Tenm3 (teneurin transmembrane protein 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tenm3 (teneurin transmembrane protein 3) Mus musculus
Analyze
Symbol: Tenm3
Name: teneurin transmembrane protein 3
RGD ID: 1315372
MGI Page MGI
Description: Enables protein heterodimerization activity and protein homodimerization activity. Involved in several processes, including homophilic cell adhesion via plasma membrane adhesion molecules; regulation of homophilic cell adhesion; and synaptic membrane adhesion. Located in plasma membrane. Is active in glutamatergic synapse and presynaptic active zone membrane. Is expressed in several structures, including alimentary system; branchial arch; genitourinary system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in cocaine dependence. Orthologous to human TENM3 (teneurin transmembrane protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610100B16Rik; mKIAA1455; odd Oz/ten-m homolog 3; Odz; Odz1; Odz3; ten-3; Ten-m; Ten-m3; tenascin-M3; teneurin-3; teneurin-3 transcript variant A0B0; teneurin-3 transcript variant A0B1; teneurin-3 transcript variant A1B0; teneurin-3 transcript variant A1B1; teneurin-3 transcript variant A2B0; teneurin-3 transcript variant A2B1; teneurin-3 transcript variant A3B0; teneurin-3 transcript variant A3B1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,678,700 - 51,370,255 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl848,680,717 - 49,296,986 (-)EnsemblGRCm39 Ensembl
GRCm38848,225,665 - 49,522,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl848,227,682 - 48,843,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37849,311,019 - 49,760,044 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36849,726,501 - 50,173,507 (-)NCBIMGSCv36mm8
Celera850,895,477 - 51,344,899 (-)NCBICelera
Cytogenetic Map8B1.2- B1.3NCBI
cM Map827.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mousecocaine dependence susceptibilityISORGD:1315371401851917DNA:SNP:: (rs1514483) (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mousegenetic disease  ISORGD:13153718554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868|PMID:28492532|PMID:30513139
Tenm3MouseMeniere's disease  ISORGD:13153718554872ClinVar Annotator: match by term: Meniere diseaseClinVar 
Tenm3MouseMicrophthalmia/Coloboma 9  ISORGD:13153718554872ClinVar Annotator: match by term: MICROPHTHALMIA, SYNDROMIC 15 | ClinVar Annotator: match by term: Microphthalmia, more ...ClinVarPMID:22766609|PMID:25741868|PMID:27103084|PMID:28492532|PMID:29753094|PMID:30513139|PMID:32799327|PMID:33456446
Tenm3Mousemyoepithelioma  ISORGD:13153718554872ClinVar Annotator: match by term: Myoepithelial tumorClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3MouseCocaine-Related Disorders  ISORGD:131537111554173CTD Direct Evidence: marker/mechanismCTDPMID:18438686
Tenm3Mouseoccupational asthma  ISORGD:131537111554173CTD Direct Evidence: marker/mechanismCTDPMID:25918132
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3MouseMicrophthalmia/Coloboma 9  ISORGD:13153717240710 OMIM 

1 to 20 of 121 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mouse1,2-dichloroethane decreases expressionEXP 6480464ethylene dichloride results in decreased expression of TENM3 mRNACTDPMID:28960355
Tenm3Mouse1,2-dimethylhydrazine increases expressionEXP 64804641,2-Dimethylhydrazine results in increased expression of TENM3 mRNACTDPMID:22206623
Tenm3Mouse17beta-estradiol multiple interactionsISORGD:13153716480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of TENM3 mRNACTDPMID:19619570
Tenm3Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of TENM3 mRNACTDPMID:39298647
Tenm3Mouse17beta-estradiol decreases expressionISORGD:13153716480464Estradiol results in decreased expression of TENM3 mRNACTDPMID:19619570|PMID:21185374
Tenm3Mouse2,2',4,4',5,5'-hexachlorobiphenyl decreases expressionISORGD:131537164804642,4,5,2',4',5'-hexachlorobiphenyl results in decreased expression of TENM3 mRNACTDPMID:23146750
Tenm3Mouse2,3',4,4',5-Pentachlorobiphenyl decreases expressionEXP 64804642,3',4,4',5-pentachlorobiphenyl results in decreased expression of TENM3 mRNACTDPMID:31388691
Tenm3Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13153716480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of TENM3 mRNACTDPMID:19619570
Tenm3Mouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13066416480464Tetrachlorodibenzodioxin results in decreased expression of TENM3 mRNACTDPMID:33387578
Tenm3Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13066416480464Tetrachlorodibenzodioxin results in increased expression of TENM3 mRNACTDPMID:34747641
Tenm3Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13066416480464Tetrachlorodibenzodioxin affects the expression of TENM3 mRNACTDPMID:22298810
Tenm3Mouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13153716480464Tetrachlorodibenzodioxin results in decreased expression of TENM3 mRNACTDPMID:19619570
Tenm3Mouse2,4,6-tribromophenol increases expressionISORGD:131537164804642,4,6-tribromophenol results in increased expression of TENM3 mRNACTDPMID:31675489
Tenm3Mouse2-bromohexadecanoic acid multiple interactionsISORGD:131537164804642-bromopalmitate inhibits the reaction [[Cadmium Chloride results in increased abundance of Cadmium] which results in more ...CTDPMID:38195004
Tenm3Mouse2-methylcholine affects expressionISORGD:13153716480464beta-methylcholine affects the expression of TENM3 mRNACTDPMID:21179406
Tenm3Mouse3,3',4,4',5-pentachlorobiphenyl decreases expressionISORGD:131537164804643,4,5,3',4'-pentachlorobiphenyl results in decreased expression of TENM3 mRNACTDPMID:23146750
Tenm3Mouse3,3',5,5'-tetrabromobisphenol A increases expressionISORGD:13153716480464tetrabromobisphenol A results in increased expression of TENM3 proteinCTDPMID:31675489
Tenm3Mouse4,4'-diaminodiphenylmethane affects expressionEXP 64804644,4'-diaminodiphenylmethane affects the expression of TENM3 mRNACTDPMID:18648102
Tenm3Mouse4,4'-sulfonyldiphenol decreases expressionISORGD:13153716480464bisphenol S results in decreased expression of TENM3 mRNACTDPMID:25912373
Tenm3Mouse4,4'-sulfonyldiphenol decreases methylationISORGD:13153716480464bisphenol S results in decreased methylation of TENM3 geneCTDPMID:31601247

1 to 20 of 121 rows

Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mousecamera-type eye morphogenesis involved_inISOUniProtKB:Q9P2732290270 GO_CentralGO_REF:0000119
Tenm3Mousecell differentiation involved_inIEAUniProtKB-KW:KW-02212290270 UniProtGO_REF:0000043
Tenm3Mousehomophilic cell adhesion via plasma membrane adhesion molecules involved_inIDA 2290270 PMID:17478416UniProtPMID:17478416
Tenm3Mouseneuron development involved_inIBAPANTHER:PTN000131466|ZFIN:ZDB-GENE-990714-20|UniProtKB:Q6N022|ZFIN:ZDB-GENE-990714-192290270 GO_CentralGO_REF:0000033
Tenm3Mousepositive regulation of neuron projection development involved_inIDA 2290270 PMID:17478416, PMID:29414938UniProtPMID:17478416|PMID:29414938
Tenm3Mousepositive regulation of neuron projection development involved_inIMP 2290270 PMID:17803360, PMID:23028443UniProtPMID:17803360|PMID:23028443
Tenm3Mouseregulation of homophilic cell adhesion NOT|involved_inIDA 2290270 PMID:29414938UniProtPMID:29414938
Tenm3Mouseregulation of homophilic cell adhesion involved_inIDA 2290270 PMID:29414938UniProtPMID:29414938
Tenm3Mousesignal transduction involved_inIEAInterPro:IPR0094712290270 InterProGO_REF:0000002
Tenm3Mousesynaptic membrane adhesion involved_inIDA 2290270 PMID:35484136SynGOPMID:35484136
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mouseaxon located_inIEAUniProtKB-SubCell:SL-02792290270 UniProtGO_REF:0000044
Tenm3Mouseglutamatergic synapse is_active_inIDA 2290270 PMID:35484136SynGOPMID:35484136
Tenm3Mousemembrane located_inIDA 2290270 PMID:17478416UniProtPMID:17478416
Tenm3Mouseneuron projection is_active_inIBAPANTHER:PTN000131466|UniProtKB:Q9DER5|MGI:2447063|RGD:7279072290270 GO_CentralGO_REF:0000033
Tenm3Mouseplasma membrane located_inIDA 2290270 PMID:29414938UniProtPMID:29414938
Tenm3Mouseplasma membrane located_inISS 2290270 PMID:10625539MGIPMID:10625539
Tenm3Mousepresynaptic active zone membrane is_active_inIDA 2290270 PMID:35484136SynGOPMID:35484136

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mousecell adhesion molecule binding enablesIBAPANTHER:PTN000131466|RGD:727907|UniProtKB:Q9NT682290270 GO_CentralGO_REF:0000033
Tenm3Mouseidentical protein binding enablesIPIPR:Q9WTS62290270 PMID:12000766, PMID:29414938MGIPMID:12000766|PMID:29414938
Tenm3Mouseprotein binding enablesIPIPR:Q9WTS52290270 PMID:12000766MGIPMID:12000766
Tenm3Mouseprotein binding enablesIPIPR:Q80TS32290270 PMID:29414938MGIPMID:29414938
Tenm3Mouseprotein heterodimerization activity enablesIDA 2290270 PMID:12000766, PMID:29414938UniProtPMID:12000766|PMID:29414938
Tenm3Mouseprotein heterodimerization activity enablesIBAPANTHER:PTN000131466|MGI:1345185|MGI:1345183|MGI:13451842290270 GO_CentralGO_REF:0000033
Tenm3Mouseprotein homodimerization activity enablesIBAPANTHER:PTN000131466|MGI:1345184|MGI:2447063|MGI:13451852290270 GO_CentralGO_REF:0000033
Tenm3Mouseprotein homodimerization activity NOT|enablesIDA 2290270 PMID:29414938UniProtPMID:29414938
Tenm3Mouseprotein homodimerization activity enablesIDA 2290270 PMID:12000766, PMID:29414938UniProtPMID:12000766|PMID:29414938
1 to 9 of 9 rows

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tenm3Mouseabnormal sensory capabilities/reflexes/nociception  IAGP 5509061 MGIPMID:17803360
Tenm3Mouseabnormal sensory neuron innervation pattern  IAGP 5509061 MGIPMID:17803360
Tenm3Mousepremature death  IAGP 5509061 MGIPMID:17803360

#
Reference Title
Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Substance dependence low-density whole genome association study in two distinct American populations. Yu Y, etal., Hum Genet. 2008 Jun;123(5):495-506. doi: 10.1007/s00439-008-0501-0. Epub 2008 Apr 26.
PMID:8549854   PMID:10225957   PMID:10349636   PMID:10512203   PMID:10625539   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11812828   PMID:12000766   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:12693553   PMID:12915301   PMID:14610273   PMID:14681479   PMID:15747579   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16919269   PMID:16919471  
PMID:16923961   PMID:17478416   PMID:17614941   PMID:17803360   PMID:18799693   PMID:18957218   PMID:19521566   PMID:20615956   PMID:21150899   PMID:21677750   PMID:21873635   PMID:22065784  
PMID:22499796   PMID:22689450   PMID:23028443   PMID:23431145   PMID:24952961   PMID:25406022   PMID:26514267   PMID:27100196   PMID:28558017   PMID:28705898   PMID:29207951   PMID:29414938  
PMID:30713523   PMID:31073041   PMID:31767573   PMID:31812516   PMID:32158383   PMID:32960451   PMID:34083484   PMID:34321999   PMID:35245678   PMID:35484136   PMID:36635245   PMID:37442135  
PMID:37700636   PMID:38048352   PMID:38713721   PMID:39348458   PMID:39818903  



Tenm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,678,700 - 51,370,255 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl848,680,717 - 49,296,986 (-)EnsemblGRCm39 Ensembl
GRCm38848,225,665 - 49,522,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl848,227,682 - 48,843,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37849,311,019 - 49,760,044 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36849,726,501 - 50,173,507 (-)NCBIMGSCv36mm8
Celera850,895,477 - 51,344,899 (-)NCBICelera
Cytogenetic Map8B1.2- B1.3NCBI
cM Map827.02NCBI
TENM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384181,447,613 - 182,803,024 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4182,143,987 - 182,803,024 (+)EnsemblGRCh38hg38GRCh38
GRCh374183,065,116 - 183,724,177 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364183,482,131 - 183,961,171 (+)NCBINCBI36Build 36hg18NCBI36
Build 344183,539,732 - 183,969,496NCBI
Celera4180,576,661 - 181,055,801 (+)NCBICelera
Cytogenetic Map4q34.3-q35.1NCBI
HuRef4179,000,986 - 179,481,448 (+)NCBIHuRef
CHM1_14183,221,672 - 183,700,754 (+)NCBICHM1_1
T2T-CHM13v2.04184,789,727 - 186,144,894 (+)NCBIT2T-CHM13v2.0
Tenm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81647,984,732 - 50,711,352 (+)NCBIGRCr8
mRatBN7.21641,251,909 - 43,978,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1641,252,182 - 43,978,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1648,938,379 - 49,382,048 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01652,298,931 - 52,742,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01647,588,478 - 48,031,955 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01646,422,676 - 46,929,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1646,731,403 - 46,926,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01645,990,922 - 46,657,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41646,648,771 - 47,149,524 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11646,648,894 - 47,146,821 (+)NCBI
Celera1641,552,578 - 41,996,819 (+)NCBICelera
Cytogenetic Map16q11NCBI
Tenm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,923,750 - 26,365,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,920,919 - 26,534,817 (-)NCBIChiLan1.0ChiLan1.0
TENM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23177,814,108 - 180,549,529 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14178,975,800 - 180,909,640 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04173,644,674 - 174,993,218 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14186,559,404 - 187,215,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4186,738,624 - 187,214,394 (+)Ensemblpanpan1.1panPan2
TENM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11647,440,673 - 47,883,311 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,441,348 - 48,044,322 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,441,348 - 48,044,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3435,883,742 - 36,484,794 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01649,668,415 - 50,270,109 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1649,667,658 - 50,270,179 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11647,632,059 - 48,232,872 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01648,244,814 - 48,846,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01648,385,358 - 48,987,162 (-)NCBIUU_Cfam_GSD_1.0
Tenm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494331,100,860 - 31,929,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365546,183,722 - 6,619,982 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365546,180,883 - 6,871,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1543,540,375 - 44,399,711 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11541,818,190 - 44,401,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21550,292,659 - 50,995,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TENM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17127,231,840 - 128,792,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7128,598,835 - 128,795,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tenm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476913,104,585 - 13,579,136 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476912,831,899 - 13,579,957 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Tenm3
226251 total Variants

Predicted Target Of
Summary Value
Count of predictions:769
Count of miRNA genes:422
Interacting mature miRNAs:475
Transcripts:ENSMUST00000033965, ENSMUST00000110343, ENSMUST00000110345, ENSMUST00000110346, ENSMUST00000129821, ENSMUST00000145344
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301139Lmr10_mleishmaniasis resistance 10 (mouse)Not determined83532109757797633Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
11049577Lmr10b_mleishmaniasis resistance 10b (mouse)83532109757797633Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
11049578Lmr10c_mleishmaniasis resistance 10c (mouse)83532109757797633Mouse
11041902Lmr10a_mleishmaniasis resistance 10a (mouse)83532109757797633Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse

1 to 10 of 30 rows
D8Mit127  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38848,535,288 - 48,535,438UniSTSGRCm38
MGSCv37849,620,642 - 49,620,792UniSTSGRCm37
Celera851,205,858 - 51,206,008UniSTS
Cytogenetic Map8B2UniSTS
cM Map829.0UniSTS
Whitehead Genetic830.6UniSTS
Whitehead/MRC_RH8581.14UniSTS
Whitehead_YAC8 UniSTS
D8Mit298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38848,286,279 - 48,286,401UniSTSGRCm38
MGSCv37849,371,633 - 49,371,755UniSTSGRCm37
Celera850,956,001 - 50,956,123UniSTS
Cytogenetic Map8B2UniSTS
cM Map829.0UniSTS
Whitehead Genetic830.6UniSTS
Whitehead/MRC_RH8569.04UniSTS
Whitehead_YAC8 UniSTS
D8Mit53  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38848,347,029 - 48,347,166UniSTSGRCm38
MGSCv37849,432,383 - 49,432,520UniSTSGRCm37
Celera851,016,787 - 51,016,924UniSTS
Cytogenetic Map8B2UniSTS
cM Map829.0UniSTS
Whitehead Genetic830.6UniSTS
Whitehead/MRC_RH8569.04UniSTS
Whitehead_YAC8 UniSTS
Odz3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8B2UniSTS
cM Map8 UniSTS
cM Map827.02UniSTS
Odz3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8B2UniSTS
cM Map827.02UniSTS
cM Map8 UniSTS






1 to 30 of 89 rows
RefSeq Transcripts NM_001145937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 89 rows

Ensembl Acc Id: ENSMUST00000033965   ⟹   ENSMUSP00000033965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,680,717 - 49,127,725 (-)Ensembl
GRCm38.p6 Ensembl848,227,682 - 48,674,690 (-)Ensembl
Ensembl Acc Id: ENSMUST00000110343   ⟹   ENSMUSP00000105972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,848,471 - 49,009,074 (-)Ensembl
GRCm38.p6 Ensembl848,395,436 - 48,556,039 (-)Ensembl
Ensembl Acc Id: ENSMUST00000110345   ⟹   ENSMUSP00000105974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,848,471 - 49,008,881 (-)Ensembl
GRCm38.p6 Ensembl848,395,436 - 48,555,846 (-)Ensembl
Ensembl Acc Id: ENSMUST00000110346   ⟹   ENSMUSP00000105975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,788,228 - 49,008,348 (-)Ensembl
GRCm38.p6 Ensembl848,335,193 - 48,555,313 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,728,950 - 48,753,134 (-)Ensembl
GRCm38.p6 Ensembl848,275,915 - 48,300,099 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190840   ⟹   ENSMUSP00000140141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,680,961 - 49,127,719 (-)Ensembl
GRCm38.p6 Ensembl848,227,926 - 48,674,684 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211812   ⟹   ENSMUSP00000148666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl849,099,296 - 49,296,986 (-)Ensembl
GRCm38.p6 Ensembl848,646,261 - 48,843,951 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211976   ⟹   ENSMUSP00000148613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl848,820,357 - 49,008,348 (-)Ensembl
GRCm38.p6 Ensembl848,367,322 - 48,555,313 (-)Ensembl
RefSeq Acc Id: NM_001145937   ⟹   NP_001139409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,700 - 49,127,725 (-)NCBI
GRCm38848,225,665 - 48,674,690 (-)NCBI
MGSCv37849,311,019 - 49,760,044 (-)RGD
Celera850,895,477 - 51,344,899 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011857   ⟹   NP_035987
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,700 - 49,127,725 (-)NCBI
GRCm38848,225,665 - 48,674,690 (-)NCBI
MGSCv37849,311,019 - 49,760,044 (-)RGD
Celera850,895,477 - 51,344,899 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509404   ⟹   XP_006509467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,296,376 (-)NCBI
GRCm38848,225,673 - 48,843,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509405   ⟹   XP_006509468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
GRCm38848,225,673 - 49,522,824 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509409   ⟹   XP_006509472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,033,694 (-)NCBI
GRCm38848,225,673 - 48,580,663 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242216   ⟹   XP_011240518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,297,210 (-)NCBI
GRCm38848,225,673 - 48,844,175 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242217   ⟹   XP_011240519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,296,987 (-)NCBI
GRCm38848,225,673 - 48,843,958 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242218   ⟹   XP_011240520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,297,008 (-)NCBI
GRCm38848,225,673 - 48,844,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312772   ⟹   XP_017168261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,296,206 (-)NCBI
GRCm38848,225,673 - 48,843,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312778   ⟹   XP_017168267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,881 (-)NCBI
GRCm38848,225,673 - 48,555,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243525   ⟹   XP_030099385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,033,693 (-)NCBI
GRCm38848,225,673 - 48,580,663 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243526   ⟹   XP_030099386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,033,693 (-)NCBI
GRCm38848,225,673 - 48,580,663 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243527   ⟹   XP_030099387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,156 (-)NCBI
GRCm38848,225,673 - 48,555,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243528   ⟹   XP_030099388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,033,690 (-)NCBI
GRCm38848,225,673 - 48,580,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153984   ⟹   XP_036009877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153985   ⟹   XP_036009878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153986   ⟹   XP_036009879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153987   ⟹   XP_036009880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153988   ⟹   XP_036009881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153989   ⟹   XP_036009882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153990   ⟹   XP_036009883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153991   ⟹   XP_036009884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153992   ⟹   XP_036009885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153993   ⟹   XP_036009886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153994   ⟹   XP_036009887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153995   ⟹   XP_036009888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153996   ⟹   XP_036009889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153997   ⟹   XP_036009890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,296,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153998   ⟹   XP_036009891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153999   ⟹   XP_036009892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,297,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154000   ⟹   XP_036009893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,297,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154002   ⟹   XP_036009895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,297,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154003   ⟹   XP_036009896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,296,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154004   ⟹   XP_036009897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,296,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154005   ⟹   XP_036009898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 51,370,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154006   ⟹   XP_036009899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 50,615,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154007   ⟹   XP_036009900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,297,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154008   ⟹   XP_036009901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,158 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154009   ⟹   XP_036009902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154010   ⟹   XP_036009903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154011   ⟹   XP_036009904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154012   ⟹   XP_036009905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,678,708 - 49,008,894 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154013   ⟹   XP_036009906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,710,049 - 49,008,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154014   ⟹   XP_036009907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39848,710,049 - 49,008,906 (-)NCBI
Sequence:
1 to 30 of 64 rows
Protein RefSeqs NP_001139409 (Get FASTA)   NCBI Sequence Viewer  
  NP_035987 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509467 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509468 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509472 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240518 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240519 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240520 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168261 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168267 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099385 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099386 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099387 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099388 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009877 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009878 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009879 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009880 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009881 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009882 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009883 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009884 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009885 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009886 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009887 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009888 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009889 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009890 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009891 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009892 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 64 rows
1 to 5 of 51 rows
1 to 5 of 51 rows
RefSeq Acc Id: NP_035987   ⟸   NM_011857
- Peptide Label: isoform 1
- UniProtKB: Q9WTS6 (UniProtKB/Swiss-Prot),   Q9JLC1 (UniProtKB/Swiss-Prot),   Q9CSV2 (UniProtKB/Swiss-Prot),   Q8BSL5 (UniProtKB/Swiss-Prot),   Q80TD2 (UniProtKB/Swiss-Prot),   Q3UX72 (UniProtKB/Swiss-Prot),   Q3UVR9 (UniProtKB/Swiss-Prot),   A0A2K9QL87 (UniProtKB/Swiss-Prot),   A0A2K9QL36 (UniProtKB/Swiss-Prot),   A0A2K9QL11 (UniProtKB/Swiss-Prot),   A0A2K9QL04 (UniProtKB/Swiss-Prot),   A0A2K9QL03 (UniProtKB/Swiss-Prot),   A0A2K9QL01 (UniProtKB/Swiss-Prot),   A0A2K9QKZ0 (UniProtKB/Swiss-Prot),   A0A2K9QKY6 (UniProtKB/Swiss-Prot),   G3X907 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139409   ⟸   NM_001145937
- Peptide Label: isoform 2
- UniProtKB: Q9WTS6 (UniProtKB/Swiss-Prot),   Q9JLC1 (UniProtKB/Swiss-Prot),   Q9CSV2 (UniProtKB/Swiss-Prot),   Q8BSL5 (UniProtKB/Swiss-Prot),   Q80TD2 (UniProtKB/Swiss-Prot),   Q3UX72 (UniProtKB/Swiss-Prot),   Q3UVR9 (UniProtKB/Swiss-Prot),   A0A2K9QL87 (UniProtKB/Swiss-Prot),   A0A2K9QL36 (UniProtKB/Swiss-Prot),   A0A2K9QL11 (UniProtKB/Swiss-Prot),   A0A2K9QL04 (UniProtKB/Swiss-Prot),   A0A2K9QL03 (UniProtKB/Swiss-Prot),   A0A2K9QL01 (UniProtKB/Swiss-Prot),   A0A2K9QKZ0 (UniProtKB/Swiss-Prot),   A0A2K9QKY6 (UniProtKB/Swiss-Prot),   B7ZNJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509468   ⟸   XM_006509405
- Peptide Label: isoform X9
- UniProtKB: Q9WTS6 (UniProtKB/Swiss-Prot),   Q9JLC1 (UniProtKB/Swiss-Prot),   Q9CSV2 (UniProtKB/Swiss-Prot),   Q8BSL5 (UniProtKB/Swiss-Prot),   Q80TD2 (UniProtKB/Swiss-Prot),   Q3UX72 (UniProtKB/Swiss-Prot),   Q3UVR9 (UniProtKB/Swiss-Prot),   A0A2K9QL87 (UniProtKB/Swiss-Prot),   A0A2K9QL36 (UniProtKB/Swiss-Prot),   A0A2K9QL11 (UniProtKB/Swiss-Prot),   A0A2K9QL04 (UniProtKB/Swiss-Prot),   A0A2K9QL03 (UniProtKB/Swiss-Prot),   A0A2K9QL01 (UniProtKB/Swiss-Prot),   A0A2K9QKZ0 (UniProtKB/Swiss-Prot),   A0A2K9QKY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509467   ⟸   XM_006509404
- Peptide Label: isoform X9
- UniProtKB: Q9WTS6 (UniProtKB/Swiss-Prot),   Q9JLC1 (UniProtKB/Swiss-Prot),   Q9CSV2 (UniProtKB/Swiss-Prot),   Q8BSL5 (UniProtKB/Swiss-Prot),   Q80TD2 (UniProtKB/Swiss-Prot),   Q3UX72 (UniProtKB/Swiss-Prot),   Q3UVR9 (UniProtKB/Swiss-Prot),   A0A2K9QL87 (UniProtKB/Swiss-Prot),   A0A2K9QL36 (UniProtKB/Swiss-Prot),   A0A2K9QL11 (UniProtKB/Swiss-Prot),   A0A2K9QL04 (UniProtKB/Swiss-Prot),   A0A2K9QL03 (UniProtKB/Swiss-Prot),   A0A2K9QL01 (UniProtKB/Swiss-Prot),   A0A2K9QKZ0 (UniProtKB/Swiss-Prot),   A0A2K9QKY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509472   ⟸   XM_006509409
- Peptide Label: isoform X15
- UniProtKB: Q9WTS6 (UniProtKB/Swiss-Prot),   Q9JLC1 (UniProtKB/Swiss-Prot),   Q9CSV2 (UniProtKB/Swiss-Prot),   Q8BSL5 (UniProtKB/Swiss-Prot),   Q80TD2 (UniProtKB/Swiss-Prot),   Q3UX72 (UniProtKB/Swiss-Prot),   Q3UVR9 (UniProtKB/Swiss-Prot),   A0A2K9QL87 (UniProtKB/Swiss-Prot),   A0A2K9QL36 (UniProtKB/Swiss-Prot),   A0A2K9QL11 (UniProtKB/Swiss-Prot),   A0A2K9QL04 (UniProtKB/Swiss-Prot),   A0A2K9QL03 (UniProtKB/Swiss-Prot),   A0A2K9QL01 (UniProtKB/Swiss-Prot),   A0A2K9QKZ0 (UniProtKB/Swiss-Prot),   A0A2K9QKY6 (UniProtKB/Swiss-Prot)
- Sequence:
EGF-like   Teneurin N-terminal

RGD ID:8667073
Promoter ID:EPDNEW_M11568
Type:single initiation site
Name:Tenm3_2
Description:Mus musculus teneurin transmembrane protein 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11569  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38848,552,897 - 48,552,957EPDNEW
RGD ID:8667075
Promoter ID:EPDNEW_M11569
Type:initiation region
Name:Tenm3_1
Description:Mus musculus teneurin transmembrane protein 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11568  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38848,555,209 - 48,555,269EPDNEW
RGD ID:6843568
Promoter ID:MM_KWN:54400
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:ENSMUST00000110343,   ENSMUST00000110345,   ENSMUST00000110346
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36849,640,601 - 49,641,101 (-)MPROMDB


1 to 40 of 64 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000031561 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000033965 ENTREZGENE
  ENSMUST00000190840 ENTREZGENE
Gene3D-CATH 2.120.10.30 UniProtKB/Swiss-Prot
  Galactose-binding domain-like UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
  RHS repeat-associated core UniProtKB/Swiss-Prot
InterPro 6-blade_b-propeller_TolB-like UniProtKB/Swiss-Prot
  CarboxyPept-like_regulatory UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  IPR006530 UniProtKB/Swiss-Prot
  Rhs_assc_core UniProtKB/Swiss-Prot
  Ten_N UniProtKB/Swiss-Prot
  Teneurin_domain UniProtKB/Swiss-Prot
  Tox-GHH_dom UniProtKB/Swiss-Prot
MGD MGI:1345183 ENTREZGENE
NCBI Gene 23965 ENTREZGENE
PANTHER PTHR11219:SF65 UniProtKB/Swiss-Prot
  TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/Swiss-Prot
Pfam Ten_N UniProtKB/Swiss-Prot
  Tox-GHH UniProtKB/Swiss-Prot
PhenoGen Tenm3 PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  TENEURIN_N UniProtKB/Swiss-Prot
SMART EGF UniProtKB/Swiss-Prot
Superfamily-SCOP NHL repeat UniProtKB/Swiss-Prot
  SSF49464 UniProtKB/Swiss-Prot
UniProt A0A1D5RM36_MOUSE UniProtKB/TrEMBL
  A0A1D5RM80_MOUSE UniProtKB/TrEMBL
  A0A2K9QKY6 ENTREZGENE
  A0A2K9QKZ0 ENTREZGENE
  A0A2K9QL01 ENTREZGENE
  A0A2K9QL03 ENTREZGENE
  A0A2K9QL04 ENTREZGENE
  A0A2K9QL11 ENTREZGENE
  A0A2K9QL36 ENTREZGENE
  A0A2K9QL87 ENTREZGENE
  B7ZNJ5 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 64 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-09 Tenm3  teneurin transmembrane protein 3  Odz3  odd Oz/ten-m homolog 3 (Drosophila)  Symbol and/or name change 5135510 APPROVED