051,605 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,165,941 - 1,207,838 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpcat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,611,300 - 3,642,686 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,611,300 - 3,642,682 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LPCAT3
275 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 22 6 2 6 6 6 6 8 10 6
Low 4 4 6
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000022906   ⟹   ENSCAFP00000021277
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2738,028,120 - 38,068,502 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045216   ⟹   ENSCAFP00845035454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2738,380,568 - 38,424,143 (+)Ensembl
RefSeq Acc Id: XM_038439126   ⟹   XP_038295054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02738,380,888 - 38,421,451 (+)NCBI
RefSeq Acc Id: XM_038513791   ⟹   XP_038369719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12738,255,853 - 38,296,355 (+)NCBI
RefSeq Acc Id: XM_038576654   ⟹   XP_038432582
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0278,026,597 - 8,067,116 (-)NCBI
RefSeq Acc Id: XM_038641633   ⟹   XP_038497561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02738,296,886 - 38,337,321 (+)NCBI
RefSeq Acc Id: XM_543842   ⟹   XP_543842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12738,028,438 - 38,068,854 (+)NCBI
Dog10K_Boxer_Tasha278,547,836 - 8,588,333 (-)NCBI
Sequence:
RefSeq Acc Id: XP_543842   ⟸   XM_543842
- UniProtKB: A0A8C0JRC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000021277   ⟸   ENSCAFT00000022906
RefSeq Acc Id: XP_038369719   ⟸   XM_038513791
RefSeq Acc Id: XP_038497561   ⟸   XM_038641633
RefSeq Acc Id: XP_038295054   ⟸   XM_038439126
- UniProtKB: A0A8C0JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432582   ⟸   XM_038576654
- UniProtKB: A0A8C0JRC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035454   ⟸   ENSCAFT00845045216


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014412 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020673 UniProtKB/TrEMBL
  ENSCAFG00040023149 UniProtKB/TrEMBL
  ENSCAFG00845025601 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022906.5 UniProtKB/TrEMBL
  ENSCAFT00000099276.1 UniProtKB/TrEMBL
  ENSCAFT00030037940.1 UniProtKB/TrEMBL
  ENSCAFT00040043003.1 UniProtKB/TrEMBL
  ENSCAFT00845045216.1 UniProtKB/TrEMBL
InterPro MBOAT_fam UniProtKB/TrEMBL
NCBI Gene LPCAT3 ENTREZGENE
PANTHER LYSOPHOSPHOLIPID ACYLTRANSFERASE 5 UniProtKB/TrEMBL
  PORCUPINE UniProtKB/TrEMBL
Pfam MBOAT UniProtKB/TrEMBL
UniProt A0A8C0JRC4 ENTREZGENE
  A0A8C0P0P7_CANLF UniProtKB/TrEMBL
  A0A8I3PY81_CANLF UniProtKB/TrEMBL
  A0A8P0SJA1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54322 ENTREZGENE