GWAS1289789_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1289789_H (cortical thickness QTL GWAS1289789 (human)) Homo sapiens

Symbol: GWAS1289789_H
Name: cortical thickness QTL GWAS1289789 (human)
RGD ID: 597193715
Trait: cortical thickness
LOD Score: Not Available
P Value: 3.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38297,658,891 - 97,658,892RGD_MAPPER_PIPELINEGRCh38
GRCh37298,275,354 - 98,275,355RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1289789_HHumancortical thickness  IAGPrs11692435405850206 GWAS_CATALOGPMID:36893272

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316546ACTR1Bactin related protein 1B29765593997664044Human


Peak: (rs11692435)
Human AssemblyChrPosition (strand)Source
GRCh38297,658,891 - 97,658,892RGD_MAPPER_PIPELINE


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597113141GWAS1209215_Hbitter alcoholic beverage consumption measurement QTL GWAS1209215 (human)4e-09cortical thicknessdrink intake measurement (CMO:0000771)29765889197658892Human
597028144GWAS1124218_Hbody mass index QTL GWAS1124218 (human)3e-08body mass indexbody mass index (BMI) (CMO:0000105)29765889197658892Human
597225841GWAS1321915_Hsmoking status measurement QTL GWAS1321915 (human)4e-08smoking status measurement29765889197658892Human
597139261GWAS1235335_Hneuroimaging measurement QTL GWAS1235335 (human)1e-18neuroimaging measurement29765889197658892Human
597193715GWAS1289789_Hcortical thickness QTL GWAS1289789 (human)3e-13cortical thickness29765889197658892Human
597215637GWAS1311711_Hsmoking status measurement QTL GWAS1311711 (human)2e-12smoking status measurement29765889197658892Human
597192757GWAS1288831_Hcortical thickness QTL GWAS1288831 (human)1e-13cortical thickness29765889197658892Human
597324661GWAS1420735_Hcolorectal cancer QTL GWAS1420735 (human)7e-12colorectal cancer29765889197658892Human
597206441GWAS1302515_Hcolorectal cancer QTL GWAS1302515 (human)1e-08colorectal cancer29765889197658892Human
597194346GWAS1290420_Hcortical thickness QTL GWAS1290420 (human)7e-10cortical thickness29765889197658892Human

1 to 10 of 20 rows


1 to 20 of 28 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1289789_H GCST90271815 Cortical thickness 32,488 European ancestry individuals ? NR 3E-13 12.523 rs11692435 0.1003 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1704659_H GCST010703 Brain morphology (MOSTest) 26,502 European ancestry individuals ? NR 1E-10 10 rs11692435 N/A brain attribute (OBA:2045210)
neuroimaging measurement (EFO:0004346)
 PMID:32665545
GWAS1124218_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 3E-8 7.523 rs11692435 N/A body mass index (EFO:0004340)
 PMID:30595370
GWAS587407_H GCST010281 Cortical thickness 33,992 European ancestry individuals A 0.087 5E-10 9.302 rs11692435 0.005775975 cortical thickness (EFO:0004840)
 PMID:32193296
GWAS1715769_H GCST007461 Alcohol consumption (drinks per week) up to 941,280 European ancestry individuals A 0.0852 3E-11 10.523 rs11692435 0.017449895 alcohol consumption quality (OBA:1000840)
 PMID:30643251
GWAS1720662_H GCST007328 Alcohol consumption (drinks per week) 414,343 European ancestry individuals A 0.0839 2E-10 9.699 rs11692435 0.025667628 alcohol consumption quality (OBA:1000840)
 PMID:30643258
GWAS1209215_H GCST008522 Bitter alcoholic beverage consumption 336,448 European ancestry individuals A 0.084 4E-9 8.398 rs11692435 0.0112 bitter alcoholic beverage consumption measurement (EFO:0010092)
 PMID:31046077
GWAS1732706_H GCST007472 Alcohol consumption (drinks per week) (MTAG) up to 1,039,210 European ancestry individuals A 0.0852 3E-15 14.523 rs11692435 0.0189977 alcohol consumption quality (OBA:1000840)
 PMID:30643251
GWAS1235335_H GCST90239729 Brain morphology (MOSTest) 33,735 white British ancestry individuals ? NR 1E-18 18 rs11692435 N/A neuroimaging measurement (EFO:0004346)
 PMID:35164939
GWAS1274033_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 8E-9 8.097 rs11692435 0.0138 body mass index (EFO:0004340)
 PMID:36581621
GWAS1288441_H GCST90271809 Perisylvian thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 4E-15 14.398 rs11692435 0.1078 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1288831_H GCST90271810 Superior parietal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 1E-13 13 rs11692435 0.1025 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290001_H GCST90271802 Dorsolateral prefrontal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 3E-14 13.523 rs11692435 0.1049 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290218_H GCST90271803 Inferior parietal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 5E-15 14.302 rs11692435 0.1078 cortical thickness (EFO:0004840)
 PMID:36893272
None Available GCST90271813 Ventromedial occipital thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 1E-13 13 rs11692435 0.1024 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290420_H GCST90271804 Medial prefrontal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 7E-10 9.155 rs11692435 0.0849 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290922_H GCST90271806 Middle temporal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 1E-11 11 rs11692435 0.0935 cortical thickness (EFO:0004840)
 PMID:36893272
None Available GCST90271807 Motor premotor thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 1E-11 11 rs11692435 0.0935 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1302515_H GCST007992 Colorectal cancer 31,197 European ancestry cases, 61,770 European ancestry controls G 0.9 1E-8 8 rs11692435 1.12 PMID:31089142
GWAS1311711_H GCST007468 Smoking initiation (ever regular vs never regular) (MTAG) up to 1,359,002 European ancestry individuals A 0.0848 2E-12 11.699 rs11692435 0.0138007 smoking status measurement (EFO:0006527)
 PMID:30643251
1 to 20 of 28 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90271815 GWAS Catalog

Note Type Note Reference