LPCAT3 (lysophosphatidylcholine acyltransferase 3) - Rat Genome Database

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Gene: LPCAT3 (lysophosphatidylcholine acyltransferase 3) Sus scrofa
Analyze
Symbol: LPCAT3
Name: lysophosphatidylcholine acyltransferase 3
RGD ID: 14278781
Description: ENCODES a protein that exhibits 1-acylglycerophosphocholine O-acyltransferase activity (inferred); 1-acylglycerophosphoethanolamine O-acyltransferase activity (inferred); 1-acylglycerophosphoserine O-acyltransferase activity (inferred); INVOLVED IN regulation of plasma lipoprotein particle levels (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: lysophospholipid acyltransferase 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,708,010 - 63,756,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,707,674 - 63,746,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,143,944 - 66,182,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
LPCAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,708,010 - 63,756,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,707,674 - 63,746,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,143,944 - 66,182,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LPCAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl126,976,185 - 7,018,477 (-)EnsemblGRCh38hg38GRCh38
GRCh38126,976,185 - 7,018,508 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37127,085,347 - 7,125,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,955,608 - 6,996,103 (-)NCBINCBI36hg18NCBI36
Celera128,706,367 - 8,748,731 (-)NCBI
Cytogenetic Map12p13.31NCBI
HuRef126,943,813 - 6,986,151 (-)NCBIHuRef
CHM1_1127,084,301 - 7,124,856 (-)NCBICHM1_1
Lpcat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,639,762 - 124,681,679 (+)NCBIGRCm39mm39
GRCm39 Ensembl6124,639,990 - 124,681,381 (+)Ensembl
GRCm386124,663,094 - 124,704,716 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,663,027 - 124,704,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv376124,613,122 - 124,654,734 (+)NCBIGRCm37mm9NCBIm37
MGSCv366124,628,747 - 124,669,798 (+)NCBImm8
Celera6126,344,780 - 126,386,441 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Lpcat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24157,468,397 - 157,509,889 (+)NCBI
Rnor_6.0 Ensembl4157,181,795 - 157,222,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04157,181,722 - 157,222,997 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04224,199,925 - 224,240,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,786,349 - 160,827,556 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14161,031,284 - 161,072,491 (+)NCBI
Celera4146,207,013 - 146,248,552 (+)NCBICelera
Cytogenetic Map4q42NCBI
Lpcat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,571,028 - 4,605,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,571,028 - 4,605,097 (-)NCBIChiLan1.0ChiLan1.0
LPCAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1127,024,015 - 7,065,945 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,024,015 - 7,065,945 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0127,107,925 - 7,149,982 (-)NCBIMhudiblu_PPA_v0panPan3
LPCAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,028,438 - 38,068,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,028,120 - 38,068,502 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,547,836 - 8,588,333 (-)NCBI
ROS_Cfam_1.02738,380,888 - 38,421,451 (+)NCBI
UMICH_Zoey_3.12738,255,853 - 38,296,355 (+)NCBI
UNSW_CanFamBas_1.02738,296,886 - 38,337,321 (+)NCBI
UU_Cfam_GSD_1.0278,026,597 - 8,067,116 (-)NCBI
Lpcat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,132,454 - 102,185,140 (+)NCBI
SpeTri2.0NW_004936709800,197 - 852,659 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPCAT3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,009,911 - 7,051,391 (-)NCBI
ChlSab1.1 Ensembl117,005,701 - 7,051,605 (-)Ensembl
Lpcat3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248603,611,300 - 3,642,682 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1
Low 8 4 3 4 2 23 2 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000030030   ⟹   ENSSSCP00000026926
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl563,708,020 - 63,746,103 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000082639   ⟹   ENSSSCP00000064826
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl563,708,010 - 63,756,476 (+)Ensembl
RefSeq Acc Id: XM_003355593   ⟹   XP_003355641
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1563,707,674 - 63,746,369 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003355641 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003355641   ⟸   XM_003355593
- UniProtKB: I3LS35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026926   ⟸   ENSSSCT00000030030
RefSeq Acc Id: ENSSSCP00000064826   ⟸   ENSSSCT00000082639


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070020681 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000026926 UniProtKB/TrEMBL
  ENSSSCP00000064826 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070034514 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030030 UniProtKB/TrEMBL
  ENSSSCT00000082639 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070041116 UniProtKB/TrEMBL
InterPro MBOAT_fam UniProtKB/TrEMBL
KEGG Report ssc:100627653 UniProtKB/TrEMBL
NCBI Gene LPCAT3 ENTREZGENE
Pfam MBOAT UniProtKB/TrEMBL
UniProt A0A481BA38_PIG UniProtKB/TrEMBL
  A0A4X1V0I6_PIG UniProtKB/TrEMBL
  I3LS35 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89790 ENTREZGENE