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Gene: ACTR1B (actin related protein 1B) Homo sapiens

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Symbol:

ACTR1B

Name:

actin related protein 1B

RGD ID:

1316546

HGNC Page

HGNC:168

Description:

Predicted to enable ATP binding activity. Located in centrosome and cytoplasm.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

actin-related protein 1B; ARP1 actin related protein 1 homolog B; ARP1 actin-related protein 1 homolog B, centractin beta; ARP1 actin-related protein 1 homolog B, centractin beta (yeast); ARP1B; beta-centractin; centractin beta; CTRN2; PC3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Actr1b (ARP1 actin-related protein 1B, centractin beta)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Actr1b (actin related protein 1B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Actr1b (actin related protein 1B)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	ACTR1B (actin related protein 1B)	NCBI	Ortholog
Canis lupus familiaris (dog):	ACTR1B (actin related protein 1B)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Actr1b (actin related protein 1B)	NCBI	Ortholog
Sus scrofa (pig):	ACTR1B (actin related protein 1B)	HGNC	Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	ACTR1B (actin related protein 1B)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Actr1b (actin related protein 1B)	NCBI	Ortholog
Other homologs ²
Mus musculus (house mouse):	Actr1a (ARP1 actin-related protein 1A, centractin alpha)	HGNC	OrthoDB, OrthoMCL
Rattus norvegicus (Norway rat):	Actr1a (actin related protein 1A)	HGNC	OrthoDB
Canis lupus familiaris (dog):	ACTR1A (actin related protein 1A)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Actr1b (actin related protein 1B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Actr1b (ARP1 actin-related protein 1B, centractin beta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	actr1 (actin related protein 1, centractin)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	ARP1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Arp1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	arp-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	97,655,939 - 97,664,044 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	97,655,939 - 97,664,044 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	98,272,402 - 98,280,507 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	97,638,863 - 97,646,816 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	97,730,948 - 97,738,902	NCBI
Celera	2	92,476,403 - 92,484,541 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	92,038,099 - 92,046,237 (-)	NCBI		HuRef
CHM1_1	2	98,276,759 - 98,284,918 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	98,114,160 - 98,122,265 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Human	Duane retraction syndrome		IAGP	(Homo sapiens) and (Homo sapiens)	8554872	ClinVar Annotator: match by term: Duane retraction syndrome	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Human	1,2-dimethylhydrazine	increases expression	ISO	Actr1b (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of ACTR1B mRNA	CTD	PMID:22206623
ACTR1B	Human	17beta-estradiol	increases expression	ISO	Actr1b (Mus musculus)	6480464	Estradiol results in increased expression of ACTR1B mRNA	CTD	PMID:39298647
ACTR1B	Human	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Actr1b (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ACTR1B mRNA	CTD	PMID:21570461
ACTR1B	Human	3,4-methylenedioxymethamphetamine	increases expression	ISO	Actr1b (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of ACTR1B mRNA	CTD	PMID:20188158
ACTR1B	Human	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol S co-treated with Fulvestrant] results in increased methylation of ACTR1B gene	CTD	PMID:31601247
ACTR1B	Human	4,4'-sulfonyldiphenol	increases methylation	EXP		6480464	bisphenol S results in increased methylation of ACTR1B gene	CTD	PMID:31601247
ACTR1B	Human	6-propyl-2-thiouracil	increases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of ACTR1B mRNA	CTD	PMID:30047161
ACTR1B	Human	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of ACTR1B mRNA	CTD	PMID:32763439
ACTR1B	Human	amitrole	increases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Amitrole results in increased expression of ACTR1B mRNA	CTD	PMID:30047161
ACTR1B	Human	arsane	multiple interactions	EXP		6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ACTR1B mRNA	CTD	PMID:39836092
ACTR1B	Human	arsenic atom	multiple interactions	EXP		6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ACTR1B mRNA	CTD	PMID:39836092
ACTR1B	Human	arsenous acid	decreases expression	EXP		6480464	Arsenic Trioxide results in decreased expression of ACTR1B mRNA	CTD	PMID:27829220
ACTR1B	Human	atrazine	increases expression	EXP		6480464	Atrazine results in increased expression of ACTR1B mRNA	CTD	PMID:22378314
ACTR1B	Human	atrazine	decreases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Atrazine results in decreased expression of ACTR1B mRNA	CTD	PMID:36841081
ACTR1B	Human	bis(2-ethylhexyl) phthalate	decreases expression	EXP		6480464	Diethylhexyl Phthalate results in decreased expression of ACTR1B protein	CTD	PMID:31163220
ACTR1B	Human	bisphenol A	increases expression	ISO	Actr1b (Rattus norvegicus)	6480464	bisphenol A results in increased expression of ACTR1B mRNA	CTD	PMID:25181051
ACTR1B	Human	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ACTR1B protein	CTD	PMID:33376534
ACTR1B	Human	cadmium atom	decreases expression	ISO	Actr1b (Mus musculus)	6480464	Cadmium results in decreased expression of ACTR1B mRNA	CTD	PMID:24067728
ACTR1B	Human	carbon nanotube	increases expression	ISO	Actr1b (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
ACTR1B	Human	chromium(6+)	multiple interactions	EXP		6480464	[zinc chromate results in increased abundance of chromium hexavalent ion] which results in decreased expression of ACTR1B mRNA	CTD	PMID:38479592
ACTR1B	Human	clobetasol	increases expression	ISO	Actr1b (Mus musculus)	6480464	Clobetasol results in increased expression of ACTR1B mRNA	CTD	PMID:27462272
ACTR1B	Human	clofibrate	decreases expression	ISO	Actr1b (Mus musculus)	6480464	Clofibrate results in decreased expression of ACTR1B mRNA	CTD	PMID:17585979
ACTR1B	Human	copper(II) sulfate	decreases expression	EXP		6480464	Copper Sulfate results in decreased expression of ACTR1B mRNA	CTD	PMID:19549813
ACTR1B	Human	diarsenic trioxide	decreases expression	EXP		6480464	Arsenic Trioxide results in decreased expression of ACTR1B mRNA	CTD	PMID:27829220
ACTR1B	Human	Dibutyl phosphate	affects expression	EXP		6480464	di-n-butylphosphoric acid affects the expression of ACTR1B mRNA	CTD	PMID:37042841
ACTR1B	Human	elemental selenium	increases expression	EXP		6480464	Selenium results in increased expression of ACTR1B mRNA	CTD	PMID:19244175
ACTR1B	Human	fipronil	decreases expression	ISO	Actr1b (Rattus norvegicus)	6480464	fipronil results in decreased expression of ACTR1B mRNA	CTD	PMID:23962444
ACTR1B	Human	flutamide	decreases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Flutamide results in decreased expression of ACTR1B mRNA	CTD	PMID:24793618
ACTR1B	Human	fulvestrant	multiple interactions	EXP		6480464	[bisphenol S co-treated with Fulvestrant] results in increased methylation of ACTR1B gene	CTD	PMID:31601247
ACTR1B	Human	gentamycin	increases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Gentamicins results in increased expression of ACTR1B mRNA	CTD	PMID:33387578
ACTR1B	Human	ivermectin	decreases expression	EXP		6480464	Ivermectin results in decreased expression of ACTR1B protein	CTD	PMID:32959892
ACTR1B	Human	naphthalene	decreases expression	ISO	Actr1b (Mus musculus)	6480464	naphthalene results in decreased expression of ACTR1B protein	CTD	PMID:19438287
ACTR1B	Human	nitrates	multiple interactions	ISO	Actr1b (Mus musculus)	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of ACTR1B mRNA	CTD	PMID:35964746
ACTR1B	Human	paracetamol	affects expression	ISO	Actr1b (Mus musculus)	6480464	Acetaminophen affects the expression of ACTR1B mRNA	CTD	PMID:17562736
ACTR1B	Human	quercetin	increases expression	EXP		6480464	Quercetin results in increased expression of ACTR1B mRNA	CTD	PMID:21632981
ACTR1B	Human	selenium atom	increases expression	EXP		6480464	Selenium results in increased expression of ACTR1B mRNA	CTD	PMID:19244175
ACTR1B	Human	sodium arsenate	decreases expression	ISO	Actr1b (Mus musculus)	6480464	sodium arsenate results in decreased expression of ACTR1B mRNA	CTD	PMID:21795629
ACTR1B	Human	sodium arsenite	decreases expression	EXP		6480464	sodium arsenite results in decreased expression of ACTR1B mRNA	CTD	PMID:38568856
ACTR1B	Human	sodium arsenite	multiple interactions	EXP		6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ACTR1B mRNA	CTD	PMID:39836092
ACTR1B	Human	Soman	increases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Soman results in increased expression of ACTR1B mRNA	CTD	PMID:19281266
ACTR1B	Human	sulfadimethoxine	increases expression	ISO	Actr1b (Rattus norvegicus)	6480464	Sulfadimethoxine results in increased expression of ACTR1B mRNA	CTD	PMID:30047161
ACTR1B	Human	tamoxifen	decreases expression	EXP		6480464	Tamoxifen results in decreased expression of ACTR1B mRNA	CTD	PMID:15604281
ACTR1B	Human	temozolomide	decreases expression	EXP		6480464	Temozolomide results in decreased expression of ACTR1B mRNA	CTD	PMID:31758290
ACTR1B	Human	titanium dioxide	decreases methylation	ISO	Actr1b (Mus musculus)	6480464	titanium dioxide results in decreased methylation of ACTR1B gene	CTD	PMID:35295148
ACTR1B	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of ACTR1B mRNA	CTD	PMID:37042841
ACTR1B	Human	troglitazone	decreases expression	ISO	Actr1b (Mus musculus)	6480464	troglitazone results in decreased expression of ACTR1B mRNA	CTD	PMID:28973697
ACTR1B	Human	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of ACTR1B mRNA	CTD	PMID:29154799
ACTR1B	Human	vinclozolin	decreases expression	ISO	Actr1b (Rattus norvegicus)	6480464	vinclozolin results in decreased expression of ACTR1B mRNA	CTD	PMID:23034163
ACTR1B	Human	vitamin E	increases expression	EXP		6480464	Vitamin E results in increased expression of ACTR1B mRNA	CTD	PMID:19244175

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Human	centrosome	located_in	IEA	UniProtKB-SubCell:SL-0048	150520179		UniProt	GO_REF:0000044
ACTR1B	Human	centrosome	located_in	IDA		150520179	PMID:21399614	UniProt	PMID:21399614
ACTR1B	Human	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
ACTR1B	Human	cytoplasm	located_in	IDA		150520179		LIFEdb	GO_REF:0000054
ACTR1B	Human	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	150520179		UniProt	GO_REF:0000043
ACTR1B	Human	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	150520179		UniProt	GO_REF:0000044
ACTR1B	Human	cytosol	located_in	TAS		150520179		Reactome	Reactome:R-HSA-2213248
ACTR1B	Human	dynactin complex	part_of	IBA	PANTHER:PTN000233666 more ...	150520179		GO_Central	GO_REF:0000033
ACTR1B	Human	dynactin complex	part_of	TAS		150520179	PMID:7696711	PINC	PMID:7696711
ACTR1B	Human	extracellular exosome	located_in	HDA		150520179	PMID:23533145	UniProt	PMID:23533145
ACTR1B	Human	extracellular region	located_in	TAS		150520179		Reactome	Reactome:R-HSA-6798748 and Reactome:R-HSA-6800434
ACTR1B	Human	ficolin-1-rich granule lumen	located_in	TAS		150520179		Reactome	Reactome:R-HSA-6800434
ACTR1B	Human	membrane	located_in	HDA		150520179	PMID:19946888	UniProt	PMID:19946888
ACTR1B	Human	secretory granule lumen	located_in	TAS		150520179		Reactome	Reactome:R-HSA-6798748

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Human	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	150520179		UniProt	GO_REF:0000043
ACTR1B	Human	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	150520179		UniProt	GO_REF:0000043
ACTR1B	Human	protein binding	enables	IPI	UniProtKB:Q14203	150520179	PMID:26638075 and PMID:33961781	IntAct	PMID:26638075 and PMID:33961781
ACTR1B	Human	protein binding	enables	IPI	UniProtKB:Q14203 and UniProtKB:Q9QZB7	150520179	PMID:12857853	IntAct	PMID:12857853
ACTR1B	Human	protein binding	enables	IPI	UniProtKB:P42858	150520179	PMID:32814053	IntAct	PMID:32814053

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Human	Duane anomaly		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Duane anomaly	ClinVar	PMID:25741868
ACTR1B	Human	Duane anomaly		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Duane anomaly	ClinVar	PMID:25741868

#	Reference Title	Reference Citation
1.	GOAs Human GO annotations	GOA_HUMAN data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:7696711	PMID:9436979	PMID:10343100	PMID:11256614	PMID:12477932	PMID:12857853	PMID:15489334	PMID:15815621	PMID:16169070	PMID:17619203	PMID:19946888	PMID:19996280
PMID:20360068	PMID:21081503	PMID:21145461	PMID:21399614	PMID:21832049	PMID:21873635	PMID:21900206	PMID:22863883	PMID:22939629	PMID:23376485	PMID:23533145	PMID:24705354
PMID:26186194	PMID:26344197	PMID:26485645	PMID:26496610	PMID:26638075	PMID:26777405	PMID:27173435	PMID:27432908	PMID:27591049	PMID:28514442	PMID:28524877	PMID:28718761
PMID:29467282	PMID:29507755	PMID:29511261	PMID:29568061	PMID:29845934	PMID:30890647	PMID:31010829	PMID:31091453	PMID:31586073	PMID:32176739	PMID:32707033	PMID:32814053
PMID:33961781	PMID:34349018	PMID:34709727	PMID:35016035	PMID:35063084	PMID:35256949	PMID:35271311	PMID:35384245	PMID:35831314	PMID:35850772	PMID:35944360	PMID:36215168
PMID:36369321	PMID:36543142	PMID:36897256	PMID:37827155	PMID:38334954	PMID:39358380

ACTR1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	97,655,939 - 97,664,044 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	97,655,939 - 97,664,044 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	98,272,402 - 98,280,507 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	97,638,863 - 97,646,816 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	97,730,948 - 97,738,902	NCBI
Celera	2	92,476,403 - 92,484,541 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	92,038,099 - 92,046,237 (-)	NCBI		HuRef
CHM1_1	2	98,276,759 - 98,284,918 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	98,114,160 - 98,122,265 (-)	NCBI		T2T-CHM13v2.0

Actr1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	36,737,195 - 36,749,051 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	36,737,195 - 36,753,503 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	36,698,114 - 36,710,017 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	36,698,114 - 36,714,422 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	36,756,047 - 36,766,770 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	36,643,748 - 36,654,471 (-)	NCBI		MGSCv36	mm8
Celera	1	36,485,914 - 36,496,820 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.38	NCBI

Actr1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,424,677 - 46,434,341 (-)	NCBI		GRCr8
mRatBN7.2	9	38,928,819 - 38,938,483 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,929,912 - 38,938,507 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	47,431,851 - 47,441,470 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,547,613 - 52,557,279 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,829,511 - 50,839,177 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,267,053 - 43,276,717 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,267,057 - 43,276,685 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	42,919,561 - 42,929,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	35,632,318 - 35,641,982 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	35,635,671 - 35,643,387 (-)	NCBI
Celera	9	36,695,198 - 36,704,862 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

Actr1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,326,096 - 4,336,441 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	4,328,895 - 4,336,441 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACTR1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	30,791,904 - 30,800,089 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	30,794,764 - 30,802,877 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	101,659,316 - 101,667,402 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	98,555,298 - 98,563,389 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	98,555,298 - 98,563,389 (-)	Ensembl	panpan1.1		panPan2

ACTR1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	44,964,979 - 44,972,607 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	44,899,103 - 44,972,613 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	44,891,846 - 44,899,863 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	45,840,987 - 45,849,007 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	45,841,006 - 45,850,553 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	45,552,752 - 45,560,767 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	45,838,842 - 45,846,851 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	46,022,193 - 46,030,210 (+)	NCBI		UU_Cfam_GSD_1.0

Actr1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,675,139 - 83,682,983 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	928,073 - 936,043 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	928,075 - 935,969 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTR1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	56,610,304 - 56,620,164 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	56,610,356 - 56,619,171 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	59,388,416 - 59,395,936 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACTR1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	1,342,290 - 1,350,496 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	1,342,100 - 1,350,197 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	168,783,466 - 168,791,549 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Actr1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,844,063 - 2,852,290 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	2,844,295 - 2,851,805 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in ACTR1B
34 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 2q11.2(chr2:97634165-97841153)x3	copy number gain	See cases [RCV000052667]	Chr2:97634165..97841153 [GRCh38] Chr2:98250628..98457616 [GRCh37] Chr2:97617060..97824048 [NCBI36] Chr2:2q11.2	uncertain significance
GRCh38/hg38 2q11.1-12.1(chr2:94817406-103252396)x3	copy number gain	See cases [RCV000052946]	Chr2:94817406..103252396 [GRCh38] Chr2:95618109..103868854 [GRCh37] Chr2:94846878..103235286 [NCBI36] Chr2:2q11.1-12.1	pathogenic
GRCh38/hg38 2p11.2-q11.2(chr2:91443218-102334856)x3	copy number gain	See cases [RCV000052945]	Chr2:91443218..102334856 [GRCh38] Chr2:91617683..102951316 [GRCh37] Chr2:90981410..102317748 [NCBI36] Chr2:2p11.2-q11.2	pathogenic
NM_005735.3(ACTR1B):c.616C>T (p.His206Tyr)	single nucleotide variant	Malignant melanoma [RCV000060635]	Chr2:97658468 [GRCh38] Chr2:98274931 [GRCh37] Chr2:97641363 [NCBI36] Chr2:2q11.2	not provided
GRCh38/hg38 2q11.1-11.2(chr2:95337458-99072953)x3	copy number gain	See cases [RCV000138012]	Chr2:95337458..99072953 [GRCh38] Chr2:96003206..99689416 [GRCh37] Chr2:95366933..99055848 [NCBI36] Chr2:2q11.1-11.2	uncertain significance
GRCh38/hg38 2q11.1-13(chr2:94678532-110602409)x3	copy number gain	See cases [RCV000141075]	Chr2:94678532..110602409 [GRCh38] Chr2:95344257..111359986 [GRCh37] Chr2:94707984..111076455 [NCBI36] Chr2:2q11.1-13	pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3	copy number gain	not provided [RCV000752802]	Chr2:14238..243048760 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3	copy number gain	not provided [RCV000752804]	Chr2:15672..243101834 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2q11.1-12.3(chr2:95529039-108518266)	copy number gain	See cases [RCV000449270]	Chr2:95529039..108518266 [GRCh37] Chr2:2q11.1-12.3	pathogenic
GRCh37/hg19 2q11.1-13(chr2:95327499-111370025)x4	copy number gain	See cases [RCV000446842]	Chr2:95327499..111370025 [GRCh37] Chr2:2q11.1-13	pathogenic
GRCh37/hg19 2q11.2(chr2:98263858-98274890)x3	copy number gain	See cases [RCV000446435]	Chr2:98263858..98274890 [GRCh37] Chr2:2q11.2	benign
GRCh37/hg19 2q11.2(chr2:98264419-98274890)x3	copy number gain	See cases [RCV000448745]	Chr2:98264419..98274890 [GRCh37] Chr2:2q11.2	likely benign
GRCh37/hg19 2q11.1-11.2(chr2:95691600-100587394)	copy number gain	See cases [RCV000447723]	Chr2:95691600..100587394 [GRCh37] Chr2:2q11.1-11.2	pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)	copy number gain	See cases [RCV000512056]	Chr2:12771..242783384 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3	copy number gain	See cases [RCV000511212]	Chr2:12771..242783384 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
Single allele	deletion	not provided [RCV000714264]	Chr2:40608411..146900718 [GRCh37] Chr2:2p22.1-q22.3	likely pathogenic
GRCh37/hg19 2q11.1-12.2(chr2:95518497-107186127)	copy number gain	See cases [RCV000511158]	Chr2:95518497..107186127 [GRCh37] Chr2:2q11.1-12.2	uncertain significance
NM_005735.4(ACTR1B):c.371C>T (p.Ala124Val)	single nucleotide variant	not specified [RCV004329801]	Chr2:97658948 [GRCh38] Chr2:98275411 [GRCh37] Chr2:2q11.2	uncertain significance
GRCh37/hg19 2q11.2(chr2:98021533-98274335)x3	copy number gain	not provided [RCV000659236]	Chr2:98021533..98274335 [GRCh37] Chr2:2q11.2	likely benign
GRCh37/hg19 2q11.1-13(chr2:96353030-114045463)x3	copy number gain	not provided [RCV000682168]	Chr2:96353030..114045463 [GRCh37] Chr2:2q11.1-13	pathogenic
GRCh38/hg38 2q11.2(chr2:97422165-98203456)x3	copy number gain	See cases [RCV000143678]	Chr2:97422165..98203456 [GRCh38] Chr2:98017406..98819919 [GRCh37] Chr2:97383545..98186351 [NCBI36] Chr2:2q11.2	likely benign\|uncertain significance
GRCh37/hg19 2q11.2(chr2:98262523-98274890)x3	copy number gain	See cases [RCV000446022]	Chr2:98262523..98274890 [GRCh37] Chr2:2q11.2	benign
GRCh37/hg19 2q11.1-11.2(chr2:95341388-100340514)x3	copy number gain	not provided [RCV002473932]	Chr2:95341388..100340514 [GRCh37] Chr2:2q11.1-11.2	likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373)	copy number gain	Mosaic trisomy 2 [RCV002280628]	Chr2:1..243199373 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2p25.1-q13(chr2:11504318-111365996)x1	copy number loss	See cases [RCV002287563]	Chr2:11504318..111365996 [GRCh37] Chr2:2p25.1-q13	pathogenic
NM_005735.4(ACTR1B):c.136C>T (p.Arg46Trp)	single nucleotide variant	not specified [RCV004130997]	Chr2:97660624 [GRCh38] Chr2:98277087 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.779A>C (p.Glu260Ala)	single nucleotide variant	not specified [RCV004134995]	Chr2:97658089 [GRCh38] Chr2:98274552 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.584G>A (p.Arg195Gln)	single nucleotide variant	not specified [RCV004089670]	Chr2:97658500 [GRCh38] Chr2:98274963 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.992C>T (p.Ser331Leu)	single nucleotide variant	not specified [RCV004203970]	Chr2:97657188 [GRCh38] Chr2:98273651 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.707C>T (p.Thr236Met)	single nucleotide variant	not specified [RCV004112631]	Chr2:97658267 [GRCh38] Chr2:98274730 [GRCh37] Chr2:2q11.2	uncertain significance
GRCh37/hg19 2q11.2(chr2:98148091-98274527)x3	copy number gain	not provided [RCV000740530]	Chr2:98148091..98274527 [GRCh37] Chr2:2q11.2	benign
GRCh37/hg19 2q11.2(chr2:98261636-98407168)x3	copy number gain	not provided [RCV000740532]	Chr2:98261636..98407168 [GRCh37] Chr2:2q11.2	benign
NM_005735.4(ACTR1B):c.998C>T (p.Pro333Leu)	single nucleotide variant	not specified [RCV004283941]	Chr2:97657182 [GRCh38] Chr2:98273645 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.562C>T (p.Arg188Cys)	single nucleotide variant	not specified [RCV004135099]	Chr2:97658522 [GRCh38] Chr2:98274985 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.59T>C (p.Val20Ala)	single nucleotide variant	not specified [RCV004269356]	Chr2:97661936 [GRCh38] Chr2:98278399 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.962T>C (p.Leu321Pro)	single nucleotide variant	not specified [RCV004269550]	Chr2:97657473 [GRCh38] Chr2:98273936 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.536C>G (p.Ser179Cys)	single nucleotide variant	not specified [RCV004337789]	Chr2:97658548 [GRCh38] Chr2:98275011 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.319C>A (p.Pro107Thr)	single nucleotide variant	not specified [RCV004362223]	Chr2:97659000 [GRCh38] Chr2:98275463 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.277G>A (p.Val93Ile)	single nucleotide variant	not specified [RCV004338578]	Chr2:97659390 [GRCh38] Chr2:98275853 [GRCh37] Chr2:2q11.2	uncertain significance
GRCh37/hg19 2q11.2(chr2:98165095-98974536)x3	copy number gain	not provided [RCV003484072]	Chr2:98165095..98974536 [GRCh37] Chr2:2q11.2	uncertain significance
GRCh37/hg19 2q11.1-11.2(chr2:95773428-102550061)x3	copy number gain	not provided [RCV003484069]	Chr2:95773428..102550061 [GRCh37] Chr2:2q11.1-11.2	likely pathogenic
GRCh37/hg19 2q11.1-11.2(chr2:96732520-99142320)x3	copy number gain	not provided [RCV003484071]	Chr2:96732520..99142320 [GRCh37] Chr2:2q11.1-11.2	uncertain significance
NM_005735.4(ACTR1B):c.504G>A (p.Val168=)	single nucleotide variant	not provided [RCV003436056]	Chr2:97658580 [GRCh38] Chr2:98275043 [GRCh37] Chr2:2q11.2	likely benign
NM_005735.4(ACTR1B):c.333G>A (p.Thr111=)	single nucleotide variant	not provided [RCV003429194]	Chr2:97658986 [GRCh38] Chr2:98275449 [GRCh37] Chr2:2q11.2	likely benign
NM_005735.4(ACTR1B):c.1006C>G (p.Arg336Gly)	single nucleotide variant	Duane retraction syndrome [RCV003883435]	Chr2:97657174 [GRCh38] Chr2:98273637 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.633T>A (p.Phe211Leu)	single nucleotide variant	Duane retraction syndrome [RCV003883436]\|not specified [RCV004887742]	Chr2:97658451 [GRCh38] Chr2:98274914 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.232G>A (p.Gly78Ser)	single nucleotide variant	not specified [RCV004433746]	Chr2:97659435 [GRCh38] Chr2:98275898 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.574C>T (p.Arg192Cys)	single nucleotide variant	not specified [RCV004433767]	Chr2:97658510 [GRCh38] Chr2:98274973 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.769C>T (p.Arg257Trp)	single nucleotide variant	not specified [RCV004433779]	Chr2:97658099 [GRCh38] Chr2:98274562 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.1088A>G (p.Tyr363Cys)	single nucleotide variant	not specified [RCV004433737]	Chr2:97656901 [GRCh38] Chr2:98273364 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.559G>A (p.Gly187Ser)	single nucleotide variant	not specified [RCV004433757]	Chr2:97658525 [GRCh38] Chr2:98274988 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.596G>A (p.Arg199His)	single nucleotide variant	not specified [RCV004433771]	Chr2:97658488 [GRCh38] Chr2:98274951 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.568G>A (p.Val190Ile)	single nucleotide variant	not specified [RCV004433762]	Chr2:97658516 [GRCh38] Chr2:98274979 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.341C>T (p.Pro114Leu)	single nucleotide variant	not specified [RCV004433749]	Chr2:97658978 [GRCh38] Chr2:98275441 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.625G>C (p.Ala209Pro)	single nucleotide variant	not specified [RCV004433775]	Chr2:97658459 [GRCh38] Chr2:98274922 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.875G>A (p.Arg292Gln)	single nucleotide variant	not specified [RCV004609919]	Chr2:97657993 [GRCh38] Chr2:98274456 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.235G>A (p.Val79Met)	single nucleotide variant	not specified [RCV004604918]	Chr2:97659432 [GRCh38] Chr2:98275895 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.172A>G (p.Ile58Val)	single nucleotide variant	not specified [RCV004898250]	Chr2:97660588 [GRCh38] Chr2:98277051 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.805G>A (p.Gly269Arg)	single nucleotide variant	not specified [RCV004898272]	Chr2:97658063 [GRCh38] Chr2:98274526 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.563G>A (p.Arg188His)	single nucleotide variant	not specified [RCV004898236]	Chr2:97658521 [GRCh38] Chr2:98274984 [GRCh37] Chr2:2q11.2	uncertain significance
NM_005735.4(ACTR1B):c.1029C>T (p.Gly343=)	single nucleotide variant	not specified [RCV004898265]	Chr2:97656960 [GRCh38] Chr2:98273423 [GRCh37] Chr2:2q11.2	likely benign

Predicted Target Of

	Summary Value
Count of predictions:	1060
Count of miRNA genes:	651
Interacting mature miRNAs:	742
Transcripts:	ENST00000289228, ENST00000451664, ENST00000460427
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597113141	GWAS1209215_H	bitter alcoholic beverage consumption measurement QTL GWAS1209215 (human)		4e-09	cortical thickness	drink intake measurement (CMO:0000771)	2	97658891	97658892	Human
597028144	GWAS1124218_H	body mass index QTL GWAS1124218 (human)		3e-08	body mass index	body mass index (BMI) (CMO:0000105)	2	97658891	97658892	Human
597225841	GWAS1321915_H	smoking status measurement QTL GWAS1321915 (human)		4e-08	smoking status measurement		2	97658891	97658892	Human
597139261	GWAS1235335_H	neuroimaging measurement QTL GWAS1235335 (human)		1e-18	neuroimaging measurement		2	97658891	97658892	Human
597193715	GWAS1289789_H	cortical thickness QTL GWAS1289789 (human)		3e-13	cortical thickness		2	97658891	97658892	Human
597215637	GWAS1311711_H	smoking status measurement QTL GWAS1311711 (human)		2e-12	smoking status measurement		2	97658891	97658892	Human
597192757	GWAS1288831_H	cortical thickness QTL GWAS1288831 (human)		1e-13	cortical thickness		2	97658891	97658892	Human
597324661	GWAS1420735_H	colorectal cancer QTL GWAS1420735 (human)		7e-12	colorectal cancer		2	97658891	97658892	Human
597206441	GWAS1302515_H	colorectal cancer QTL GWAS1302515 (human)		1e-08	colorectal cancer		2	97658891	97658892	Human
597194346	GWAS1290420_H	cortical thickness QTL GWAS1290420 (human)		7e-10	cortical thickness		2	97658891	97658892	Human
1298432	OSTEAR10_H	Osteoarthritis QTL 10 (human)	2.34	0.0001	Joint/bone inflammation	distal interphalangeal joint osteoarthritis	2	97592766	106657498	Human
596967395	GWAS1086914_H	cortical thickness QTL GWAS1086914 (human)		2e-09	cortical thickness		2	97658891	97658892	Human
597264910	GWAS1360984_H	cortical thickness QTL GWAS1360984 (human)		2e-09	cortical thickness		2	97658891	97658892	Human
597192367	GWAS1288441_H	cortical thickness QTL GWAS1288441 (human)		4e-15	cortical thickness		2	97658891	97658892	Human
597194144	GWAS1290218_H	cortical thickness QTL GWAS1290218 (human)		5e-15	cortical thickness		2	97658891	97658892	Human
597194848	GWAS1290922_H	cortical thickness QTL GWAS1290922 (human)		1e-11	cortical thickness		2	97658891	97658892	Human
597323360	GWAS1419434_H	smoking initiation QTL GWAS1419434 (human)		8e-10	smoking initiation		2	97658891	97658892	Human
406938431	GWAS587407_H	cortical thickness QTL GWAS587407 (human)		5e-10	cortical thickness		2	97658891	97658892	Human
597177959	GWAS1274033_H	body mass index QTL GWAS1274033 (human)		8e-09	body mass index	body mass index (BMI) (CMO:0000105)	2	97658891	97658892	Human
597193927	GWAS1290001_H	cortical thickness QTL GWAS1290001 (human)		3e-14	cortical thickness		2	97658891	97658892	Human

RH103445

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	2	98,278,919 - 98,279,087	UniSTS	GRCh37
Build 36	2	97,645,351 - 97,645,519	RGD	NCBI36
Celera	2	92,482,899 - 92,483,067	RGD
Cytogenetic Map	2	q11.1-q11.2	UniSTS
Cytogenetic Map	2	q11.2	UniSTS
HuRef	2	92,044,595 - 92,044,763	UniSTS
GeneMap99-GB4 RH Map	2	356.23	UniSTS

G59594

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	2	98,272,681 - 98,272,815	UniSTS	GRCh37
Build 36	2	97,639,113 - 97,639,247	RGD	NCBI36
Celera	2	92,476,682 - 92,476,816	RGD
Cytogenetic Map	2	q11.1-q11.2	UniSTS
HuRef	2	92,038,378 - 92,038,512	UniSTS
TNG Radiation Hybrid Map	2	57874.0	UniSTS

WI-19134

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	2	98,272,612 - 98,272,895	UniSTS	GRCh37
Build 36	2	97,639,044 - 97,639,327	RGD	NCBI36
Celera	2	92,476,613 - 92,476,896	RGD
Cytogenetic Map	2	q11.1-q11.2	UniSTS
HuRef	2	92,038,309 - 92,038,592	UniSTS
GeneMap99-GB4 RH Map	2	356.23	UniSTS
Whitehead-RH Map	2	521.6	UniSTS
NCBI RH Map	2	547.5	UniSTS

WI-13619

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	2	98,272,455 - 98,272,585	UniSTS	GRCh37
Build 36	2	97,638,887 - 97,639,017	RGD	NCBI36
Celera	2	92,476,456 - 92,476,586	RGD
Cytogenetic Map	2	q11.1-q11.2	UniSTS
HuRef	2	92,038,152 - 92,038,282	UniSTS
GeneMap99-GB4 RH Map	2	356.12	UniSTS
Whitehead-RH Map	2	489.2	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2439	2788	2253	4974	1726	2351	6	624	1951	465	2270	7306	6472	53	3734	1	852	1744	1617	175	1


RefSeq Transcripts	NM_005735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005263854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017003116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054332905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054332906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054340086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054340087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC017099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC004374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC006372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC010090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC025274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X82207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X82208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000289228 ⟹ ENSP00000289228

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	2	97,655,939 - 97,664,044 (-)	Ensembl

Ensembl Acc Id:

ENST00000451664

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	2	97,657,978 - 97,663,916 (-)	Ensembl

Ensembl Acc Id:

ENST00000460427

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	2	97,658,814 - 97,659,891 (-)	Ensembl

RefSeq Acc Id:

NM_005735 ⟹ NP_005726

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	2	97,655,939 - 97,664,044 (-)	NCBI
GRCh37	2	98,272,402 - 98,280,561 (-)	RGD
Build 36	2	97,638,863 - 97,646,816 (-)	NCBI Archive
Celera	2	92,476,403 - 92,484,541 (-)	RGD
HuRef	2	92,038,099 - 92,046,237 (-)	ENTREZGENE
CHM1_1	2	98,276,759 - 98,284,918 (-)	NCBI
T2T-CHM13v2.0	2	98,114,160 - 98,122,265 (-)	NCBI

Sequence:

show sequence

AGAAAGCCCCGCGGGGCTCGCGTAGGCTGCAGGCTCGGGGAGGGAGGGCAGCGGCGCCGCGTCGGGAGCCGCCGCCGTCCCGGTCCTCCCGCCCGCCCGCCCATCCGGTGCCTCCTGCAGCCCGCCTG
CTGGGCAGGGCCGGCGCGGCCCGGCCATGGAGTCCTACGACATCATCGCCAACCAGCCTGTGGTCATCGACAACGGTTCGGGGGTGATTAAAGCTGGCTTTGCAGGAGACCAGATTCCCAAATACTGT
TTCCCAAACTATGTCGGGCGGCCGAAGCACATGCGGGTGATGGCTGGAGCCCTGGAGGGGGACCTCTTCATCGGACCAAAAGCAGAGGAGCACCGGGGGCTGCTGACCATCCGCTACCCCATGGAGCA
CGGCGTGGTGCGAGACTGGAACGACATGGAACGCATCTGGCAGTACGTCTACTCCAAGGATCAGCTGCAGACCTTCTCGGAGGAGCATCCTGTGCTCCTCACGGAGGCCCCGCTCAACCCGAGTAAGA
ACCGGGAGAAGGCGGCAGAGGTGTTCTTTGAGACCTTCAACGTGCCGGCCCTGTTCATCTCCATGCAGGCTGTGCTCAGTCTGTACGCAACAGGACGCACGACAGGAGTGGTTCTAGACTCAGGGGAC
GGGGTCACTCATGCTGTGCCCATCTATGAGGGCTTTGCCATGCCTCACTCCATCATGCGGGTGGACATTGCCGGCCGCGACGTCTCCCGCTACCTCCGACTCCTGCTGCGCAAGGAAGGGGTTGACTT
CCATACCTCGGCTGAGTTTGAGGTTGTCCGGACAATCAAAGAGCGAGCGTGCTACCTGTCCATCAACCCACAGAAGGATGAGGCTCTGGAGACGGAGAAGGTGCAGTACACGTTGCCAGACGGCAGCA
CGCTTGATGTGGGGCCTGCACGATTCCGGGCCCCCGAGCTGCTGTTCCAGCCGGACCTTGTCGGGGATGAGAGTGAGGGGCTCCATGAGGTGGTGGCCTTCGCCATACACAAGTCCGACATGGACCTG
CGCCGGACGCTGTTCGCCAACATCGTGCTCTCAGGTGGCTCAACGCTTTTCAAAGGCTTCGGAGACCGATTACTCAGTGAAGTGAAGAAGCTTGCCCCAAAGGATATCAAAATCAAGATCTCAGCCCC
GCAGGAACGGCTGTACTCCACATGGATTGGCGGCTCCATCCTGGCCTCGCTGGACACTTTTAAGAAGATGTGGGTGTCCAAAAAGGAGTATGAAGAGGATGGCTCCCGTGCTATTCATCGCAAAACTT
TCTAGTGCCCAAGGAGGGCGGGGCATGTTGGGAGAGGGGGAGGGAGGGGAGACAGAGCCTTTAACCCTTTTTGGTCTTGGCTCGTATACTAGGCTTAGGGTCCCCTGCATGCCCTGAACCCCTGGGTG
GGTGGCACAGCAGTGCCCCCCTGCAGCCTTCCCCTCTACACAGGACATGCACACACAAGTAACATTGAGCTGCATGGACAGGAGCCTTGAGCTGGCGTGTGGGAATTGAGCGCCATGTCAGGCTGTTG
TGGGTATCCCCCTGGCAGGGCCAGCTAGGCCTGTGGTTCCCTGCTCCGACTCTCAGGGCTGCCTCCCTGAGCTCCAGGGCCAGAATGCCTGGATGCCTGGGTAGCCAGTTTGGGGAGTGGGCTGCAAG
GGGCAGCCAGCAGCTCCCACTGGTGTGTCACTGCATCCATTGCCACCTCCTGTTCGTGACCTGACAGGGTGACACAGCCCCTTTCACACTCTGTCCTCCTATCTTCCTGGGTAGATGCCCTGGTGTAG
GGCTGAGTACTGAATGGTCTTCCATCCCCAGCAAGGGGGTGCAGCCCAGGGTCAGGCCCTTCAGAGCCAGGGCAGAGGATGCACGGTGGCTAGAGCCGCTGCACTATCCTTTTCAGAGCACTTCATCC
ACTTGCTCCTCCCTCTACCCTCGGCACCCTGGGTGGGAAAGGGTTGATGCTCATCATTTATTGAGGGGAAGCCACTTAATAAGGAGTCAGACCTAAAAGGGGGTGGGGGACATTTTCTTACCTCACCC
AAGAAAGAGGTCGTCACTTTTGCTGTGGCCAGGGCCCCACCTCCCTCTCTCAGATATGTACAATAATTTAACACGGTTGCCTGAAAAAAACTTTTGTAAATCATTATAGTAATAATTATGGACAAGGC
CCAGTGTGTGGCTCTGTTTTCTTGTGGC

hide sequence

RefSeq Acc Id:

XM_005263854 ⟹ XP_005263911

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	2	97,655,939 - 97,664,044 (-)	NCBI
GRCh37	2	98,272,402 - 98,280,561 (-)	NCBI

Sequence:

show sequence

CCCGCCCGCCCGCCCATCCGGTGCCTCCTGCAGCCCGCCTGCTGGGCAGGGCCGGCGCGGCCCG
GCCATGGAGTCCTACGACATCATCGCCAACCAGCCTGTGGTCATCGACAACGGTTCGGGGGTGATTAAAGCTGGCTTTGCAGGAGACCAGATTCCCAAATACTGTTTCCCAAACTAGAGCACCGGGGG
CTGCTGACCATCCGCTACCCCATGGAGCACGGCGTGGTGCGAGACTGGAACGACATGGAACGCATCTGGCAGTACGTCTACTCCAAGGATCAGCTGCAGACCTTCTCGGAGGAGCATCCTGTGCTCCT
CACGGAGGCCCCGCTCAACCCGAGTAAGAACCGGGAGAAGGCGGCAGAGGTGTTCTTTGAGACCTTCAACGTGCCGGCCCTGTTCATCTCCATGCAGGCTGTGCTCAGTCTGTACGCAACAGGACGCA
CGACAGGAGTGGTTCTAGACTCAGGGGACGGGGTCACTCATGCTGTGCCCATCTATGAGGGCTTTGCCATGCCTCACTCCATCATGCGGGTGGACATTGCCGGCCGCGACGTCTCCCGCTACCTCCGA
CTCCTGCTGCGCAAGGAAGGGGTTGACTTCCATACCTCGGCTGAGTTTGAGGTTGTCCGGACAATCAAAGAGCGAGCGTGCTACCTGTCCATCAACCCACAGAAGGATGAGGCTCTGGAGACGGAGAA
GGTGCAGTACACGTTGCCAGACGGCAGCACGCTTGATGTGGGGCCTGCACGATTCCGGGCCCCCGAGCTGCTGTTCCAGCCGGACCTTGTCGGGGATGAGAGTGAGGGGCTCCATGAGGTGGTGGCCT
TCGCCATACACAAGTCCGACATGGACCTGCGCCGGACGCTGTTCGCCAACATCGTGCTCTCAGGTGGCTCAACGCTTTTCAAAGGCTTCGGAGACCGATTACTCAGTGAAGTGAAGAAGCTTGCCCCA
AAGGATATCAAAATCAAGATCTCAGCCCCGCAGGAACGGCTGTACTCCACATGGATTGGCGGCTCCATCCTGGCCTCGCTGGACACTTTTAAGAAGATGTGGGTGTCCAAAAAGGAGTATGAAGAGGA
TGGCTCCCGTGCTATTCATCGCAAAACTTTCTAGTGCCCAAGGAGGGCGGGGCATGTTGGGAGAGGGGGAGGGAGGGGAGACAGAGCCTTTAACCCTTTTTGGTCTTGGCTCGTATACTAGGCTTAGG
GTCCCCTGCATGCCCTGAACCCCTGGGTGGGTGGCACAGCAGTGCCCCCCTGCAGCCTTCCCCTCTACACAGGACATGCACACACAAGTAACATTGAGCTGCATGGACAGGAGCCTTGAGCTGGCGTG
TGGGAATTGAGCGCCATGTCAGGCTGTTGTGGGTATCCCCCTGGCAGGGCCAGCTAGGCCTGTGGTTCCCTGCTCCGACTCTCAGGGCTGCCTCCCTGAGCTCCAGGGCCAGAATGCCTGGATGCCTG
GGTAGCCAGTTTGGGGAGTGGGCTGCAAGGGGCAGCCAGCAGCTCCCACTGGTGTGTCACTGCATCCATTGCCACCTCCTGTTCGTGACCTGACAGGGTGACACAGCCCCTTTCACACTCTGTCCTCC
TATCTTCCTGGGTAGATGCCCTGGTGTAGGGCTGAGTACTGAATGGTCTTCCATCCCCAGCAAGGGGGTGCAGCCCAGGGTCAGGCCCTTCAGAGCCAGGGCAGAGGATGCACGGTGGCTAGAGCCGC
TGCACTATCCTTTTCAGAGCACTTCATCCACTTGCTCCTCCCTCTACCCTCGGCACCCTGGGTGGGAAAGGGTTGATGCTCATCATTTATTGAGGGGAAGCCACTTAATAAGGAGTCAGACCTAAAAG
GGGGTGGGGGACATTTTCTTACCTCACCCAAGAAAGAGGTCGTCACTTTTGCTGTGGCCAGGGCCCCACCTCCCTCTCTCAGATATGTACAATAATTTAACACGGTTGCCTGAAAAAAACTTTTGTAA
ATCATTATAGTAATAATTATGGACAAGG

hide sequence

RefSeq Acc Id:

XM_017003116 ⟹ XP_016858605

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	2	97,655,939 - 97,663,789 (-)	NCBI

Sequence:

show sequence

CCTCGGCGCGTCCTCCGCTCACTGCGTGGCCGTCGCCCCCGCCGGGCCGCTGGCTTCGCCCCGG
GGGCGCGCGCCCTCTTGGCCTTGTAAGGCCGGCCATGGGGCGAGCCCCCTCGCCCGCGTCGCAGAGCCTCTTCCCCGACCCCTCCCCGAGTCGGGCGGGGAAGTTCAGGAGAGCTTGAGTGACAGCCG
GGCGGCCGGGCGGGGACGCGCCCCGGACTCTTCTCAGTTGAGAGTGCGGTTCCTGGGCAGGTTTCCACACCAGTTCCTTTCCGCGTCCTTCGGCCCTGGCTCTGGCTGCCTGGCGGAGGGTTCGGGGG
TGATTAAAGCTGGCTTTGCAGGAGACCAGATTCCCAAATACTGTTTCCCAAACTATGTCGGGCGGCCGAAGCACATGCGGGTGATGGCTGGAGCCCTGGAGGGGGACCTCTTCATCGGACCAAAAGCA
GAGGAGCACCGGGGGCTGCTGACCATCCGCTACCCCATGGAGCACGGCGTGGTGCGAGACTGGAACGACATGGAACGCATCTGGCAGTACGTCTACTCCAAGGATCAGCTGCAGACCTTCTCGGAGGA
GCATCCTGTGCTCCTCACGGAGGCCCCGCTCAACCCGAGTAAGAACCGGGAGAAGGCGGCAGAGGTGTTCTTTGAGACCTTCAACGTGCCGGCCCTGTTCATCTCCATGCAGGCTGTGCTCAGTCTGT
ACGCAACAGGACGCACGACAGGAGTGGTTCTAGACTCAGGGGACGGGGTCACTCATGCTGTGCCCATCTATGAGGGCTTTGCCATGCCTCACTCCATCATGCGGGTGGACATTGCCGGCCGCGACGTC
TCCCGCTACCTCCGACTCCTGCTGCGCAAGGAAGGGGTTGACTTCCATACCTCGGCTGAGTTTGAGGTTGTCCGGACAATCAAAGAGCGAGCGTGCTACCTGTCCATCAACCCACAGAAGGATGAGGC
TCTGGAGACGGAGAAGGTGCAGTACACGTTGCCAGACGGCAGCACGCTTGATGTGGGGCCTGCACGATTCCGGGCCCCCGAGCTGCTGTTCCAGCCGGACCTTGTCGGGGATGAGAGTGAGGGGCTCC
ATGAGGTGGTGGCCTTCGCCATACACAAGTCCGACATGGACCTGCGCCGGACGCTGTTCGCCAACATCGTGCTCTCAGGTGGCTCAACGCTTTTCAAAGGCTTCGGAGACCGATTACTCAGTGAAGTG
AAGAAGCTTGCCCCAAAGGATATCAAAATCAAGATCTCAGCCCCGCAGGAACGGCTGTACTCCACATGGATTGGCGGCTCCATCCTGGCCTCGCTGGACACTTTTAAGAAGATGTGGGTGTCCAAAAA
GGAGTATGAAGAGGATGGCTCCCGTGCTATTCATCGCAAAACTTTCTAGTGCCCAAGGAGGGCGGGGCATGTTGGGAGAGGGGGAGGGAGGGGAGACAGAGCCTTTAACCCTTTTTGGTCTTGGCTCG
TATACTAGGCTTAGGGTCCCCTGCATGCCCTGAACCCCTGGGTGGGTGGCACAGCAGTGCCCCCCTGCAGCCTTCCCCTCTACACAGGACATGCACACACAAGTAACATTGAGCTGCATGGACAGGAG
CCTTGAGCTGGCGTGTGGGAATTGAGCGCCATGTCAGGCTGTTGTGGGTATCCCCCTGGCAGGGCCAGCTAGGCCTGTGGTTCCCTGCTCCGACTCTCAGGGCTGCCTCCCTGAGCTCCAGGGCCAGA
ATGCCTGGATGCCTGGGTAGCCAGTTTGGGGAGTGGGCTGCAAGGGGCAGCCAGCAGCTCCCACTGGTGTGTCACTGCATCCATTGCCACCTCCTGTTCGTGACCTGACAGGGTGACACAGCCCCTTT
CACACTCTGTCCTCCTATCTTCCTGGGTAGATGCCCTGGTGTAGGGCTGAGTACTGAATGGTCTTCCATCCCCAGCAAGGGGGTGCAGCCCAGGGTCAGGCCCTTCAGAGCCAGGGCAGAGGATGCAC
GGTGGCTAGAGCCGCTGCACTATCCTTTTCAGAGCACTTCATCCACTTGCTCCTCCCTCTACCCTCGGCACCCTGGGTGGGAAAGGGTTGATGCTCATCATTTATTGAGGGGAAGCCACTTAATAAGG
AGTCAGACCTAAAAGGGGGTGGGGGACATTTTCTTACCTCACCCAAGAAAGAGGTCGTCACTTTTGCTGTGGCCAGGGCCCCACCTCCCTCTCTCAGATATGTACAATAATTTAACACGGTTGCCTGA
AAAAAACTTTTGTAAATCATTATAGTAATAATTATGGACAA

hide sequence

RefSeq Acc Id:

XM_054340086 ⟹ XP_054196061

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	2	98,114,160 - 98,122,265 (-)	NCBI

RefSeq Acc Id:

XM_054340087 ⟹ XP_054196062

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	2	98,114,160 - 98,122,010 (-)	NCBI


Protein RefSeqs	NP_005726	(Get FASTA)	NCBI Sequence Viewer
	XP_005263911	(Get FASTA)	NCBI Sequence Viewer
	XP_016858605	(Get FASTA)	NCBI Sequence Viewer
	XP_054188880	(Get FASTA)	NCBI Sequence Viewer
	XP_054188881	(Get FASTA)	NCBI Sequence Viewer
	XP_054196061	(Get FASTA)	NCBI Sequence Viewer
	XP_054196062	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH04374	(Get FASTA)	NCBI Sequence Viewer
	AAH06372	(Get FASTA)	NCBI Sequence Viewer
	AAH10090	(Get FASTA)	NCBI Sequence Viewer
	AAY24280	(Get FASTA)	NCBI Sequence Viewer
	CAA57691	(Get FASTA)	NCBI Sequence Viewer
	CAA57692	(Get FASTA)	NCBI Sequence Viewer
	EAX01923	(Get FASTA)	NCBI Sequence Viewer
	EAX01924	(Get FASTA)	NCBI Sequence Viewer
	EAX01925	(Get FASTA)	NCBI Sequence Viewer
	EAX01926	(Get FASTA)	NCBI Sequence Viewer
	EAX01927	(Get FASTA)	NCBI Sequence Viewer
	EAX01928	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000289228
	ENSP00000289228.5
	ENSP00000517084.1
GenBank Protein	P42025	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_005726 ⟸ NM_005735

- UniProtKB:

Q53SK5 (UniProtKB/Swiss-Prot), D3DVH2 (UniProtKB/Swiss-Prot), Q9BRB7 (UniProtKB/Swiss-Prot), P42025 (UniProtKB/Swiss-Prot), Q13841 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVF
FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARF
RAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF

hide sequence

RefSeq Acc Id:	XP_005263911 ⟸ XM_005263854
- Peptide Label:	isoform X1
- UniProtKB:	Q13841 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEG VDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKI SAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF hide sequence

RefSeq Acc Id:	XP_016858605 ⟸ XM_017003116
- Peptide Label:	isoform X2
- UniProtKB:	Q13841 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRVMAGALEGDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPV LLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALET EKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYE EDGSRAIHRKTF hide sequence

Ensembl Acc Id:

ENSP00000289228 ⟸ ENST00000289228

RefSeq Acc Id:	XP_054196061 ⟸ XM_054340086
- Peptide Label:	isoform X1
- UniProtKB:	Q13841 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P42025-F1-model_v2	AlphaFold	P42025	1-376	view protein structure

RGD ID:

6796729

Promoter ID:

HG_KWN:34019

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

HeLa_S3, K562, Lymphoblastoid

Transcripts:

OTTHUMT00000329289

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	2	97,642,716 - 97,643,397 (-)	MPROMDB

RGD ID:

6815365

Promoter ID:

HG_MRA:8919

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lymphoblastoid

Transcripts:

X82208

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	2	97,644,456 - 97,644,956 (-)	MPROMDB

RGD ID:

6797374

Promoter ID:

HG_KWN:34020

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000364936, OTTHUMT00000252973, OTTHUMT00000329288, OTTHUMT00000329296

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	2	97,645,836 - 97,647,212 (-)	MPROMDB

RGD ID:

6861110

Promoter ID:

EPDNEW_H3720

Type:

initiation region

Name:

ACTR1B_1

Description:

ARP1 actin-related protein 1 homolog B, centractin beta

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	2	97,664,044 - 97,664,104	EPDNEW

Database	Acc Id	Source(s)
COSMIC	ACTR1B	COSMIC
Ensembl Genes	ENSG00000115073	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSG00000291597	UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000289228	ENTREZGENE
	ENST00000289228.7	UniProtKB/Swiss-Prot
	ENST00000708081.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.420.40	UniProtKB/Swiss-Prot
	Actin, Chain A, domain 4	UniProtKB/Swiss-Prot
GTEx	ENSG00000115073	GTEx
	ENSG00000291597	GTEx
HGNC ID	HGNC:168	ENTREZGENE
Human Proteome Map	ACTR1B	Human Proteome Map
InterPro	Actin	UniProtKB/Swiss-Prot
	Actin/actin-like_CS	UniProtKB/Swiss-Prot
	Actin_CS	UniProtKB/Swiss-Prot
	ATPase_NBD	UniProtKB/Swiss-Prot
KEGG Report	hsa:10120	UniProtKB/Swiss-Prot
NCBI Gene	10120	ENTREZGENE
OMIM	605144	OMIM
PANTHER	PTHR11937	UniProtKB/Swiss-Prot
Pfam	Actin	UniProtKB/Swiss-Prot
PharmGKB	PA24487	PharmGKB
PRINTS	ACTIN	UniProtKB/Swiss-Prot
PROSITE	ACTINS_2	UniProtKB/Swiss-Prot
	ACTINS_ACT_LIKE	UniProtKB/Swiss-Prot
SMART	ACTIN	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF53067	UniProtKB/Swiss-Prot
UniProt	ACTY_HUMAN	UniProtKB/Swiss-Prot
	D3DVH2	ENTREZGENE
	P42025	ENTREZGENE
	Q13841	ENTREZGENE, UniProtKB/TrEMBL
	Q53SK5	ENTREZGENE
	Q9BRB7	ENTREZGENE
UniProt Secondary	D3DVH2	UniProtKB/Swiss-Prot
	Q53SK5	UniProtKB/Swiss-Prot
	Q9BRB7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Name	Description	Reference	Status
2019-01-15	ACTR1B	actin related protein 1B	ARP1 actin related protein 1 homolog B	Symbol and/or name change	5135510	APPROVED
2017-05-02	ACTR1B	ARP1 actin related protein 1 homolog B	ARP1 actin-related protein 1 homolog B, centractin beta	Symbol and/or name change	5135510	APPROVED
2016-04-19	ACTR1B	ARP1 actin-related protein 1 homolog B, centractin beta	ARP1 actin-related protein 1 homolog B, centractin beta (yeast)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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