Ptprt (protein tyrosine phosphatase, receptor type, T) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ptprt (protein tyrosine phosphatase, receptor type, T) Mus musculus
Analyze
Symbol: Ptprt
Name: protein tyrosine phosphatase, receptor type, T
RGD ID: 1320108
MGI Page MGI
Description: Enables several functions, including alpha-catenin binding activity; beta-catenin binding activity; and delta-catenin binding activity. Acts upstream of or within protein dephosphorylation. Predicted to be located in cell surface and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and skeleton. Human ortholog(s) of this gene implicated in colorectal cancer and esophagus squamous cell carcinoma. Orthologous to human PTPRT (protein tyrosine phosphatase receptor type T).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: KIAA0283; mKIAA0283; mRPTPrho; R-PTP-T; receptor protein tyrosine phosphatase-rho; receptor-type tyrosine-protein phosphatase rho; receptor-type tyrosine-protein phosphatase T; RP; RPTP-rfo; RPTP-rho; RPTPmam4; RPTPrho
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392161,363,908 - 162,503,106 (-)NCBIGRCm39mm39
GRCm39 Ensembl2161,363,910 - 162,503,067 (-)Ensembl
GRCm382161,521,988 - 162,661,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2161,521,990 - 162,661,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv372161,353,359 - 162,486,883 (-)NCBIGRCm37mm9NCBIm37
MGSCv362161,219,064 - 162,352,588 (-)NCBImm8
Celera2167,464,067 - 168,594,641 (-)NCBICelera
Cytogenetic Map2H2NCBI
cM Map281.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:8889548   PMID:9486824   PMID:9602027   PMID:10349636   PMID:10760573   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11423001   PMID:11814386   PMID:12477932   PMID:14681479  
PMID:15033168   PMID:16139793   PMID:16141072   PMID:16141073   PMID:16973135   PMID:17953485   PMID:18287559   PMID:18799693   PMID:20151419   PMID:21677750   PMID:21873635   PMID:22767509  
PMID:24154525   PMID:24895325   PMID:24949727   PMID:25826454   PMID:31065022   PMID:31944180   PMID:32938684  


Genomics

Comparative Map Data
Ptprt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392161,363,908 - 162,503,106 (-)NCBIGRCm39mm39
GRCm39 Ensembl2161,363,910 - 162,503,067 (-)Ensembl
GRCm382161,521,988 - 162,661,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2161,521,990 - 162,661,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv372161,353,359 - 162,486,883 (-)NCBIGRCm37mm9NCBIm37
MGSCv362161,219,064 - 162,352,588 (-)NCBImm8
Celera2167,464,067 - 168,594,641 (-)NCBICelera
Cytogenetic Map2H2NCBI
cM Map281.91NCBI
PTPRT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2042,072,752 - 43,189,970 (-)EnsemblGRCh38hg38GRCh38
GRCh382042,029,959 - 43,189,906 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372040,701,396 - 41,818,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362040,134,806 - 41,251,971 (-)NCBINCBI36hg18NCBI36
Build 342040,134,806 - 41,251,971NCBI
Celera2037,412,018 - 38,527,269 (-)NCBI
Cytogenetic Map20q12-q13.11NCBI
HuRef2037,438,892 - 38,251,263 (-)NCBIHuRef
CHM1_12040,605,787 - 41,722,632 (-)NCBICHM1_1
Ptprt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23150,189,343 - 151,287,977 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3150,194,859 - 151,288,124 (-)Ensembl
Rnor_6.03157,537,192 - 158,328,984 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3157,544,583 - 158,328,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03163,757,891 - 164,563,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43152,380,772 - 153,172,076 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13152,154,289 - 153,093,067 (-)NCBI
Celera3148,867,063 - 149,656,746 (-)NCBICelera
Cytogenetic Map3q42NCBI
Ptprt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544514,185,732 - 14,952,980 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544514,185,751 - 14,961,000 (+)NCBIChiLan1.0ChiLan1.0
PTPRT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12039,494,674 - 40,317,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2039,502,794 - 40,317,701 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02038,399,267 - 39,526,776 (-)NCBIMhudiblu_PPA_v0panPan3
PTPRT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,992,957 - 30,764,469 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2430,000,637 - 30,820,835 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2429,632,448 - 30,668,607 (-)NCBI
ROS_Cfam_1.02430,697,308 - 31,823,739 (-)NCBI
ROS_Cfam_1.0 Ensembl2430,697,341 - 31,730,741 (-)Ensembl
UMICH_Zoey_3.12429,966,056 - 30,996,470 (-)NCBI
UNSW_CanFamBas_1.02430,064,525 - 31,108,057 (-)NCBI
UU_Cfam_GSD_1.02430,613,756 - 31,646,408 (-)NCBI
Ptprt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640178,978,646 - 179,802,109 (-)NCBI
SpeTri2.0NW_0049365303,555,070 - 4,327,558 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1744,714,620 - 45,880,822 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11744,717,539 - 45,880,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21749,805,722 - 49,866,203 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1220,613,352 - 21,720,417 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605069,391,453 - 70,534,508 (+)NCBIVero_WHO_p1.0
Ptprt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479011,368,745 - 12,144,895 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH131957  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,522,032 - 161,522,249UniSTSGRCm38
MGSCv372161,347,768 - 161,347,985UniSTSGRCm37
Celera2167,458,476 - 167,458,693UniSTS
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
MHAa54b7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,657,349 - 162,657,527UniSTSGRCm38
MGSCv372162,483,085 - 162,483,263UniSTSGRCm37
Celera2168,591,100 - 168,591,278UniSTS
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
Whitehead_YAC2 UniSTS
D2Mit142  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,591,854 - 161,591,971UniSTSGRCm38
MGSCv372161,417,590 - 161,417,707UniSTSGRCm37
Celera2167,539,444 - 167,539,561UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS
Whitehead Genetic278.7UniSTS
Whitehead_YAC2 UniSTS
D2Mit170  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,654,924 - 162,655,060UniSTSGRCm38
MGSCv372162,480,660 - 162,480,796UniSTSGRCm37
Celera2168,588,675 - 168,588,811UniSTS
Cytogenetic Map2H2UniSTS
cM Map296.0UniSTS
Whitehead Genetic280.9UniSTS
Whitehead/MRC_RH21860.25UniSTS
Whitehead_YAC2 UniSTS
D2Mit197  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,538,069 - 161,538,215UniSTSGRCm38
MGSCv372161,363,805 - 161,363,951UniSTSGRCm37
Celera2167,474,513 - 167,474,659UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS
Whitehead Genetic278.7UniSTS
Whitehead_YAC2 UniSTS
D2Mit263.3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,354,946 - 162,355,057UniSTSGRCm38
MGSCv372162,180,682 - 162,180,793UniSTSGRCm37
Celera2168,292,717 - 168,292,828UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS
cM Map2 UniSTS
Whitehead Genetic278.7UniSTS
D2Mit310  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,195,537 - 162,195,674UniSTSGRCm38
MGSCv372162,021,273 - 162,021,410UniSTSGRCm37
Celera2168,134,223 - 168,134,348UniSTS
Cytogenetic Map2H2UniSTS
cM Map277.6UniSTS
Whitehead Genetic277.6UniSTS
D2Mit412  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,344,842 - 162,344,966UniSTSGRCm38
MGSCv372162,170,578 - 162,170,702UniSTSGRCm37
Celera2168,282,627 - 168,282,735UniSTS
Cytogenetic Map2H2UniSTS
cM Map278.7UniSTS
Whitehead Genetic278.7UniSTS
Whitehead_YAC2 UniSTS
D2Mit452  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,386,799 - 162,386,921UniSTSGRCm38
MGSCv372162,212,535 - 162,212,657UniSTSGRCm37
Celera2168,321,241 - 168,321,367UniSTS
Cytogenetic Map2H2UniSTS
cM Map278.7UniSTS
Whitehead Genetic278.7UniSTS
D2Mit452.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,386,681 - 162,386,823UniSTSGRCm38
MGSCv372162,212,417 - 162,212,559UniSTSGRCm37
Celera2168,321,123 - 168,321,265UniSTS
Cytogenetic Map2H2UniSTS
cM Map278.7UniSTS
cM Map2 UniSTS
Whitehead Genetic278.7UniSTS
D2Mit497  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,733,481 - 161,733,729UniSTSGRCm38
MGSCv372161,559,217 - 161,559,465UniSTSGRCm37
Celera2167,680,880 - 167,681,107UniSTS
Celera2155,324,116 - 155,324,364UniSTS
Cytogenetic Map2H2UniSTS
cM Map278.7UniSTS
Whitehead Genetic278.7UniSTS
AI450344  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381380,895,584 - 80,895,780UniSTSGRCm38
MGSCv371381,034,845 - 81,035,041UniSTSGRCm37
Celera1383,160,715 - 83,160,911UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
Whitehead/MRC_RH13704.29UniSTS
UniSTS:234591  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,527,515 - 161,527,820UniSTSGRCm38
MGSCv372161,353,251 - 161,353,556UniSTSGRCm37
Celera2167,463,959 - 167,464,264UniSTS
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
UniSTS:237065  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381380,885,054 - 80,885,246UniSTSGRCm38
MGSCv371381,024,315 - 81,024,507UniSTSGRCm37
Celera1383,150,185 - 83,150,377UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
MT2016  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,355,029 - 162,355,165UniSTSGRCm38
MGSCv372162,180,765 - 162,180,901UniSTSGRCm37
Celera2168,292,800 - 168,292,930UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS
Whitehead Genetic278.7UniSTS
G42933  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,521,982 - 161,522,110UniSTSGRCm38
MGSCv372161,347,718 - 161,347,846UniSTSGRCm37
Celera2167,458,426 - 167,458,554UniSTS
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
G44775  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382162,013,393 - 162,014,766UniSTSGRCm38
MGSCv372161,839,129 - 161,840,502UniSTSGRCm37
Cytogenetic Map2H2UniSTS
cM Map293.0UniSTS
Ptpru  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H2UniSTS
cM Map461.35UniSTS
cM Map293.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145676855179677006Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132182239166182410Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127822099161822198Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151799021162895154Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152857301162355165Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152857301169276004Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145355029179355165Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142751556178800659Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145386799179386921Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135857301169857441Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2139124680173124809Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144673941181254801Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155982127182113224Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156354671182113224Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158236417178800659Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2150146982182113224Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151936377182113224Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127822099161822198Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151799021162895154Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150370301182113224Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151799021162895154Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143931525165823099Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149394987182113224Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143931525169276004Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148822973182113224Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135857301169857441Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135857301169857441Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135857301169857441Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151799021164277226Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150370301182113224Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142586427176586530Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150370301182113224Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148396284182113224Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133302991167303138Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133302991167303138Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129500000163500000Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151867353174547331Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152487900182113224Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124600000168400000Mouse
12801461Intim1_mintima modifier 1 (mouse)2142586427176586530Mouse
11353826Bdln10_mbody length 10 (mouse)2140599562174599562Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135590624173607823Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160769245169952882Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160769245169952882Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6425
Count of miRNA genes:900
Interacting mature miRNAs:1237
Transcripts:ENSMUST00000109441, ENSMUST00000109442, ENSMUST00000109443, ENSMUST00000109445, ENSMUST00000129015, ENSMUST00000153770
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF152556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF162856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF162857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF244125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF275265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM900160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000109441   ⟹   ENSMUSP00000105067
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2161,369,429 - 162,503,067 (-)Ensembl
GRCm38.p6 Ensembl2161,527,509 - 162,661,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109442   ⟹   ENSMUSP00000105068
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2161,368,277 - 162,503,014 (-)Ensembl
GRCm38.p6 Ensembl2161,526,357 - 162,661,094 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109443   ⟹   ENSMUSP00000105069
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2161,363,910 - 162,503,067 (-)Ensembl
GRCm38.p6 Ensembl2161,521,990 - 162,661,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109445   ⟹   ENSMUSP00000105071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2161,363,910 - 162,503,067 (-)Ensembl
GRCm38.p6 Ensembl2161,521,990 - 162,661,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129015
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2161,853,935 - 161,977,371 (-)Ensembl
GRCm38.p6 Ensembl2162,012,015 - 162,135,451 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2161,539,929 - 161,642,075 (-)Ensembl
GRCm38.p6 Ensembl2161,698,009 - 161,800,155 (-)Ensembl
RefSeq Acc Id: NM_001291149   ⟹   NP_001278078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,067 (-)NCBI
GRCm382161,521,988 - 162,661,147 (-)NCBI
Celera2167,458,432 - 168,594,641 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291150   ⟹   NP_001278079
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,067 (-)NCBI
GRCm382161,521,988 - 162,661,147 (-)NCBI
Celera2167,458,432 - 168,594,641 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291151   ⟹   NP_001278080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,067 (-)NCBI
GRCm382161,521,988 - 162,661,147 (-)NCBI
Celera2167,458,432 - 168,594,641 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021464   ⟹   NP_067439
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,067 (-)NCBI
GRCm382161,521,988 - 162,661,147 (-)NCBI
MGSCv372161,353,359 - 162,486,883 (-)RGD
Celera2167,458,432 - 168,594,641 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239384   ⟹   XP_011237686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239385   ⟹   XP_011237687
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,486,586 (-)NCBI
GRCm382161,521,988 - 162,646,546 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316586   ⟹   XP_017172075
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316587   ⟹   XP_017172076
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316590   ⟹   XP_017172079
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316592   ⟹   XP_017172081
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316593   ⟹   XP_017172082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316594   ⟹   XP_017172083
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316595   ⟹   XP_017172084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316597   ⟹   XP_017172086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316598   ⟹   XP_017172087
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316600   ⟹   XP_017172089
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
GRCm382161,528,368 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248790   ⟹   XP_030104650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
GRCm382161,521,988 - 162,661,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159701   ⟹   XP_036015594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159707   ⟹   XP_036015600
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,370,288 - 162,503,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159708   ⟹   XP_036015601
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,488,466 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159709   ⟹   XP_036015602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392161,363,908 - 162,503,034 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001278078 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278079 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278080 (Get FASTA)   NCBI Sequence Viewer  
  NP_067439 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237686 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237687 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172075 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172076 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172079 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172081 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172082 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172083 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172084 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172086 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172087 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172089 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104650 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015594 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015600 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015601 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD34158 (Get FASTA)   NCBI Sequence Viewer  
  AAF44712 (Get FASTA)   NCBI Sequence Viewer  
  AAF78091 (Get FASTA)   NCBI Sequence Viewer  
  AAF82400 (Get FASTA)   NCBI Sequence Viewer  
  AAF82401 (Get FASTA)   NCBI Sequence Viewer  
  AAK18741 (Get FASTA)   NCBI Sequence Viewer  
  AAK18742 (Get FASTA)   NCBI Sequence Viewer  
  AAK18743 (Get FASTA)   NCBI Sequence Viewer  
  BAD90179 (Get FASTA)   NCBI Sequence Viewer  
  EDL06304 (Get FASTA)   NCBI Sequence Viewer  
  Q99M80 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_067439   ⟸   NM_021464
- Peptide Label: isoform d precursor
- UniProtKB: Q99M80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278078   ⟸   NM_001291149
- Peptide Label: isoform a precursor
- UniProtKB: Q99M80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278080   ⟸   NM_001291151
- Peptide Label: isoform c precursor
- Sequence:
RefSeq Acc Id: NP_001278079   ⟸   NM_001291150
- Peptide Label: isoform b precursor
- UniProtKB: Q99M80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011237686   ⟸   XM_011239384
- Peptide Label: isoform X13
- UniProtKB: Q99M80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011237687   ⟸   XM_011239385
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017172075   ⟸   XM_017316586
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017172089   ⟸   XM_017316600
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017172084   ⟸   XM_017316595
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017172082   ⟸   XM_017316593
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017172087   ⟸   XM_017316598
- Peptide Label: isoform X11
- UniProtKB: B1AQN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172081   ⟸   XM_017316592
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017172086   ⟸   XM_017316597
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017172079   ⟸   XM_017316590
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017172076   ⟸   XM_017316587
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017172083   ⟸   XM_017316594
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030104650   ⟸   XM_030248790
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000105069   ⟸   ENSMUST00000109443
RefSeq Acc Id: ENSMUSP00000105067   ⟸   ENSMUST00000109441
RefSeq Acc Id: ENSMUSP00000105068   ⟸   ENSMUST00000109442
RefSeq Acc Id: ENSMUSP00000105071   ⟸   ENSMUST00000109445
RefSeq Acc Id: XP_036015594   ⟸   XM_036159701
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036015602   ⟸   XM_036159709
- Peptide Label: isoform X15
RefSeq Acc Id: XP_036015601   ⟸   XM_036159708
- Peptide Label: isoform X15
RefSeq Acc Id: XP_036015600   ⟸   XM_036159707
- Peptide Label: isoform X14
Promoters
RGD ID:6879556
Promoter ID:EPDNEW_M3225
Type:multiple initiation site
Name:Ptprt_1
Description:Mus musculus protein tyrosine phosphatase, receptor type, T ,transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382162,661,083 - 162,661,143EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1321152 AgrOrtholog
Ensembl Genes ENSMUSG00000053141 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000105067 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105068 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105069 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105071 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000109441 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109442 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000109443 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109445 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPRJ_TM UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19281 UniProtKB/Swiss-Prot
MGD MGI:1321152 ENTREZGENE
NCBI Gene 19281 ENTREZGENE
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTP_tm UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptprt PhenoGen
PRINTS MAMDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AQN2 ENTREZGENE, UniProtKB/TrEMBL
  PTPRT_MOUSE UniProtKB/Swiss-Prot
  Q571D5_MOUSE UniProtKB/TrEMBL
  Q99M80 ENTREZGENE
UniProt Secondary Q99M81 UniProtKB/Swiss-Prot
  Q99M82 UniProtKB/Swiss-Prot
  Q9JIZ1 UniProtKB/Swiss-Prot
  Q9JIZ2 UniProtKB/Swiss-Prot
  Q9JKC2 UniProtKB/Swiss-Prot
  Q9JLP0 UniProtKB/Swiss-Prot