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Gene: ACTR1B (actin related protein 1B) Pan paniscus

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Symbol:

ACTR1B

Name:

actin related protein 1B

RGD ID:

11816024

Description:

ASSOCIATED WITH Duane retraction syndrome (ortholog); FOUND IN centrosome (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ARP1 actin related protein 1 homolog B; ARP1 actin-related protein 1 homolog B, centractin beta; beta-centractin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	30,791,904 - 30,800,089 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	30,794,764 - 30,802,877 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	101,659,316 - 101,667,402 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	98,555,298 - 98,563,389 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	98,555,298 - 98,563,389 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Bonobo	Duane retraction syndrome		ISO	RGD:1316546	8554872	ClinVar Annotator: match by term: Duane retraction syndrome	ClinVar	PMID:25741868

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Bonobo	centrosome	located_in	IEA	UniProtKB:P42025\|ensembl:ENSP00000289228	150520179		Ensembl	GO_REF:0000107
ACTR1B	Bonobo	cytoplasm	located_in	IEA	UniProtKB:P42025\|ensembl:ENSP00000289228	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACTR1B	Bonobo	protein binding	enables	ISO	UniProtKB:P42858	9068941	PMID:32814053	IntAct	PMID:32814053
ACTR1B	Bonobo	protein binding	enables	ISO	UniProtKB:Q14203	9068941	PMID:26638075, PMID:33961781	IntAct	PMID:26638075\|PMID:33961781
ACTR1B	Bonobo	protein binding	enables	ISO	UniProtKB:Q14203\|UniProtKB:Q9QZB7	9068941	PMID:12857853	IntAct	PMID:12857853

ACTR1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	30,791,904 - 30,800,089 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	30,794,764 - 30,802,877 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	101,659,316 - 101,667,402 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	98,555,298 - 98,563,389 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	98,555,298 - 98,563,389 (-)	Ensembl	panpan1.1		panPan2

ACTR1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	97,655,939 - 97,664,044 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	97,655,939 - 97,664,044 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	98,272,402 - 98,280,507 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	97,638,863 - 97,646,816 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	97,730,948 - 97,738,902	NCBI
Celera	2	92,476,403 - 92,484,541 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	92,038,099 - 92,046,237 (-)	NCBI		HuRef
CHM1_1	2	98,276,759 - 98,284,918 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	98,114,160 - 98,122,265 (-)	NCBI		T2T-CHM13v2.0

Actr1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	36,737,195 - 36,749,051 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	36,737,195 - 36,753,503 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	36,698,114 - 36,710,017 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	36,698,114 - 36,714,422 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	36,756,047 - 36,766,770 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	36,643,748 - 36,654,471 (-)	NCBI		MGSCv36	mm8
Celera	1	36,485,914 - 36,496,820 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.38	NCBI

Actr1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,424,677 - 46,434,341 (-)	NCBI		GRCr8
mRatBN7.2	9	38,928,819 - 38,938,483 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,929,912 - 38,938,507 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	47,431,851 - 47,441,470 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,547,613 - 52,557,279 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,829,511 - 50,839,177 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,267,053 - 43,276,717 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,267,057 - 43,276,685 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	42,919,561 - 42,929,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	35,632,318 - 35,641,982 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	35,635,671 - 35,643,387 (-)	NCBI
Celera	9	36,695,198 - 36,704,862 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

Actr1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,326,096 - 4,336,441 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	4,328,895 - 4,336,441 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACTR1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	44,964,979 - 44,972,607 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	44,899,103 - 44,972,613 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	44,891,846 - 44,899,863 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	45,840,987 - 45,849,007 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	45,841,006 - 45,850,553 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	45,552,752 - 45,560,767 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	45,838,842 - 45,846,851 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	46,022,193 - 46,030,210 (+)	NCBI		UU_Cfam_GSD_1.0

Actr1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,675,139 - 83,682,983 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	928,073 - 936,043 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	928,075 - 935,969 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTR1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	56,610,304 - 56,620,164 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	56,610,356 - 56,619,171 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	59,388,416 - 59,395,936 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACTR1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	1,342,290 - 1,350,496 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	1,342,100 - 1,350,197 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	168,783,466 - 168,791,549 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Actr1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,844,063 - 2,852,290 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	2,844,295 - 2,851,805 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_003806135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034953716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000025555 ⟹ ENSPPAP00000005659

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2A	98,555,298 - 98,563,389 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000025576 ⟹ ENSPPAP00000005666

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2A	98,556,198 - 98,563,178 (-)	Ensembl

RefSeq Acc Id:

XM_003806135 ⟹ XP_003806183

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	12	30,791,904 - 30,800,089 (+)	NCBI
NHGRI_mPanPan1	2A	30,794,764 - 30,802,877 (+)	NCBI
Mhudiblu_PPA_v0	2A	101,659,316 - 101,667,402 (+)	NCBI
PanPan1.1	2A	98,555,298 - 98,563,389 (-)	NCBI

Sequence:

show sequence

CACCTGCTGTCAATCGGGCCAGGTGGGAGCGATGATTGGCCGCCGGGCCCGCCCTCCAGAAAGCCCCGCGGGGCTCGCGTAGGCTGCAGGCTCGGGGAGGGAGGGCAGCGGCGCCGCGTCGGGAGCCG
CCGCCGTCCCGGTCCTCCCGCCCGCCCGCCCATCCGGTGTCTCCTGCAGCCCGCCTGCTGGGCAGGGCCGGCGCGGCCCGGCCATGGAGTCCTACGACATCATCGCCAACCAGCCTGTGGTCATCGAC
AACGGTTCGGGGGTGATTAAAGCTGGCTTTGCAGGAGACCAGATTCCCAAATACTGTTTCCCAAACTATGTCGGGCGGCCGAAGCACATGCGGGTGATGGCTGGAGCCCTGGAGGGGGACCTCTTCAT
CGGACCAAAAGCAGAGGAGCACCGGGGGCTGCTGACCATCCGCTACCCCATGGAGCACGGCGTGGTGCGAGACTGGAACGACATGGAACGCATCTGGCAGTACGTCTACTCCAAGGACCAGCTGCAGA
CCTTCTCAGAGGAGCATCCTGTGCTCCTCACGGAGGCCCCGCTCAACCCGAGTAAGAACCGGGAGAAGGCGGCAGAGGTGTTCTTTGAGACCTTCAACGTGCCGGCCCTGTTCATCTCCATGCAGGCT
GTGCTCAGTCTGTACGCAACGGGACGCACGACAGGAGTGGTTCTAGACTCAGGGGACGGGGTCACTCATGCTGTGCCCATCTATGAGGGCTTTGCCATGCCTCACTCCATCATGCGGGTGGACATTGC
CGGCCGCGACGTCTCCCGCTACCTCCGACTCCTGCTGCGCAAGGAAGGGGTTGACTTCCATACCTCGGCTGAGTTTGAGGTTGTCCGGACAATCAAAGAGCGAGCGTGCTACCTGTCCATCAACCCAC
AGAAGGATGAGGCTCTGGAGACGGAGAAGGTGCAGTACACGTTGCCGGACGGCAGCACGCTCGATGTGGGGCCTGCACGATTCCGGGCCCCCGAGCTGCTGTTCCAGCCGGACCTTGTGGGGGATGAG
AGTGAGGGGCTCCACGAGGTGGTGGCCTTCGCCATACACAAGTCCGACATGGACCTGCGCCGGACGCTGTTCGCCAACATCGTGCTCTCAGGTGGCTCAACGCTTTTCAAAGGCTTCGGAGACCGATT
ACTCAGTGAAGTGAAGAAGCTTGCCCCAAAGGATATCAAAATCAAGATCTCAGCCCCGCAGGAACGGCTGTACTCCACGTGGATTGGCGGCTCCATCCTGGCCTCACTGGACACTTTTAAGAAGATGT
GGGTGTCCAAAAAGGAGTATGAAGAGGATGGCTCCCGTGCTATTCATCGCAAAACTTTCTAGTGCCCAAGGAGGGCGGGGCATGTTGGGAGAGGGGGAGGGAGGGGAGACAGAGCCTTTAACCCTTTT
TGGTCTTGGCTCGTATACTAGGCTTAGGGTCCCCTGCATGCCCTGAACCCCTGGGTGGGCGGCACAGCAGTGCCCCCCTGCAGCCTTCCCCTCTACACACACACGACATGCACACACAAGTAACATTG
AGCTGCATGGACAGGAGCCTTGAGCTGGCGTGTGGGAATTGAGCACCATGTCAGGCTGTTGTGGGTATCCCCCTGGCAGGGCCAGCTAGGCCTGTGGTTCCCTGCTCCGACTCTCAGGGCTGCCTCCC
TGAGCTCCAGGGCCAGAATGCCTGGATGCCTGGGTAGCCAGTTTGGGGAGTGGGCTGCAAGGGGCAGCCAGCAGCTCCCACTGGTGTGTCACTGCATCCATTGCCACCTCCTGTTCGTGACCTGACAG
GGTGACACAGCCCCTTTCACACTCTGTCCTCCTATCTTCCTGGGTAGATGCCCTGGTGTAGGGCTGAGTACTGAATGGTCTTCCATCCCCAGCAAGGGGGTGCAGCCCAGGGTCAGGCCCTTCAGAGC
CAGGGCAGAGGGCGCACGGTGGCCAGAGCTGCTGCACTATCCTTTTCAGAGCACTTCATCCACTTGCTCCTCCCTCTACCCTTGGCACCCTGGGTGGGAAAGGGTTGATGCTCATCATTTATTGAAGG
GAAGCCACTTAATAAGGAGTCAGACCTAAAAGGGGGTGGGGGACATTTTCTTACCTCACCCAAGAAAGAGGTCGTCACTTTTGCTGTGGCCAGGGCCCCACCTCCCTCTCTCAGATATGTACAATAAT
TTAACACGGTTGCCTGAAAAAAAAACTTTTGTAAATCATTATAGTAATAATTATGGACAAGGCCCA

hide sequence

RefSeq Acc Id:

XM_034953716 ⟹ XP_034809607

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	12	30,794,121 - 30,800,089 (+)	NCBI
NHGRI_mPanPan1	2A	30,796,886 - 30,802,877 (+)	NCBI
Mhudiblu_PPA_v0	2A	101,661,411 - 101,667,399 (+)	NCBI


Protein RefSeqs	XP_003806183	(Get FASTA)	NCBI Sequence Viewer
	XP_034809607	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000005659.1
	ENSPPAP00000005666.1

RefSeq Acc Id:	XP_003806183 ⟸ XM_003806135
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZL16 (UniProtKB/TrEMBL), A0A2R8ZNW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVF FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARF RAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF hide sequence

RefSeq Acc Id:	XP_034809607 ⟸ XM_034953716
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZNW0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000005659 ⟸ ENSPPAT00000025555

Ensembl Acc Id:

ENSPPAP00000005666 ⟸ ENSPPAT00000025576

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000023188	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000025555.1	UniProtKB/TrEMBL
	ENSPPAT00000025576.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.40	UniProtKB/TrEMBL
	Actin, Chain A, domain 4	UniProtKB/TrEMBL
InterPro	Actin	UniProtKB/TrEMBL
	Actin/actin-like_CS	UniProtKB/TrEMBL
	Actin_CS	UniProtKB/TrEMBL
	ATPase_NBD	UniProtKB/TrEMBL
KEGG Report	pps:100971719	UniProtKB/TrEMBL
NCBI Gene	ACTR1B	ENTREZGENE
PANTHER	PTHR11937	UniProtKB/TrEMBL
Pfam	Actin	UniProtKB/TrEMBL
PRINTS	ACTIN	UniProtKB/TrEMBL
PROSITE	ACTINS_2	UniProtKB/TrEMBL
	ACTINS_ACT_LIKE	UniProtKB/TrEMBL
SMART	ACTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53067	UniProtKB/TrEMBL
UniProt	A0A2R8ZL16	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZNW0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-15	ACTR1B	actin related protein 1B		ARP1 actin related protein 1 homolog B	Symbol and/or name change	5135510	APPROVED
2017-05-09	ACTR1B	ARP1 actin related protein 1 homolog B		ARP1 actin-related protein 1 homolog B, centractin beta	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar