Tenm3 (teneurin transmembrane protein 3) - Rat Genome Database

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Gene: Tenm3 (teneurin transmembrane protein 3) Rattus norvegicus
Analyze
Symbol: Tenm3
Name: teneurin transmembrane protein 3
RGD ID: 1306641
Description: Predicted to have cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and regulation of homophilic cell adhesion. Predicted to localize to integral component of plasma membrane and neuron projection. Orthologous to human TENM3 (teneurin transmembrane protein 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC103693952; LOC306451; odd Oz/ten-m homolog 3; odd Oz/ten-m homolog 3 (Drosophila) ; odz, odd Oz/ten-m homolog 3; odz, odd Oz/ten-m homolog 3 (Drosophila); odz, odd Oz/ten-m homolog 3-like; Odz3; teneurin-3; uncharacterized LOC103693952
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21641,251,909 - 43,978,594 (+)NCBI
Rnor_6.0 Ensembl1646,731,403 - 46,926,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01646,422,676 - 46,929,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01645,990,922 - 46,657,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41646,648,771 - 47,149,524 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11646,648,894 - 47,146,821 (+)NCBI
Celera1641,552,578 - 41,996,819 (+)NCBICelera
Cytogenetic Map16q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:12000766   PMID:17478416   PMID:17803360   PMID:22766609   PMID:23028443   PMID:29414938  


Genomics

Comparative Map Data
Tenm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21641,251,909 - 43,978,594 (+)NCBI
Rnor_6.0 Ensembl1646,731,403 - 46,926,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01646,422,676 - 46,929,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01645,990,922 - 46,657,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41646,648,771 - 47,149,524 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11646,648,894 - 47,146,821 (+)NCBI
Celera1641,552,578 - 41,996,819 (+)NCBICelera
Cytogenetic Map16q11NCBI
TENM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4182,143,987 - 182,803,024 (+)EnsemblGRCh38hg38GRCh38
GRCh384181,447,613 - 182,803,024 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374183,164,555 - 183,724,177 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364183,482,131 - 183,961,171 (+)NCBINCBI36hg18NCBI36
Build 344183,539,732 - 183,969,496NCBI
Celera4180,576,661 - 181,055,801 (+)NCBI
Cytogenetic Map4q34.3-q35.1NCBI
HuRef4179,000,986 - 179,481,448 (+)NCBIHuRef
CHM1_14183,141,138 - 183,700,754 (+)NCBICHM1_1
Tenm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,678,700 - 51,370,255 (-)NCBIGRCm39mm39
GRCm39 Ensembl848,680,717 - 49,296,986 (-)Ensembl
GRCm38848,225,665 - 49,522,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl848,227,682 - 48,843,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37849,311,019 - 49,760,044 (-)NCBIGRCm37mm9NCBIm37
MGSCv36849,726,501 - 50,173,507 (-)NCBImm8
Celera850,895,477 - 51,344,899 (-)NCBICelera
Cytogenetic Map8B1.2- B1.3NCBI
Tenm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,923,750 - 26,365,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,920,919 - 26,534,817 (-)NCBIChiLan1.0ChiLan1.0
TENM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14186,559,404 - 187,215,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4186,738,624 - 187,214,394 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04173,644,674 - 174,993,218 (+)NCBIMhudiblu_PPA_v0panPan3
TENM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11647,440,673 - 47,883,311 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1647,441,348 - 48,044,322 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3435,883,742 - 36,484,794 (+)NCBI
ROS_Cfam_1.01649,668,415 - 50,270,109 (-)NCBI
UMICH_Zoey_3.11647,632,059 - 48,232,872 (-)NCBI
UNSW_CanFamBas_1.01648,244,814 - 48,846,192 (-)NCBI
UU_Cfam_GSD_1.01648,385,358 - 48,987,162 (-)NCBI
Tenm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494331,100,860 - 31,929,099 (+)NCBI
SpeTri2.0NW_0049365546,180,883 - 6,871,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1543,787,465 - 44,399,718 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11541,818,190 - 44,401,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21550,292,659 - 50,995,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TENM3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17127,231,840 - 128,792,832 (+)NCBI
ChlSab1.1 Ensembl7128,598,835 - 128,795,211 (+)Ensembl
Tenm3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476912,831,899 - 13,579,957 (+)NCBI

Position Markers
D18Got81  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21851,122,703 - 51,122,884 (-)MAPPER
Rnor_6.01646,546,073 - 46,546,253NCBIRnor6.0
Rnor_5.01646,278,202 - 46,278,382UniSTSRnor5.0
RGSC_v3.41853,442,433 - 53,442,614RGDRGSC3.4
RGSC_v3.41853,442,434 - 53,442,614UniSTSRGSC3.4
RGSC_v3.11853,503,197 - 53,503,378RGD
Celera1849,253,062 - 49,253,242UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,553,792 - 43,554,013 (+)MAPPER
Rnor_6.01646,448,829 - 46,449,049NCBIRnor6.0
Rnor_5.01646,182,271 - 46,182,491UniSTSRnor5.0
RGSC_v3.41646,688,259 - 46,688,479UniSTSRGSC3.4
Celera1641,579,104 - 41,579,320UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,829,778 - 43,830,026 (+)MAPPER
Rnor_6.01646,779,260 - 46,779,507NCBIRnor6.0
Rnor_5.01646,510,121 - 46,510,368UniSTSRnor5.0
RGSC_v3.41646,994,593 - 46,994,840UniSTSRGSC3.4
Celera1641,853,683 - 41,853,930UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,686,521 - 43,686,825 (+)MAPPER
Rnor_6.01646,634,544 - 46,634,847NCBIRnor6.0
Rnor_5.01646,366,431 - 46,366,734UniSTSRnor5.0
RGSC_v3.41646,847,066 - 46,847,369UniSTSRGSC3.4
Celera1641,711,017 - 41,711,320UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,824,400 - 43,824,694 (+)MAPPER
Rnor_6.01646,773,881 - 46,774,174NCBIRnor6.0
Rnor_5.01646,504,742 - 46,505,035UniSTSRnor5.0
RGSC_v3.41646,989,526 - 46,989,819UniSTSRGSC3.4
Celera1641,848,308 - 41,848,601UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,618,229 - 43,618,508 (+)MAPPER
Rnor_6.01646,566,359 - 46,566,637NCBIRnor6.0
Rnor_5.01646,298,488 - 46,298,766UniSTSRnor5.0
RGSC_v3.41646,778,459 - 46,778,737UniSTSRGSC3.4
Celera1641,642,529 - 41,642,807UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,599,906 - 43,600,121 (+)MAPPER
Rnor_6.01646,494,739 - 46,494,953NCBIRnor6.0
Rnor_5.01646,228,181 - 46,228,395UniSTSRnor5.0
RGSC_v3.41646,760,137 - 46,760,351UniSTSRGSC3.4
Celera1641,624,232 - 41,624,446UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,594,456 - 43,594,666 (+)MAPPER
Rnor_6.01646,489,292 - 46,489,498NCBIRnor6.0
Rnor_5.01646,222,734 - 46,222,940UniSTSRnor5.0
RGSC_v3.41646,754,690 - 46,754,896UniSTSRGSC3.4
Celera1641,618,785 - 41,618,991UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg7  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01646,476,345 - 46,476,588NCBIRnor6.0
Rnor_5.01646,209,787 - 46,210,030UniSTSRnor5.0
RGSC_v3.41646,715,585 - 46,715,828UniSTSRGSC3.4
Celera1641,606,483 - 41,606,653UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,947,081 - 43,947,199 (+)MAPPER
Rnor_6.01646,898,129 - 46,898,246NCBIRnor6.0
Rnor_5.01646,626,601 - 46,626,718UniSTSRnor5.0
RGSC_v3.41647,115,926 - 47,116,043UniSTSRGSC3.4
RGSC_v3.41647,005,869 - 47,005,986UniSTSRGSC3.4
Celera1641,970,211 - 41,970,341UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,574,067 - 43,574,225 (+)MAPPER
Rnor_6.01646,469,292 - 46,469,449NCBIRnor6.0
Rnor_5.01646,202,734 - 46,202,891UniSTSRnor5.0
RGSC_v3.41646,708,532 - 46,708,689UniSTSRGSC3.4
Celera1641,599,431 - 41,599,588UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,892,657 - 43,892,815 (+)MAPPER
Rnor_6.01646,841,870 - 46,842,027NCBIRnor6.0
Rnor_5.01646,573,167 - 46,573,324UniSTSRnor5.0
RGSC_v3.41647,060,270 - 47,060,427UniSTSRGSC3.4
Celera1641,916,355 - 41,916,518UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,865,402 - 43,865,563 (+)MAPPER
Rnor_6.01646,814,464 - 46,814,624NCBIRnor6.0
Rnor_5.01646,545,761 - 46,545,921UniSTSRnor5.0
RGSC_v3.41647,032,557 - 47,032,717UniSTSRGSC3.4
Celera1641,889,306 - 41,889,466UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,826,747 - 43,827,249 (+)MAPPER
Rnor_6.01646,776,228 - 46,776,729NCBIRnor6.0
Rnor_5.01646,507,089 - 46,507,590UniSTSRnor5.0
RGSC_v3.41646,991,873 - 46,992,061UniSTSRGSC3.4
Celera1641,850,655 - 41,851,156UniSTS
Cytogenetic Map16q11UniSTS
D16Nkg12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,811,881 - 43,812,059 (+)MAPPER
Rnor_6.01646,761,125 - 46,761,302NCBIRnor6.0
Rnor_5.01646,491,986 - 46,492,163UniSTSRnor5.0
RGSC_v3.41646,977,007 - 46,977,184UniSTSRGSC3.4
Celera1641,835,793 - 41,835,970UniSTS
Cytogenetic Map16q11UniSTS
AU047302  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21851,113,934 - 51,114,077 (-)MAPPER
Rnor_6.01646,554,877 - 46,555,019NCBIRnor6.0
Rnor_5.01646,287,006 - 46,287,148UniSTSRnor5.0
RGSC_v3.41853,433,668 - 53,433,810UniSTSRGSC3.4
Celera1849,244,296 - 49,244,438UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map16q11UniSTS
RH127800  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,930,704 - 43,930,904 (+)MAPPER
Rnor_6.01646,881,756 - 46,881,955NCBIRnor6.0
Rnor_5.01646,610,228 - 46,610,427UniSTSRnor5.0
RGSC_v3.41647,098,847 - 47,099,046UniSTSRGSC3.4
Celera1641,953,792 - 41,953,991UniSTS
RH 3.4 Map16400.4UniSTS
Cytogenetic Map16q11UniSTS
RH142817  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,598,669 - 43,598,773 (+)MAPPER
Rnor_6.01646,493,502 - 46,493,605NCBIRnor6.0
Rnor_5.01646,226,944 - 46,227,047UniSTSRnor5.0
RGSC_v3.41646,758,900 - 46,759,003UniSTSRGSC3.4
Celera1641,622,995 - 41,623,098UniSTS
RH 3.4 Map16400.7UniSTS
Cytogenetic Map16q11UniSTS
BE096987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,619,317 - 43,619,514 (+)MAPPER
Rnor_6.01646,567,447 - 46,567,643NCBIRnor6.0
Rnor_5.01646,299,576 - 46,299,772UniSTSRnor5.0
RGSC_v3.41646,779,547 - 46,779,743UniSTSRGSC3.4
Celera1641,643,617 - 41,643,813UniSTS
RH 3.4 Map16401.2UniSTS
Cytogenetic Map16q11UniSTS
BF396733  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,953,171 - 43,953,417 (+)MAPPER
Rnor_6.01646,904,218 - 46,904,463NCBIRnor6.0
Rnor_5.01646,632,690 - 46,632,935UniSTSRnor5.0
RGSC_v3.41647,122,015 - 47,122,260UniSTSRGSC3.4
Celera1641,976,313 - 41,976,558UniSTS
RH 3.4 Map16399.7UniSTS
Cytogenetic Map16q11UniSTS
BE113619  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21643,975,924 - 43,976,104 (+)MAPPER
Rnor_6.01646,926,354 - 46,926,533NCBIRnor6.0
Rnor_5.01646,654,826 - 46,655,005UniSTSRnor5.0
RGSC_v3.41647,146,855 - 47,147,034UniSTSRGSC3.4
Celera1641,994,150 - 41,994,329UniSTS
RH 3.4 Map16400.1UniSTS
Cytogenetic Map16q11UniSTS
ha2758  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21851,110,499 - 51,111,133 (-)MAPPER
Rnor_6.01646,557,821 - 46,558,454NCBIRnor6.0
Rnor_5.01646,289,950 - 46,290,583UniSTSRnor5.0
Cytogenetic Map16q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)16109005486162972Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)16155018749247447Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)16155018763210301Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16155018763210301Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)16155018763210301Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)16155018763210301Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16172829746728297Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380250013802Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16501380250169318Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16501380252144919Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16501380264012784Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)162075555680316424Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162484654169846541Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162751998072519980Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162834031573340315Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163530711063909364Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163900002184000021Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164151271086512710Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164151271086512710Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164590509753253355Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164655818890668790Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:185
Interacting mature miRNAs:235
Transcripts:ENSRNOT00000017624
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 4 4 4 70 22 31
Low 3 28 40 24 16 24 8 11 4 13 10 10 8
Below cutoff 1 13 13 3 13 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001169133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017624   ⟹   ENSRNOP00000017625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1646,731,403 - 46,926,245 (+)Ensembl
RefSeq Acc Id: NM_001169133   ⟹   NP_001162604
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21643,527,994 - 43,978,594 (+)NCBI
Rnor_6.01646,423,869 - 46,929,023 (+)NCBI
Rnor_5.01645,990,922 - 46,657,495 (+)NCBI
RGSC_v3.41646,648,771 - 47,149,524 (+)RGD
Celera1641,552,578 - 41,996,819 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253115   ⟹   XP_006253177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,423,837 - 46,929,017 (+)NCBI
Rnor_5.01645,990,922 - 46,657,495 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771244   ⟹   XP_008769466
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,422,676 - 46,929,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771245   ⟹   XP_008769467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,423,837 - 46,929,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600110   ⟹   XP_017455599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,423,837 - 46,929,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600111   ⟹   XP_017455600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,423,837 - 46,929,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600112   ⟹   XP_017455601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,423,837 - 46,929,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600113   ⟹   XP_017455602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01646,699,540 - 46,929,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094506   ⟹   XP_038950434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,910 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094507   ⟹   XP_038950435
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,910 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094508   ⟹   XP_038950436
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21643,359,163 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094509   ⟹   XP_038950437
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21643,365,819 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094510   ⟹   XP_038950438
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,910 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094511   ⟹   XP_038950439
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,909 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094512   ⟹   XP_038950440
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,910 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094513   ⟹   XP_038950441
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,910 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094514   ⟹   XP_038950442
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,911 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094515   ⟹   XP_038950443
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,911 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094516   ⟹   XP_038950444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21641,251,911 - 43,978,588 (+)NCBI
RefSeq Acc Id: XM_039094517   ⟹   XP_038950445
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21643,644,181 - 43,978,588 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001162604   ⟸   NM_001169133
- Sequence:
RefSeq Acc Id: XP_006253177   ⟸   XM_006253115
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008769466   ⟸   XM_008771244
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769467   ⟸   XM_008771245
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455599   ⟸   XM_017600110
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017455600   ⟸   XM_017600111
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017455601   ⟸   XM_017600112
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017455602   ⟸   XM_017600113
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSRNOP00000017625   ⟸   ENSRNOT00000017624
RefSeq Acc Id: XP_038950439   ⟸   XM_039094511
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950434   ⟸   XM_039094506
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950441   ⟸   XM_039094513
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950438   ⟸   XM_039094510
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950440   ⟸   XM_039094512
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950435   ⟸   XM_039094507
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950442   ⟸   XM_039094514
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038950443   ⟸   XM_039094515
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038950444   ⟸   XM_039094516
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038950436   ⟸   XM_039094508
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950437   ⟸   XM_039094509
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950445   ⟸   XM_039094517
- Peptide Label: isoform X9
Protein Domains
EGF-like   Teneurin N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306641 AgrOrtholog
Ensembl Genes ENSRNOG00000012802 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017625 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017624 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  CarboxyPept-like_regulatory UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  IPR006530 UniProtKB/TrEMBL
  Quinoprot_gluc/sorb_DH UniProtKB/TrEMBL
  Rhs_assc_core UniProtKB/TrEMBL
  Ten-3/4 UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/TrEMBL
NCBI Gene 306451 ENTREZGENE
PANTHER PTHR11219:SF65 UniProtKB/TrEMBL
Pfam Ten_N UniProtKB/TrEMBL
  Tox-GHH UniProtKB/TrEMBL
PhenoGen Tenm3 PhenoGen
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP CarboxypepD_reg UniProtKB/TrEMBL
  SSF50952 UniProtKB/TrEMBL
TIGRFAMs Rhs_assc_core UniProtKB/TrEMBL
  YD_repeat_2x UniProtKB/TrEMBL
UniProt F1LV44_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tenm3  teneurin transmembrane protein 3  LOC103693952  uncharacterized LOC103693952  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103693952  uncharacterized LOC103693952      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Tenm3  teneurin transmembrane protein 3  LOC100361541  odz, odd Oz/ten-m homolog 3-like  Data Merged 1643240 APPROVED
2012-10-11 Tenm3  teneurin transmembrane protein 3  Odz3  odz, odd Oz/ten-m homolog 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361541  odz, odd Oz/ten-m homolog 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-09 Odz3  odz, odd Oz/ten-m homolog 3 (Drosophila)  Odz3  odd Oz/ten-m homolog 3 (Drosophila)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Odz3  odd Oz/ten-m homolog 3 (Drosophila)   Odz3_predicted  odd Oz/ten-m homolog 3 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Odz3_predicted  odd Oz/ten-m homolog 3 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED