TENM3 (teneurin transmembrane protein 3) - Rat Genome Database

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Gene: TENM3 (teneurin transmembrane protein 3) Chlorocebus sabaeus
Analyze
Symbol: TENM3
Name: teneurin transmembrane protein 3
RGD ID: 18602748
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); positive regulation of neuron projection development (ortholog); regulation of homophilic cell adhesion (ortholog); ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); presynaptic active zone membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: teneurin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17127,231,840 - 128,792,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7128,598,835 - 128,795,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TENM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17127,231,840 - 128,792,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7128,598,835 - 128,795,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TENM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384181,447,613 - 182,803,024 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4182,143,987 - 182,803,024 (+)EnsemblGRCh38hg38GRCh38
GRCh374183,065,116 - 183,724,177 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364183,482,131 - 183,961,171 (+)NCBINCBI36Build 36hg18NCBI36
Build 344183,539,732 - 183,969,496NCBI
Celera4180,576,661 - 181,055,801 (+)NCBICelera
Cytogenetic Map4q34.3-q35.1NCBI
HuRef4179,000,986 - 179,481,448 (+)NCBIHuRef
CHM1_14183,221,672 - 183,700,754 (+)NCBICHM1_1
T2T-CHM13v2.04184,789,727 - 186,144,894 (+)NCBIT2T-CHM13v2.0
Tenm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,678,700 - 51,370,255 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl848,680,717 - 49,296,986 (-)EnsemblGRCm39 Ensembl
GRCm38848,225,665 - 49,522,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl848,227,682 - 48,843,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37849,311,019 - 49,760,044 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36849,726,501 - 50,173,507 (-)NCBIMGSCv36mm8
Celera850,895,477 - 51,344,899 (-)NCBICelera
Cytogenetic Map8B1.2- B1.3NCBI
cM Map827.02NCBI
Tenm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81647,984,732 - 50,711,352 (+)NCBIGRCr8
mRatBN7.21641,251,909 - 43,978,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1641,252,182 - 43,978,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1648,938,379 - 49,382,048 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01652,298,931 - 52,742,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01647,588,478 - 48,031,955 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01646,422,676 - 46,929,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1646,731,403 - 46,926,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01645,990,922 - 46,657,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41646,648,771 - 47,149,524 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11646,648,894 - 47,146,821 (+)NCBI
Celera1641,552,578 - 41,996,819 (+)NCBICelera
Cytogenetic Map16q11NCBI
Tenm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,923,750 - 26,365,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,920,919 - 26,534,817 (-)NCBIChiLan1.0ChiLan1.0
TENM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23177,814,108 - 180,549,529 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14178,975,800 - 180,909,640 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04173,644,674 - 174,993,218 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14186,559,404 - 187,215,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4186,738,624 - 187,214,394 (+)Ensemblpanpan1.1panPan2
TENM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11647,440,673 - 47,883,311 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,441,348 - 48,044,322 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,441,348 - 48,044,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3435,883,742 - 36,484,794 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01649,668,415 - 50,270,109 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1649,667,658 - 50,270,179 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11647,632,059 - 48,232,872 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01648,244,814 - 48,846,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01648,385,358 - 48,987,162 (-)NCBIUU_Cfam_GSD_1.0
Tenm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494331,100,860 - 31,929,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365546,183,722 - 6,619,982 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365546,180,883 - 6,871,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1543,540,375 - 44,399,711 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11541,818,190 - 44,401,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21550,292,659 - 50,995,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tenm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476913,104,585 - 13,579,136 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476912,831,899 - 13,579,957 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008000337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037987052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000001070   ⟹   ENSCSAP00000014997
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl7128,598,835 - 128,795,211 (+)Ensembl
RefSeq Acc Id: XM_008000337   ⟹   XP_007998528
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,921 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000338   ⟹   XP_007998529
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,921 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000339   ⟹   XP_007998530
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,921 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000340   ⟹   XP_007998531
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,921 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000341   ⟹   XP_007998532
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,922 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000342   ⟹   XP_007998533
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,921 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000343   ⟹   XP_007998534
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,922 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000344   ⟹   XP_007998535
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,443,394 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,628,923 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000345   ⟹   XP_007998536
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17127,231,840 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000346   ⟹   XP_007998537
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,148,068 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,330,618 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000347   ⟹   XP_007998538
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,147,433 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,329,933 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000348   ⟹   XP_007998539
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17127,231,840 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000349   ⟹   XP_007998540
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17127,231,840 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000350   ⟹   XP_007998541
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17127,231,841 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037107,641,371 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000352   ⟹   XP_007998543
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17128,474,269 - 128,792,832 (+)NCBI
Vero_WHO_p1.0NW_023666037108,659,496 - 108,986,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037987052   ⟹   XP_037842980
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037108,510,361 - 108,986,958 (+)NCBI
RefSeq Acc Id: XP_007998536   ⟸   XM_008000345
- Peptide Label: isoform X9
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998539   ⟸   XM_008000348
- Peptide Label: isoform X10
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998540   ⟸   XM_008000349
- Peptide Label: isoform X11
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998541   ⟸   XM_008000350
- Peptide Label: isoform X12
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998538   ⟸   XM_008000347
- Peptide Label: isoform X9
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998537   ⟸   XM_008000346
- Peptide Label: isoform X9
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998528   ⟸   XM_008000337
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998530   ⟸   XM_008000339
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998532   ⟸   XM_008000341
- Peptide Label: isoform X4
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998533   ⟸   XM_008000342
- Peptide Label: isoform X6
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998529   ⟸   XM_008000338
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998531   ⟸   XM_008000340
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998534   ⟸   XM_008000343
- Peptide Label: isoform X7
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998535   ⟸   XM_008000344
- Peptide Label: isoform X8
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998543   ⟸   XM_008000352
- Peptide Label: isoform X14
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014997   ⟸   ENSCSAT00000001070
RefSeq Acc Id: XP_037842980   ⟸   XM_037987052
- Peptide Label: isoform X13
- UniProtKB: A0A0D9S2A8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001070.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  RHS repeat-associated core UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  CarboxyPept-like_regulatory UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  IPR006530 UniProtKB/TrEMBL
  Rhs_assc_core UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Teneurin_domain UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/TrEMBL
NCBI Gene TENM3 ENTREZGENE
PANTHER PTHR11219:SF65 UniProtKB/TrEMBL
  TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/TrEMBL
Pfam Ten_N UniProtKB/TrEMBL
  Tox-GHH UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP NHL repeat UniProtKB/TrEMBL
  SSF49464 UniProtKB/TrEMBL
  YWTD domain UniProtKB/TrEMBL
UniProt A0A0D9S2A8 ENTREZGENE, UniProtKB/TrEMBL