Dhx30 (DExH-box helicase 30) - Rat Genome Database

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Gene: Dhx30 (DExH-box helicase 30) Mus musculus
Analyze
Symbol: Dhx30
Name: DExH-box helicase 30
RGD ID: 1318917
MGI Page MGI
Description: Enables RNA helicase activity. Involved in central nervous system development. Located in cytoplasm. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and integumental system. Orthologous to human DHX30 (DExH-box helicase 30).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810477H02Rik; AA682062; ATP-dependent RNA helicase DHX30; AU015424; C130058C04Rik; Ddx30; DEAH (Asp-Glu-Ala-His) box polypeptide 30; DEAH box protein 30; hel; HELG; putative ATP-dependent RNA helicase DHX30; Ret-CoR
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399109,913,387 - 109,946,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9109,913,388 - 109,946,898 (-)EnsemblGRCm39 Ensembl
GRCm389110,084,319 - 110,117,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,084,320 - 110,117,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv379109,986,824 - 110,018,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369109,929,496 - 109,960,758 (-)NCBIMGSCv36mm8
Celera9109,812,519 - 109,843,847 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
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Notes
Source
Original Reference(s)
Dhx30Mouseautism spectrum disorder  ISORGD:13189168554872ClinVar Annotator: match by term: Autism, susceptiblity toClinVarPMID:25741868
Dhx30Mouseautistic disorder  ISORGD:13189168554872ClinVar Annotator: match by term: AutismClinVarPMID:28327206|PMID:29100085|PMID:32581362
Dhx30MouseDevelopmental Disabilities  ISORGD:13189168554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:25741868|PMID:28327206|PMID:29100085|PMID:32581362
Dhx30Mouseepilepsy  ISORGD:13189168554872ClinVar Annotator: match by term: SeizureClinVarPMID:29100085
Dhx30Mousegenetic disease  ISORGD:13189168554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868|PMID:29100085|PMID:34020708
Dhx30MouseNEURODEVELOPMENTAL DISORDER WITH SEVERE MOTOR IMPAIRMENT AND ABSENT LANGUAGE  ISORGD:13189168554872ClinVar Annotator: match by term: DHX30-related condition | ClinVar Annotator: match by term: Neurodevelopmental disorder more ...ClinVarPMID:25741868|PMID:28327206|PMID:28492532|PMID:29100085|PMID:32581362|PMID:34020708
Dhx30MouseProgressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy  ISORGD:13189168554872ClinVar Annotator: match by term: Microcephaly, progressive, with seizures and cerebral and cerebellar atrophyClinVarPMID:28492532
Object Symbol
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Original Reference(s)
Dhx30MouseProstatic Neoplasms  ISORGD:131891611554173CTD Direct Evidence: marker/mechanismCTDPMID:29610475
Object Symbol
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Original Reference(s)
Dhx30MouseNEURODEVELOPMENTAL DISORDER WITH SEVERE MOTOR IMPAIRMENT AND ABSENT LANGUAGE  ISORGD:13189167240710 OMIM 

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Original Reference(s)
Dhx30Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of DHX30 mRNACTDPMID:22206623
Dhx30Mouse17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of DHX30 mRNACTDPMID:17942748
Dhx30Mouse17beta-estradiol multiple interactionsISORGD:13189166480464Estradiol inhibits the reaction [ESR1 protein binds to DHX30 protein]CTDPMID:29389661
Dhx30Mouse17beta-hydroxy-17-methylestra-4,9,11-trien-3-one multiple interactionsISORGD:13189166480464[Metribolone binds to and affects the folding of AR protein] inhibits the reaction [AR protein more ...CTDPMID:28751236
Dhx30Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of DHX30 mRNACTDPMID:21570461
Dhx30Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13088886480464Tetrachlorodibenzodioxin results in increased expression of DHX30 mRNACTDPMID:33387578
Dhx30Mouse2,4-dinitrotoluene affects expressionISORGD:130888864804642,4-dinitrotoluene affects the expression of DHX30 mRNACTDPMID:21346803
Dhx30Mouse2,6-dinitrotoluene affects expressionISORGD:130888864804642,6-dinitrotoluene affects the expression of DHX30 mRNACTDPMID:21346803
Dhx30Mouse2-methylcholine affects expressionISORGD:13189166480464beta-methylcholine affects the expression of DHX30 mRNACTDPMID:21179406
Dhx30Mouse3-chloropropane-1,2-diol increases expressionISORGD:13088886480464alpha-Chlorohydrin results in increased expression of DHX30 proteinCTDPMID:34915118
Dhx30Mouse4,4'-sulfonyldiphenol multiple interactionsISORGD:13189166480464bisphenol S inhibits the reaction [ESR1 protein binds to DHX30 protein]CTDPMID:29389661
Dhx30Mouseacrolein multiple interactionsISORGD:13189166480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...CTDPMID:32699268|PMID:32845096
Dhx30Mouseaflatoxin B1 decreases methylationISORGD:13189166480464Aflatoxin B1 results in decreased methylation of DHX30 intronCTDPMID:30157460
Dhx30Mouseallethrin multiple interactionsISORGD:13088886480464[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...CTDPMID:34896426
Dhx30Mousealpha-pinene multiple interactionsISORGD:13189166480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...CTDPMID:32699268
Dhx30Mousebenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of DHX30 mRNACTDPMID:22228805
Dhx30Mousebenzo[e]pyrene decreases methylationISORGD:13189166480464benzo(e)pyrene results in decreased methylation of DHX30 intronCTDPMID:30157460
Dhx30Mousebeta-lapachone increases expressionISORGD:13189166480464beta-lapachone results in increased expression of DHX30 mRNACTDPMID:38218311
Dhx30Mousebis(2-ethylhexyl) phthalate increases expressionEXP 6480464Diethylhexyl Phthalate results in increased expression of DHX30 mRNACTDPMID:33754040
Dhx30Mousebisphenol A increases expressionISORGD:13088886480464bisphenol A results in increased expression of DHX30 mRNACTDPMID:25181051|PMID:34947998

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Biological Process

  
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Original Reference(s)
Dhx30Mousecentral nervous system development involved_inIDA 2290270 PMID:25219788UniProtPMID:25219788
Dhx30Mousemitochondrial large ribosomal subunit assembly involved_inISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30Mousemitochondrial large ribosomal subunit assembly involved_inISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024

Cellular Component
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Original Reference(s)
Dhx30Mousecytoplasm located_inISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30Mousecytoplasm located_inIDA 2290270 PMID:25219788UniProtPMID:25219788
Dhx30Mousecytoplasm located_inISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30Mousecytoplasm is_active_inIBAPANTHER:PTN002707150|UniProtKB:Q9H2U1|MGI:1920081|UniProtKB:Q7L2E3|MGI:19194122290270 GO_CentralGO_REF:0000033
Dhx30Mousecytosol located_inIEAUniProtKB:Q7L2E3|ensembl:ENSP000004056202290270 EnsemblGO_REF:0000107
Dhx30Mousecytosol located_inISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30Mousemitochondrial matrix located_inISORGD:13189169068941 PMID:23275553FlyBasePMID:23275553
Dhx30Mousemitochondrial nucleoid located_inISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30Mousemitochondrial nucleoid located_inISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30Mousemitochondrion located_inISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30Mousemitochondrion located_inISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30Mousenucleus is_active_inIBAPANTHER:PTN000717298|UniProtKB:Q9H2U12290270 GO_CentralGO_REF:0000033
Dhx30Mouseribonucleoprotein granule located_inISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30Mouseribonucleoprotein granule located_inISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
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Molecular Function
1 to 20 of 20 rows

  
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Original Reference(s)
Dhx30MouseATP binding enablesIEAUniProtKB-KW:KW-00672290270 UniProtGO_REF:0000043
Dhx30MouseATP hydrolysis activity enablesIEARHEA:130652290270 RHEAGO_REF:0000116
Dhx30Mousechromatin binding enablesISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30Mousechromatin binding enablesISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30MouseDNA helicase activity enablesIBAPANTHER:PTN001053965|MGI:1919412|FB:FBgn0032883|UniProtKB:Q9H2U12290270 GO_CentralGO_REF:0000033
Dhx30Mousedouble-stranded RNA binding enablesISOUniProtKB:Q7L2E32290270 PMID:21266579MGIPMID:21266579
Dhx30MouseG-quadruplex RNA binding enablesIBAPANTHER:PTN001053965|UniProtKB:Q9H2U1|FB:FBgn00328832290270 GO_CentralGO_REF:0000033
Dhx30Mouseprotein binding enablesISOUniProtKB:Q8K3Y69068941PMID:21204022UniProtPMID:21204022|REF_RGD_ID:8553585
Dhx30Mouseprotein binding enablesISOUniProtKB:P135699068941 PMID:35156780, PMID:36012204IntActPMID:35156780|PMID:36012204
Dhx30Mouseprotein binding enablesISOUniProtKB:P195259068941 PMID:23455922, PMID:32707033IntActPMID:23455922|PMID:32707033
Dhx30Mouseprotein binding enablesISOUniProtKB:P19525|UniProtKB:Q96C10|UniProtKB:Q9Y6K59068941 PMID:21903422IntActPMID:21903422
Dhx30Mouseprotein binding enablesISOUniProtKB:Q9UKV8|UniProtKB:Q9UL189068941 PMID:17932509UniProtPMID:17932509
Dhx30Mouseprotein binding enablesISOUniProtKB:Q7Z2W49068941PMID:21204022UniProtPMID:21204022|REF_RGD_ID:8553585
Dhx30Mouseprotein binding enablesISOUniProtKB:P164019068941 PMID:30021884, PMID:33961781IntActPMID:30021884|PMID:33961781
Dhx30MouseRNA binding enablesISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30MouseRNA binding enablesISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30MouseRNA helicase activity enablesISOUniProtKB:Q7L2E32290270 GO_CentralGO_REF:0000119
Dhx30MouseRNA helicase activity enablesISSUniProtKB:Q7L2E32290270 UniProtGO_REF:0000024
Dhx30MouseRNA helicase activity enablesIDA 2290270 PMID:25219788UniProtPMID:25219788
Dhx30MouseRNA helicase activity enablesIBAPANTHER:PTN001053965|UniProtKB:Q9H2U1|UniProtKB:Q7L2E3|MGI:1920081|FB:FBgn00328832290270 GO_CentralGO_REF:0000033
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Reference Title
Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12693553   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15741177   PMID:15782199  
PMID:16033648   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21266579   PMID:21873635   PMID:22922362   PMID:24194600   PMID:25219788   PMID:27626380   PMID:28378742  
PMID:30995482   PMID:31040226   PMID:31138677   PMID:32325033   PMID:32434143   PMID:33554859   PMID:35012549   PMID:36114006   PMID:37142655   PMID:38355793   PMID:38433184  



Dhx30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399109,913,387 - 109,946,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9109,913,388 - 109,946,898 (-)EnsemblGRCm39 Ensembl
GRCm389110,084,319 - 110,117,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,084,320 - 110,117,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv379109,986,824 - 110,018,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369109,929,496 - 109,960,758 (-)NCBIMGSCv36mm8
Celera9109,812,519 - 109,843,847 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.86NCBI
DHX30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38347,803,138 - 47,850,193 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl347,802,909 - 47,850,195 (+)EnsemblGRCh38hg38GRCh38
GRCh37347,844,628 - 47,891,683 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,819,655 - 47,866,687 (+)NCBINCBI36Build 36hg18NCBI36
Build 34347,819,654 - 47,866,686NCBI
Celera347,794,449 - 47,841,545 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef347,899,640 - 47,947,043 (+)NCBIHuRef
CHM1_1347,795,669 - 47,842,932 (+)NCBICHM1_1
T2T-CHM13v2.0347,830,461 - 47,877,524 (+)NCBIT2T-CHM13v2.0
Dhx30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,943,186 - 118,975,319 (-)NCBIGRCr8
mRatBN7.28110,064,751 - 110,096,954 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,064,752 - 110,097,381 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,680,523 - 115,712,489 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,879,711 - 113,911,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,722,475 - 111,754,443 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,160,315 - 118,194,674 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,160,299 - 118,187,791 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,515,769 - 117,547,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,438,389 - 114,470,350 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18114,457,844 - 114,489,805 (-)NCBI
Celera8109,352,489 - 109,384,567 (-)NCBICelera
Cytogenetic Map8q32NCBI
Dhx30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,537,608 - 24,561,293 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,537,608 - 24,549,771 (-)NCBIChiLan1.0ChiLan1.0
DHX30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,770,959 - 47,818,666 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,775,971 - 47,823,434 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,715,275 - 47,762,872 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,833,785 - 48,858,037 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,819,125 - 48,857,964 (+)Ensemblpanpan1.1panPan2
DHX30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,102,064 - 41,131,464 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,102,080 - 41,129,429 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,019,046 - 41,048,443 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02041,585,579 - 41,614,984 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,585,582 - 41,614,892 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12040,827,709 - 40,857,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,229,130 - 41,258,515 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,508,803 - 41,538,213 (-)NCBIUU_Cfam_GSD_1.0
Dhx30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,870,062 - 201,905,658 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,421,094 - 1,455,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365961,419,165 - 1,454,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHX30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,617,376 - 30,632,497 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,602,008 - 30,632,506 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21333,878,421 - 33,908,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DHX30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1229,191,527 - 9,239,445 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl229,206,175 - 9,239,372 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041157,866,168 - 157,919,224 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dhx30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,656,361 - 73,681,999 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,656,378 - 73,685,863 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Dhx30
1130 total Variants

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Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3		 pathogenic
GRCh38/hg38 15q24.3-26.3(chr15:77543797-101843411)x3 copy number gain See cases [RCV000052347] Chr15:77543797..101843411 [GRCh38]
Chr15:77836139..102383614 [GRCh37]
Chr15:75623194..100201137 [NCBI36]
Chr15:15q24.3-26.3		 pathogenic
GRCh38/hg38 15q25.1(chr15:79552851-80526230)x3 copy number gain See cases [RCV000052107] Chr15:79552851..80526230 [GRCh38]
Chr15:79845193..80818571 [GRCh37]
Chr15:77632248..78605626 [NCBI36]
Chr15:15q25.1		 uncertain significance
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3		 pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3 copy number gain See cases [RCV000143019] Chr15:72154949..101920998 [GRCh38]
Chr15:72447290..102461201 [GRCh37]
Chr15:70234344..100278724 [NCBI36]
Chr15:15q23-26.3		 pathogenic
GRCh37/hg19 15q24.2-26.3(chr15:76061144-102429112)x3 copy number gain See cases [RCV000511332] Chr15:76061144..102429112 [GRCh37]
Chr15:15q24.2-26.3		 pathogenic
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3 copy number gain See cases [RCV000240602] Chr15:64637227..102509910 [GRCh37]
Chr15:15q22.31-26.3		 pathogenic
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3 copy number gain not provided [RCV000415836] Chr15:59297293..102480888 [GRCh37]
Chr15:15q22.1-26.3		 likely pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
1 to 10 of 44 rows

Predicted Target Of
Summary Value
Count of predictions:2823
Count of miRNA genes:700
Interacting mature miRNAs:890
Transcripts:ENSMUST00000035056, ENSMUST00000062368, ENSMUST00000111991, ENSMUST00000127744, ENSMUST00000128639, ENSMUST00000128979, ENSMUST00000133529, ENSMUST00000136857, ENSMUST00000136969, ENSMUST00000138940, ENSMUST00000142911, ENSMUST00000144180, ENSMUST00000145932, ENSMUST00000148287, ENSMUST00000148445, ENSMUST00000148526, ENSMUST00000149199, ENSMUST00000149251, ENSMUST00000165596
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse

1 to 10 of 45 rows
AU015424  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,084,339 - 110,084,569UniSTSGRCm38
MGSCv379109,986,843 - 109,987,073UniSTSGRCm37
Celera9109,812,538 - 109,812,768UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91119.68UniSTS
Dhx30  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,086,662 - 110,087,863UniSTSGRCm38
MGSCv379109,989,166 - 109,990,367UniSTSGRCm37
Celera9109,814,861 - 109,816,062UniSTS
Cytogenetic Map9F2UniSTS
cM Map9 UniSTS
MTH1734  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,105,359 - 110,105,529UniSTSGRCm38
MGSCv379110,007,863 - 110,008,033UniSTSGRCm37
Celera9109,833,540 - 109,833,710UniSTS
Cytogenetic Map9F2UniSTS
cM Map961.0UniSTS
Whitehead Genetic960.1UniSTS
D9Mit348.3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,105,512 - 110,105,630UniSTSGRCm38
MGSCv379110,008,016 - 110,008,134UniSTSGRCm37
Celera9109,833,693 - 109,833,811UniSTS
Cytogenetic Map9F2UniSTS
cM Map961.0UniSTS
cM Map9 UniSTS
Whitehead_YAC9 UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
RH124355  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,084,504 - 110,084,585UniSTSGRCm38
MGSCv379109,987,008 - 109,987,089UniSTSGRCm37
Celera9109,812,703 - 109,812,784UniSTS
Cytogenetic Map9F2UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS






1 to 30 of 70 rows
RefSeq Transcripts NM_001252682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB047557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 70 rows

Ensembl Acc Id: ENSMUST00000062368   ⟹   ENSMUSP00000062622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,388 - 109,930,155 (-)Ensembl
GRCm38.p6 Ensembl9110,084,320 - 110,101,087 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111991   ⟹   ENSMUSP00000107622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,390 - 109,946,479 (-)Ensembl
GRCm38.p6 Ensembl9110,084,322 - 110,117,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000165596   ⟹   ENSMUSP00000129174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,389 - 109,944,145 (-)Ensembl
GRCm38.p6 Ensembl9110,084,321 - 110,115,077 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196171   ⟹   ENSMUSP00000143616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,389 - 109,946,505 (-)Ensembl
GRCm38.p6 Ensembl9110,084,321 - 110,117,437 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,917,011 - 109,920,539 (-)Ensembl
GRCm38.p6 Ensembl9110,087,943 - 110,091,471 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196455   ⟹   ENSMUSP00000143751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,922,178 - 109,930,106 (-)Ensembl
GRCm38.p6 Ensembl9110,093,110 - 110,101,038 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196497   ⟹   ENSMUSP00000143529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,927,817 - 109,944,374 (-)Ensembl
GRCm38.p6 Ensembl9110,098,749 - 110,115,306 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,943,244 - 109,946,442 (-)Ensembl
GRCm38.p6 Ensembl9110,114,176 - 110,117,374 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,915,387 - 109,916,522 (-)Ensembl
GRCm38.p6 Ensembl9110,086,319 - 110,087,454 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197182   ⟹   ENSMUSP00000142846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,938,182 - 109,946,487 (-)Ensembl
GRCm38.p6 Ensembl9110,109,114 - 110,117,419 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,942,146 - 109,946,499 (-)Ensembl
GRCm38.p6 Ensembl9110,113,078 - 110,117,431 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197928   ⟹   ENSMUSP00000142549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,388 - 109,946,898 (-)Ensembl
GRCm38.p6 Ensembl9110,084,320 - 110,117,830 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,944,559 - 109,946,453 (-)Ensembl
GRCm38.p6 Ensembl9110,115,491 - 110,117,385 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,389 - 109,939,063 (-)Ensembl
GRCm38.p6 Ensembl9110,084,321 - 110,109,995 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198425   ⟹   ENSMUSP00000142659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,388 - 109,946,490 (-)Ensembl
GRCm38.p6 Ensembl9110,084,320 - 110,117,422 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198443   ⟹   ENSMUSP00000142836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,922,028 - 109,930,107 (-)Ensembl
GRCm38.p6 Ensembl9110,092,960 - 110,101,039 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,944,490 - 109,946,176 (-)Ensembl
GRCm38.p6 Ensembl9110,115,422 - 110,117,108 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199332   ⟹   ENSMUSP00000142952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,389 - 109,914,059 (-)Ensembl
GRCm38.p6 Ensembl9110,084,321 - 110,084,991 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199529   ⟹   ENSMUSP00000142489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,388 - 109,946,501 (-)Ensembl
GRCm38.p6 Ensembl9110,084,320 - 110,117,433 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199693   ⟹   ENSMUSP00000143272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,389 - 109,914,118 (-)Ensembl
GRCm38.p6 Ensembl9110,084,321 - 110,085,050 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,944,182 - 109,946,700 (-)Ensembl
GRCm38.p6 Ensembl9110,115,114 - 110,117,632 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199835   ⟹   ENSMUSP00000142636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,922,136 - 109,945,852 (-)Ensembl
GRCm38.p6 Ensembl9110,093,068 - 110,116,784 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,918,869 - 109,939,664 (-)Ensembl
GRCm38.p6 Ensembl9110,089,801 - 110,110,596 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200066   ⟹   ENSMUSP00000143371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,391 - 109,946,403 (-)Ensembl
GRCm38.p6 Ensembl9110,084,323 - 110,117,335 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200476   ⟹   ENSMUSP00000143700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,927,905 - 109,946,155 (-)Ensembl
GRCm38.p6 Ensembl9110,098,837 - 110,117,087 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200593   ⟹   ENSMUSP00000143607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,913,586 - 109,914,583 (-)Ensembl
GRCm38.p6 Ensembl9110,084,518 - 110,085,515 (-)Ensembl
RefSeq Acc Id: NM_001252682   ⟹   NP_001239611
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,387 - 109,946,684 (-)NCBI
GRCm389110,084,319 - 110,117,616 (-)ENTREZGENE
Celera9109,812,518 - 109,845,881 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252683   ⟹   NP_001239612
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,387 - 109,930,155 (-)NCBI
GRCm389110,084,319 - 110,101,087 (-)NCBI
Celera9109,812,518 - 109,845,881 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133347   ⟹   NP_579925
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,387 - 109,944,650 (-)NCBI
GRCm389110,084,319 - 110,115,582 (-)NCBI
MGSCv379109,986,824 - 110,018,086 (-)RGD
Celera9109,812,518 - 109,845,881 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512298   ⟹   XP_006512361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,514 (-)NCBI
GRCm389110,084,325 - 110,117,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512299   ⟹   XP_006512362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
GRCm389110,084,325 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512300   ⟹   XP_006512363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,409 (-)NCBI
GRCm389110,084,325 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512301   ⟹   XP_006512364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
GRCm389110,084,320 - 110,117,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512303   ⟹   XP_006512366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
GRCm389110,084,320 - 110,117,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512304   ⟹   XP_006512367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,409 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512305   ⟹   XP_006512368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,728 (-)NCBI
GRCm389110,084,320 - 110,117,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512310   ⟹   XP_006512373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
GRCm389110,084,320 - 110,117,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313614   ⟹   XP_017169103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313615   ⟹   XP_017169104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244641   ⟹   XP_030100501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244642   ⟹   XP_030100502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,659 (-)NCBI
GRCm389110,084,320 - 110,117,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244643   ⟹   XP_030100503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,409 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244644   ⟹   XP_030100504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
GRCm389110,084,320 - 110,117,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244646   ⟹   XP_030100506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244647   ⟹   XP_030100507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,409 (-)NCBI
GRCm389110,084,320 - 110,117,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155321   ⟹   XP_036011214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155322   ⟹   XP_036011215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155323   ⟹   XP_036011216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155325   ⟹   XP_036011218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155326   ⟹   XP_036011219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155327   ⟹   XP_036011220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,435 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155328   ⟹   XP_036011221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155329   ⟹   XP_036011222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,913,388 - 109,946,703 (-)NCBI
Sequence:
1 to 30 of 51 rows
Protein RefSeqs NP_001239611 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239612 (Get FASTA)   NCBI Sequence Viewer  
  NP_579925 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512361 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512362 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512363 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512364 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512366 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512367 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512368 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512373 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169103 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169104 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100501 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100502 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100503 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100504 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100506 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100507 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011214 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011215 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011216 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011218 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011219 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011220 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011221 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011222 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH04082 (Get FASTA)   NCBI Sequence Viewer  
  AAH16202 (Get FASTA)   NCBI Sequence Viewer  
  BAB32789 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 51 rows
1 to 5 of 44 rows
1 to 5 of 44 rows
RefSeq Acc Id: NP_579925   ⟸   NM_133347
- Peptide Label: isoform 2
- UniProtKB: Q91WA7 (UniProtKB/Swiss-Prot),   Q3UJS4 (UniProtKB/Swiss-Prot),   Q3UFA0 (UniProtKB/Swiss-Prot),   Q3U4Z4 (UniProtKB/Swiss-Prot),   Q99KN7 (UniProtKB/Swiss-Prot),   Q99PU8 (UniProtKB/Swiss-Prot),   Q80TP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239611   ⟸   NM_001252682
- Peptide Label: isoform 1
- UniProtKB: Q80TP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239612   ⟸   NM_001252683
- Peptide Label: isoform 3
- UniProtKB: Q99PU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512361   ⟸   XM_006512298
- Peptide Label: isoform X1
- UniProtKB: Q91WA7 (UniProtKB/Swiss-Prot),   Q3UJS4 (UniProtKB/Swiss-Prot),   Q3UFA0 (UniProtKB/Swiss-Prot),   Q3U4Z4 (UniProtKB/Swiss-Prot),   Q99KN7 (UniProtKB/Swiss-Prot),   Q99PU8 (UniProtKB/Swiss-Prot),   Q80TP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512373   ⟸   XM_006512310
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JGL8 (UniProtKB/TrEMBL),   Q80TP6 (UniProtKB/TrEMBL)
- Sequence:
DRBM   Helicase ATP-binding   Helicase C-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-Q99PU8-F1-model_v2 AlphaFold Q99PU8 1-1217 view protein structure

RGD ID:6848395
Promoter ID:MM_ACW:52114
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:DHX30.PSEP07,   DHX30.SSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369109,986,846 - 109,987,346 (-)MPROMDB
RGD ID:6844410
Promoter ID:MM_KWN:58891
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000086434
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369109,989,486 - 109,990,647 (-)MPROMDB
RGD ID:6844409
Promoter ID:MM_KWN:58892
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000086433
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369109,993,841 - 109,994,707 (-)MPROMDB
RGD ID:6844406
Promoter ID:MM_KWN:58893
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000086425
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,003,219 - 110,003,719 (-)MPROMDB
RGD ID:6844425
Promoter ID:MM_KWN:58896
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000084965,   OTTMUST00000086417,   OTTMUST00000086419,   OTTMUST00000086420,   OTTMUST00000086421,   OTTMUST00000086422,   OTTMUST00000086426,   OTTMUST00000086427,   OTTMUST00000086428,   OTTMUST00000086429,   OTTMUST00000086430,   OTTMUST00000086431,   UC009RTJ.1,   UC009RTL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,019,431 - 110,020,292 (-)MPROMDB
RGD ID:8670982
Promoter ID:EPDNEW_M13522
Type:multiple initiation site
Name:Dhx30_1
Description:Mus musculus DEAH (Asp-Glu-Ala-His) box polypeptide 30 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13523  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,101,035 - 110,101,095EPDNEW
RGD ID:8670984
Promoter ID:EPDNEW_M13523
Type:initiation region
Name:Dhx30_2
Description:Mus musculus DEAH (Asp-Glu-Ala-His) box polypeptide 30 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13522  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,117,385 - 110,117,445EPDNEW


1 to 40 of 66 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000032480 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000062368 ENTREZGENE
  ENSMUST00000062368.13 UniProtKB/Swiss-Prot
  ENSMUST00000111991 ENTREZGENE
  ENSMUST00000111991.9 UniProtKB/Swiss-Prot
  ENSMUST00000165596 ENTREZGENE
  ENSMUST00000165596.8 UniProtKB/Swiss-Prot
  ENSMUST00000196171 ENTREZGENE
  ENSMUST00000197928 ENTREZGENE
  ENSMUST00000197928.5 UniProtKB/Swiss-Prot
  ENSMUST00000198425 ENTREZGENE
  ENSMUST00000198425.5 UniProtKB/Swiss-Prot
  ENSMUST00000199529 ENTREZGENE
  ENSMUST00000199529.5 UniProtKB/Swiss-Prot
  ENSMUST00000200066 ENTREZGENE
  ENSMUST00000200066.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.120.1080 UniProtKB/Swiss-Prot
  3.30.160.20 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot
  DNA/RNA_helicase_DEAH_CS UniProtKB/Swiss-Prot
  DUF1605 UniProtKB/Swiss-Prot
  Helicase-assoc_dom UniProtKB/Swiss-Prot
  Helicase_ATP-bd UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report mmu:72831 UniProtKB/Swiss-Prot
MGD MGI:1920081 ENTREZGENE
NCBI Gene 72831 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/Swiss-Prot
  ATP-DEPENDENT RNA HELICASE DHX30 UniProtKB/Swiss-Prot
Pfam DEAD UniProtKB/Swiss-Prot
  HA2_C UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  OB_NTP_bind UniProtKB/Swiss-Prot
PhenoGen Dhx30 PhenoGen
PROSITE DEAH_ATP_HELICASE UniProtKB/Swiss-Prot
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot
  HELICASE_CTER UniProtKB/Swiss-Prot
SMART DEXDc UniProtKB/Swiss-Prot
1 to 40 of 66 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Dhx30  DExH-box helicase 30  Dhx30  DEAH (Asp-Glu-Ala-His) box polypeptide 30  Symbol and/or name change 5135510 APPROVED