TTC7A (tetratricopeptide repeat domain 7A) - Rat Genome Database

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Gene: TTC7A (tetratricopeptide repeat domain 7A) Homo sapiens
Analyze
Symbol: TTC7A
Name: tetratricopeptide repeat domain 7A
RGD ID: 1314700
HGNC Page HGNC:19750
Description: Involved in protein localization to plasma membrane. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Implicated in multiple intestinal atresia.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: GIDID; MGC131720; MGC134830; MINAT; tetratricopeptide repeat domain 7; tetratricopeptide repeat protein 7A; TPR repeat protein 7A; TTC7
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38246,915,866 - 47,076,123 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl246,915,869 - 47,076,137 (+)EnsemblGRCh38hg38GRCh38
GRCh37247,143,005 - 47,303,262 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36247,021,817 - 47,156,779 (+)NCBINCBI36Build 36hg18NCBI36
Celera247,007,266 - 47,142,129 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef246,906,000 - 47,040,351 (+)NCBIHuRef
CHM1_1247,098,597 - 47,233,491 (+)NCBICHM1_1
T2T-CHM13v2.0246,920,640 - 47,080,920 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 72 rows
Object Symbol
Species
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Evidence
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Original Reference(s)
TTC7AHumancommon variable immunodeficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Common variable immunodeficiencyClinVarPMID:25741868 more ...
TTC7AHumancommon variable immunodeficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Common variable immunodeficiencyClinVarPMID:17576681 more ...
TTC7AHumanGastrointestinal defects and immunodeficiency syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal defects and immunodeficiency syndromeClinVarPMID:23830146 more ...
TTC7AHumanGastrointestinal defects and immunodeficiency syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal defects and immunodeficiency syndromeClinVarPMID:23423984 more ...
TTC7AHumanGastrointestinal defects and immunodeficiency syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal defects and immunodeficiency syndromeClinVarPMID:25741868 and PMID:28492532
TTC7AHumanGastrointestinal defects and immunodeficiency syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal defects and immunodeficiency syndromeClinVar 
TTC7AHumanGastrointestinal defects and immunodeficiency syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal defects and immunodeficiency syndromeClinVarPMID:24417819 more ...
TTC7AHumanGastrointestinal defects and immunodeficiency syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal defects and immunodeficiency syndromeClinVarPMID:16199547 more ...
TTC7AHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
TTC7AHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
TTC7AHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
TTC7AHumanLynch syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasmsClinVarPMID:28492532
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:17576681 more ...
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Multiple gastrointestinal atresiasClinVarPMID:23830146 more ...
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple gastrointestinal atresiasClinVarPMID:23830146 more ...
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple gastrointestinal atresiasClinVarPMID:23830146 more ...
TTC7AHumanmultiple intestinal atresia  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
1 to 20 of 72 rows
Object Symbol
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Original Reference(s)
TTC7AHumanmultiple intestinal atresia  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
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Original Reference(s)
TTC7AHumanpsoriasis  ISSTtc7 (Mus musculus)13592920OMIM:177900 more ...MouseDO 
Object Symbol
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Original Reference(s)
TTC7AHumanmultiple intestinal atresia  IAGP 7240710 OMIM 

1 to 20 of 73 rows

  
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Original Reference(s)
TTC7AHuman1,2-dimethylhydrazine increases expressionISOTtc7 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of TTC7 mRNACTDPMID:22206623
TTC7AHuman1,2-dimethylhydrazine multiple interactionsISOTtc7 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TTC7 mRNACTDPMID:22206623
TTC7AHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOTtc7 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of TTC7 mRNACTDPMID:19933214
TTC7AHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTtc7 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of TTC7 mRNACTDPMID:28213091
TTC7AHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTtc7 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to TTC7 gene]CTDPMID:28213091
TTC7AHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTtc7 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TTC7 mRNACTDPMID:21570461
TTC7AHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOTtc7a (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of TTC7 mRNA and Tetrachlorodibenzodioxin results in decreased expression of TTC7A mRNACTDPMID:21215274 and PMID:33387578
TTC7AHuman3,3',4,4'-tetrachlorobiphenyl multiple interactionsISOTtc7 (Mus musculus)64804643 more ...CTDPMID:19467301
TTC7AHuman4,4'-sulfonyldiphenol decreases expressionISOTtc7 (Mus musculus)6480464bisphenol S results in decreased expression of TTC7 mRNACTDPMID:39298647
TTC7AHuman4,4'-sulfonyldiphenol affects methylationISOTtc7 (Mus musculus)6480464bisphenol S affects the methylation of TTC7 geneCTDPMID:31683443
TTC7AHuman5-aza-2'-deoxycytidine multiple interactionsEXP 6480464Decitabine inhibits the reaction [Smoke results in decreased expression of TTC7 mRNA]CTDPMID:21095227
TTC7AHuman6-propyl-2-thiouracil decreases expressionISOTtc7a (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of TTC7A mRNACTDPMID:30047161
TTC7AHumanacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of TTC7A mRNACTDPMID:32763439
TTC7AHumanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of TTC7A intron and Aflatoxin B1 results in decreased methylation of TTC7A promoterCTDPMID:30157460
TTC7AHumanAflatoxin B2 alpha decreases methylationEXP 6480464aflatoxin B2 results in decreased methylation of TTC7A intronCTDPMID:30157460
TTC7AHumanamitrole decreases expressionISOTtc7a (Rattus norvegicus)6480464Amitrole results in decreased expression of TTC7A mRNACTDPMID:30047161
TTC7AHumanarsane affects expressionEXP 6480464Arsenic affects the expression of TTC7A mRNACTDPMID:18414638
TTC7AHumanarsenic atom affects expressionEXP 6480464Arsenic affects the expression of TTC7A mRNACTDPMID:18414638
TTC7AHumanatrazine affects methylationISOTtc7a (Rattus norvegicus)6480464Atrazine affects the methylation of TTC7A geneCTDPMID:35440735
TTC7AHumanbenzo[a]pyrene multiple interactionsISOTtc7 (Mus musculus)6480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of TTC7 mRNACTDPMID:27858113

1 to 20 of 73 rows

Biological Process

  
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Original Reference(s)
TTC7AHumanhemopoiesis acts_upstream_of_or_withinIEAUniProtKB:Q8BGB2 and ensembl:ENSMUSP00000040771150520179 EnsemblGO_REF:0000107
TTC7AHumanintracellular iron ion homeostasis acts_upstream_of_or_withinIEAUniProtKB:Q8BGB2 and ensembl:ENSMUSP00000040771150520179 EnsemblGO_REF:0000107
TTC7AHumanphosphatidylinositol phosphate biosynthetic process involved_inIBAPANTHER:PTN001131908 and UniProtKB:Q86TV6150520179 GO_CentralGO_REF:0000033
TTC7AHumanprotein localization to plasma membrane involved_inIDA 150520179 PMID:23229899UniProtPMID:23229899
TTC7AHumanprotein localization to plasma membrane involved_inIBAPANTHER:PTN001131908 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TTC7AHumancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
TTC7AHumancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
TTC7AHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
TTC7AHumanplasma membrane is_active_inIBAPANTHER:PTN001131908 and UniProtKB:Q86TV6150520179 GO_CentralGO_REF:0000033
TTC7AHumanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
TTC7AHumanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
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Original Reference(s)
TTC7AHumanprotein binding enablesIPIUniProtKB:O95071150520179 PMID:24417819 and PMID:33122718IntActPMID:24417819 and PMID:33122718

1 to 20 of 70 rows
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
TTC7AHumanAbdominal distention  IAGP 8699517 HPOORPHA:436252
TTC7AHumanAbnormal ductus choledochus morphology  IAGP 8699517 HPOORPHA:436252
TTC7AHumanAbsent eyebrow  IAGP 8699517 HPOORPHA:436252
TTC7AHumanAgammaglobulinemia  IAGP 8699517 HPOMIM:243150
TTC7AHumanAlopecia of scalp  IAGP 8699517 HPOORPHA:436252
TTC7AHumanAutoimmune hemolytic anemia  IAGP 8699517 HPOMIM:243150
TTC7AHumanAutoimmune hemolytic anemia  IAGP 8699517 HPOORPHA:436252
TTC7AHumanAutoimmunity  IAGP 8699517 HPOMIM:243150
TTC7AHumanAutoimmunity  IAGP 8699517 HPOORPHA:436252
TTC7AHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:243150
TTC7AHumanBloody diarrhea  IAGP 8699517 HPOMIM:243150
TTC7AHumanBloody diarrhea  IAGP 8699517 HPOORPHA:436252
TTC7AHumanColonic atresia  IAGP 8699517 HPOMIM:243150
TTC7AHumanCongenital onset  IAGP 8699517 HPOMIM:243150
TTC7AHumanCongenital pulmonary airway malformation  IAGP 8699517 HPOORPHA:436252
TTC7AHumanCongenital pulmonary airway malformation  IAGP 8699517 HPOMIM:243150
TTC7AHumanDeath in childhood  IAGP 8699517 HPOMIM:243150
TTC7AHumanDeath in infancy  IAGP 8699517 HPOMIM:243150
TTC7AHumanDecreased circulating antibody concentration  IAGP 8699517 HPOMIM:243150
TTC7AHumanDuodenal atresia  IAGP 8699517 HPOMIM:243150
1 to 20 of 70 rows
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Original Reference(s)
TTC7AHumanSevere combined immunodeficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Severe combined immunodeficiencyClinVar 

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:8889548   PMID:10574461   PMID:12168954   PMID:12477932   PMID:14702039   PMID:15489334   PMID:15718100   PMID:16344560   PMID:17081983   PMID:19898481   PMID:20339536   PMID:20932654  
PMID:21873635   PMID:23229899   PMID:23423984   PMID:23830146   PMID:24162774   PMID:24292712   PMID:24417819   PMID:25174867   PMID:25468996   PMID:25745186   PMID:26496610   PMID:26760575  
PMID:27059536   PMID:27418642   PMID:28514442   PMID:29117863   PMID:29174094   PMID:29884807   PMID:30350797   PMID:30553809   PMID:31753913   PMID:31814065   PMID:32513696   PMID:33122718  
PMID:33637726   PMID:33961781   PMID:34315543   PMID:34373451   PMID:34975848   PMID:34985046   PMID:35063084   PMID:35271311   PMID:35474131   PMID:35944360   PMID:36897256   PMID:37390900  



TTC7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38246,915,866 - 47,076,123 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl246,915,869 - 47,076,137 (+)EnsemblGRCh38hg38GRCh38
GRCh37247,143,005 - 47,303,262 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36247,021,817 - 47,156,779 (+)NCBINCBI36Build 36hg18NCBI36
Celera247,007,266 - 47,142,129 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef246,906,000 - 47,040,351 (+)NCBIHuRef
CHM1_1247,098,597 - 47,233,491 (+)NCBICHM1_1
T2T-CHM13v2.0246,920,640 - 47,080,920 (+)NCBIT2T-CHM13v2.0
Ttc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,590,328 - 87,689,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1787,590,314 - 87,689,197 (+)EnsemblGRCm39 Ensembl
GRCm381787,282,808 - 87,381,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1787,282,886 - 87,381,769 (+)EnsemblGRCm38mm10GRCm38
MGSCv371787,682,226 - 87,781,110 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361787,191,212 - 87,290,084 (+)NCBIMGSCv36mm8
Celera1791,677,067 - 91,778,687 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1757.12NCBI
Ttc7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8612,912,822 - 13,015,374 (-)NCBIGRCr8
mRatBN7.267,159,285 - 7,261,826 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,159,061 - 7,261,892 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx67,439,527 - 7,542,905 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.067,748,955 - 7,852,331 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.067,276,069 - 7,379,452 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0610,912,383 - 11,014,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,912,383 - 11,014,278 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0620,900,225 - 21,009,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,787,530 - 10,895,027 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1610,778,700 - 10,893,371 (+)NCBI
Celera66,909,144 - 7,010,415 (-)NCBICelera
Cytogenetic Map6q12NCBI
Ttc7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544113,793,216 - 13,916,423 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544113,804,791 - 13,915,969 (+)NCBIChiLan1.0ChiLan1.0
TTC7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21279,315,262 - 79,473,978 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A79,319,229 - 79,477,945 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A47,031,859 - 47,190,995 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A47,987,193 - 48,121,083 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A47,963,094 - 48,121,083 (+)Ensemblpanpan1.1panPan2
TTC7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11049,102,256 - 49,246,663 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1049,129,584 - 49,314,495 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1048,955,524 - 49,100,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01049,972,255 - 50,117,119 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1049,972,346 - 50,116,956 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11049,680,225 - 49,823,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01049,970,061 - 50,112,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01050,153,848 - 50,298,738 (+)NCBIUU_Cfam_GSD_1.0
Ttc7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629233,847,170 - 33,961,590 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365085,275,758 - 5,390,223 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365085,275,779 - 5,390,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,457,625 - 93,591,941 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,457,623 - 93,591,982 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2399,602,173 - 99,646,143 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,117,116 - 60,271,937 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1460,118,750 - 60,250,167 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604551,572,062 - 51,729,472 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473828,355,121 - 28,472,733 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473828,355,161 - 28,472,733 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in TTC7A
1040 total Variants

1 to 10 of 141 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670405)x3 copy number gain See cases [RCV000050445] Chr21:7749532..46670405 [GRCh38]
Chr21:15499847..48090317 [GRCh37]
Chr21:14421718..46914745 [NCBI36]
Chr21:21p11.2-q22.3
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 21q22.13-22.3(chr21:37135738-42434515)x1 copy number loss See cases [RCV000051047] Chr21:37135738..42434515 [GRCh38]
Chr21:38508038..43854625 [GRCh37]
Chr21:37429908..42727694 [NCBI36]
Chr21:21q22.13-22.3
pathogenic
GRCh37/hg19 21q22.1-22.3(chr21:35527952-44298520)x1 copy number loss See cases [RCV000052807] Chr21:35527952..44298520 [GRCh37]
Chr21:34449822..43171589 [NCBI36]
Chr21:21q22.1-22.3
pathogenic
GRCh38/hg38 21q22.12-22.3(chr21:35027972-46670405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052836]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052836]|See cases [RCV000052836] Chr21:35027972..46670405 [GRCh38]
Chr21:36400269..48090317 [GRCh37]
Chr21:35322139..46914745 [NCBI36]
Chr21:21q22.12-22.3
pathogenic
GRCh38/hg38 21q22.13-22.3(chr21:38273492-46670405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052838]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052838]|See cases [RCV000052838] Chr21:38273492..46670405 [GRCh38]
Chr21:39645414..48090317 [GRCh37]
Chr21:38567284..46914745 [NCBI36]
Chr21:21q22.13-22.3
pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053042] Chr21:7749532..46623792 [GRCh38]
Chr21:14595524..48043704 [GRCh37]
Chr21:13517395..46868132 [NCBI36]
Chr21:21p11.2-q22.3
pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053043] Chr21:7749532..46623792 [GRCh38]
Chr21:14629063..48043704 [GRCh37]
Chr21:13550934..46868132 [NCBI36]
Chr21:21p11.2-q22.3
pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670546)x3 copy number gain See cases [RCV000053045] Chr21:7749532..46670546 [GRCh38]
Chr21:15499647..48090458 [GRCh37]
Chr21:14421518..46914886 [NCBI36]
Chr21:21p11.2-q22.3
pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46661140)x3 copy number gain See cases [RCV000053065] Chr21:7749532..46661140 [GRCh38]
Chr21:15499647..48081052 [GRCh37]
Chr21:14421518..46905480 [NCBI36]
Chr21:21p11.2-q22.3
pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46661140)x3 copy number gain See cases [RCV000053067] Chr21:7749532..46661140 [GRCh38]
Chr21:15499847..48081052 [GRCh37]
Chr21:14421718..46905480 [NCBI36]
Chr21:21p11.2-q22.3
pathogenic
1 to 10 of 141 rows

Predicted Target Of
Summary Value
Count of predictions:8260
Count of miRNA genes:1249
Interacting mature miRNAs:1646
Transcripts:ENST00000263737, ENST00000319190, ENST00000394850, ENST00000409245, ENST00000409825, ENST00000440051, ENST00000441914, ENST00000461601, ENST00000474321, ENST00000484061, ENST00000484337, ENST00000491786, ENST00000496991, ENST00000536057
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407048419GWAS697395_Hresponse to statin QTL GWAS697395 (human)0.000002response to statin24700270047002701Human
597115126GWAS1211200_Hmean reticulocyte volume QTL GWAS1211200 (human)2e-08reticulocyte morphology trait (VT:0002424)mean corpuscular volume (CMO:0000038)24701139147011392Human
597578426GWAS1635286_Hprothrombin time measurement QTL GWAS1635286 (human)4e-11blood coagulation trait (VT:0002551)prothrombin time (CMO:0000211)24692251946922520Human
407027815GWAS676791_Hresponse to radiation, prostate carcinoma, erectile dysfunction QTL GWAS676791 (human)0.0000005response to radiation, prostate carcinoma, erectile dysfunction24701287347012874Human
597599414GWAS1656274_Hprothrombin time measurement QTL GWAS1656274 (human)4e-12blood coagulation trait (VT:0002551)prothrombin time (CMO:0000211)24692515246925153Human
597094495GWAS1190569_H3-hydroxy-1-methylpropylmercapturic acid measurement QTL GWAS1190569 (human)0.00000053-hydroxy-1-methylpropylmercapturic acid measurement24700929747009298Human
597521489GWAS1617563_Hbody fat percentage QTL GWAS1617563 (human)4e-09body fat mass (VT:0010482)body fat percentage (CMO:0000302)24705636347056364Human
597578963GWAS1635823_Hprothrombin time measurement QTL GWAS1635823 (human)1e-11blood coagulation trait (VT:0002551)prothrombin time (CMO:0000211)24692515246925153Human
597279732GWAS1375806_Heducational attainment QTL GWAS1375806 (human)9e-11educational attainment24700779847007799Human
597244116GWAS1340190_Hprogression free survival, response to carboplatin, ovarian serous carcinoma, trait in response to paclitaxel QTL GWAS1340190 (human)0.000004progression free survival, response to carboplatin, ovarian serous carcinoma, trait in response to paclitaxelsurvival measurement (CMO:0001021)24701108947011090Human

1 to 10 of 22 rows
D2S2227  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,269,702 - 47,269,910UniSTSGRCh37
Build 36247,123,206 - 47,123,414RGDNCBI36
Celera247,108,562 - 47,108,770RGD
Cytogenetic Map2p21UniSTS
HuRef247,006,780 - 47,006,988UniSTS
Marshfield Genetic Map271.14RGD
Marshfield Genetic Map271.14UniSTS
Genethon Genetic Map274.6UniSTS
TNG Radiation Hybrid Map210758.0UniSTS
Whitehead-YAC Contig Map2 UniSTS
RH69939  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375148,978,115 - 148,978,240UniSTSGRCh37
GRCh37247,302,528 - 47,302,653UniSTSGRCh37
Build 36247,156,032 - 47,156,157RGDNCBI36
Celera5145,060,032 - 145,060,157UniSTS
Celera247,141,382 - 47,141,507RGD
Cytogenetic Map5q32UniSTS
Cytogenetic Map2p21UniSTS
HuRef5144,124,751 - 144,124,876UniSTS
HuRef247,039,604 - 47,039,729UniSTS
RH93668  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,303,044 - 47,303,166UniSTSGRCh37
Build 36247,156,548 - 47,156,670RGDNCBI36
Celera247,141,898 - 47,142,020RGD
Cytogenetic Map2p21UniSTS
HuRef247,040,120 - 47,040,242UniSTS
GeneMap99-GB4 RH Map2140.45UniSTS
SHGC-79084  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,282,511 - 47,282,709UniSTSGRCh37
Build 36247,136,015 - 47,136,213RGDNCBI36
Celera247,121,371 - 47,121,569RGD
Cytogenetic Map2p21UniSTS
HuRef247,019,587 - 47,019,785UniSTS
TNG Radiation Hybrid Map210763.0UniSTS
RH102114  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,278,055 - 47,278,179UniSTSGRCh37
Build 36247,131,559 - 47,131,683RGDNCBI36
Celera247,116,915 - 47,117,039RGD
Cytogenetic Map2p21UniSTS
HuRef247,015,133 - 47,015,257UniSTS
GeneMap99-GB4 RH Map2142.44UniSTS
SHGC-78032  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,296,758 - 47,297,080UniSTSGRCh37
Build 36247,150,262 - 47,150,584RGDNCBI36
Celera247,135,611 - 47,135,933RGD
Cytogenetic Map2p21UniSTS
HuRef247,033,833 - 47,034,155UniSTS
RH15945  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,295,753 - 47,295,927UniSTSGRCh37
Build 36247,149,257 - 47,149,431RGDNCBI36
Celera247,134,614 - 47,134,788RGD
Cytogenetic Map2p21UniSTS
HuRef247,032,829 - 47,033,003UniSTS
GeneMap99-GB4 RH Map2142.44UniSTS
NCBI RH Map2291.6UniSTS
Clen32  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37247,214,912 - 47,215,125UniSTSGRCh37
Celera247,053,774 - 47,053,987UniSTS
HuRef246,952,109 - 46,952,322UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2433 2788 2245 4947 1723 2346 5 622 1949 464 2268 7286 6457 52 3713 848 1734 1613 171


1 to 30 of 58 rows
RefSeq Transcripts NG_034143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005264439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 58 rows

Ensembl Acc Id: ENST00000319190   ⟹   ENSP00000316699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,941,224 - 47,076,123 (+)Ensembl
Ensembl Acc Id: ENST00000394850   ⟹   ENSP00000378320
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,941,286 - 47,075,324 (+)Ensembl
Ensembl Acc Id: ENST00000409245   ⟹   ENSP00000386307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,916,157 - 47,074,048 (+)Ensembl
Ensembl Acc Id: ENST00000409825   ⟹   ENSP00000386521
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,950,421 - 47,076,137 (+)Ensembl
Ensembl Acc Id: ENST00000440051   ⟹   ENSP00000401467
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,005,932 - 47,049,980 (+)Ensembl
Ensembl Acc Id: ENST00000441914   ⟹   ENSP00000393022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,941,543 - 47,073,923 (+)Ensembl
Ensembl Acc Id: ENST00000461601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,941,275 - 47,050,025 (+)Ensembl
Ensembl Acc Id: ENST00000474321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,978,118 - 47,005,994 (+)Ensembl
Ensembl Acc Id: ENST00000484061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,994,231 - 47,075,324 (+)Ensembl
Ensembl Acc Id: ENST00000484337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,034,155 - 47,060,956 (+)Ensembl
Ensembl Acc Id: ENST00000491786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,978,740 - 47,075,557 (+)Ensembl
Ensembl Acc Id: ENST00000496991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,046,315 - 47,050,827 (+)Ensembl
Ensembl Acc Id: ENST00000651101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,008,545 - 47,076,106 (+)Ensembl
Ensembl Acc Id: ENST00000651415
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,008,702 - 47,076,112 (+)Ensembl
Ensembl Acc Id: ENST00000652236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,007,004 - 47,075,432 (+)Ensembl
Ensembl Acc Id: ENST00000652568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,008,702 - 47,075,537 (+)Ensembl
Ensembl Acc Id: ENST00000698499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,915,869 - 46,920,222 (+)Ensembl
Ensembl Acc Id: ENST00000698500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,915,869 - 47,076,100 (+)Ensembl
Ensembl Acc Id: ENST00000698501
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,916,167 - 46,951,210 (+)Ensembl
Ensembl Acc Id: ENST00000698502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl246,916,413 - 46,950,969 (+)Ensembl
Ensembl Acc Id: ENST00000698503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,027,577 - 47,076,106 (+)Ensembl
Ensembl Acc Id: ENST00000698504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl247,029,314 - 47,073,796 (+)Ensembl
RefSeq Acc Id: NM_001288951   ⟹   NP_001275880
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,076,123 (+)NCBI
HuRef246,880,523 - 47,040,351 (+)NCBI
CHM1_1247,098,597 - 47,233,491 (+)NCBI
T2T-CHM13v2.0246,946,000 - 47,080,920 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001288953   ⟹   NP_001275882
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,915,866 - 47,076,123 (+)NCBI
HuRef246,880,523 - 47,040,351 (+)NCBI
CHM1_1247,073,538 - 47,233,491 (+)NCBI
T2T-CHM13v2.0246,920,640 - 47,080,920 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001288955   ⟹   NP_001275884
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,076,123 (+)NCBI
HuRef246,880,523 - 47,040,351 (+)NCBI
CHM1_1247,098,597 - 47,233,491 (+)NCBI
T2T-CHM13v2.0246,946,000 - 47,080,920 (+)NCBI
Sequence:
RefSeq Acc Id: NM_020458   ⟹   NP_065191
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,076,123 (+)NCBI
GRCh37247,168,313 - 47,303,275 (+)RGD
GRCh37247,168,313 - 47,303,275 (+)NCBI
Build 36247,021,817 - 47,156,779 (+)NCBI Archive
Celera247,007,266 - 47,142,129 (+)RGD
HuRef246,880,523 - 47,040,351 (+)NCBI
CHM1_1247,098,597 - 47,233,491 (+)NCBI
T2T-CHM13v2.0246,946,000 - 47,080,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532999   ⟹   XP_011531301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,051,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533000   ⟹   XP_011531302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,978,118 - 47,076,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011533001   ⟹   XP_011531303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38247,005,235 - 47,076,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017004524   ⟹   XP_016860013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,076,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017004525   ⟹   XP_016860014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,944,399 - 47,076,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017004526   ⟹   XP_016860015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,076,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024453013   ⟹   XP_024308781
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,998,765 - 47,076,123 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047445145   ⟹   XP_047301101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,956,839 - 47,076,123 (+)NCBI
RefSeq Acc Id: XM_047445146   ⟹   XP_047301102
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,076,123 (+)NCBI
RefSeq Acc Id: XM_047445147   ⟹   XP_047301103
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,046,237 (+)NCBI
RefSeq Acc Id: XM_047445148   ⟹   XP_047301104
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,916,486 - 47,076,123 (+)NCBI
RefSeq Acc Id: XM_047445149   ⟹   XP_047301105
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,046,368 (+)NCBI
RefSeq Acc Id: XM_047445150   ⟹   XP_047301106
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,024,328 (+)NCBI
RefSeq Acc Id: XM_054343089   ⟹   XP_054199064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343090   ⟹   XP_054199065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,949,934 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343091   ⟹   XP_054199066
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343092   ⟹   XP_054199067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,961,616 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343093   ⟹   XP_054199068
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343094   ⟹   XP_054199069
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,056,035 (+)NCBI
RefSeq Acc Id: XM_054343095   ⟹   XP_054199070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,051,026 (+)NCBI
RefSeq Acc Id: XM_054343096   ⟹   XP_054199071
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,921,260 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343097   ⟹   XP_054199072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,051,157 (+)NCBI
RefSeq Acc Id: XM_054343098   ⟹   XP_054199073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,982,625 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343099   ⟹   XP_054199074
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0247,003,554 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343100   ⟹   XP_054199075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0247,010,024 - 47,080,920 (+)NCBI
RefSeq Acc Id: XM_054343101   ⟹   XP_054199076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,029,117 (+)NCBI
RefSeq Acc Id: XR_007078570
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,224 - 47,060,827 (+)NCBI
RefSeq Acc Id: XR_008486460
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0246,946,000 - 47,065,619 (+)NCBI
1 to 30 of 48 rows
Protein RefSeqs NP_001275880 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275882 (Get FASTA)   NCBI Sequence Viewer  
  NP_001275884 (Get FASTA)   NCBI Sequence Viewer  
  NP_065191 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531301 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531302 (Get FASTA)   NCBI Sequence Viewer  
  XP_011531303 (Get FASTA)   NCBI Sequence Viewer  
  XP_016860013 (Get FASTA)   NCBI Sequence Viewer  
  XP_016860014 (Get FASTA)   NCBI Sequence Viewer  
  XP_016860015 (Get FASTA)   NCBI Sequence Viewer  
  XP_024308781 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301101 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301102 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301103 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301104 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301105 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301106 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199064 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199065 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199066 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199067 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199068 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199069 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199070 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199071 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199072 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199073 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199074 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199075 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199076 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 48 rows
1 to 5 of 36 rows
1 to 5 of 36 rows
RefSeq Acc Id: NP_065191   ⟸   NM_020458
- Peptide Label: isoform 2
- UniProtKB: Q8ND67 (UniProtKB/Swiss-Prot),   Q6PIX4 (UniProtKB/Swiss-Prot),   Q2T9J9 (UniProtKB/Swiss-Prot),   Q9BUS3 (UniProtKB/Swiss-Prot),   Q9ULT0 (UniProtKB/Swiss-Prot),   B3KPK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275882   ⟸   NM_001288953
- Peptide Label: isoform 3
- UniProtKB: B3KPK7 (UniProtKB/TrEMBL),   G5E9G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275880   ⟸   NM_001288951
- Peptide Label: isoform 1
- UniProtKB: B3KPK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275884   ⟸   NM_001288955
- Peptide Label: isoform 4
- UniProtKB: I6L9J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011531301   ⟸   XM_011532999
- Peptide Label: isoform X6
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ULT0-F1-model_v2 AlphaFold Q9ULT0 1-858 view protein structure

RGD ID:6860246
Promoter ID:EPDNEW_H3288
Type:initiation region
Name:TTC7A_4
Description:tetratricopeptide repeat domain 7A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3286  EPDNEW_H3289  EPDNEW_H3290  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,916,152 - 46,916,212EPDNEW
RGD ID:6860248
Promoter ID:EPDNEW_H3289
Type:initiation region
Name:TTC7A_1
Description:tetratricopeptide repeat domain 7A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3286  EPDNEW_H3288  EPDNEW_H3290  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,229 - 46,941,289EPDNEW
RGD ID:6860250
Promoter ID:EPDNEW_H3290
Type:initiation region
Name:TTC7A_3
Description:tetratricopeptide repeat domain 7A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3286  EPDNEW_H3288  EPDNEW_H3289  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38246,941,502 - 46,941,562EPDNEW
RGD ID:6798386
Promoter ID:HG_KWN:32536
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000263737,   NM_020458,   UC002RVN.1,   UC010FBB.1,   UC010FBC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36247,020,911 - 47,021,997 (+)MPROMDB
RGD ID:6798364
Promoter ID:HG_KWN:32539
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000329705,   UC002RVQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36247,058,781 - 47,059,542 (+)MPROMDB
RGD ID:6798371
Promoter ID:HG_KWN:32541
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000329706
Position:
Human AssemblyChrPosition (strand)Source
Build 36247,086,331 - 47,086,831 (+)MPROMDB
RGD ID:6798372
Promoter ID:HG_KWN:32542
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:OTTHUMT00000329707
Position:
Human AssemblyChrPosition (strand)Source
Build 36247,114,671 - 47,115,171 (+)MPROMDB


1 to 40 of 46 rows
Database
Acc Id
Source(s)
COSMIC TTC7A COSMIC
Ensembl Genes ENSG00000068724 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000319190 ENTREZGENE
  ENST00000319190.11 UniProtKB/Swiss-Prot
  ENST00000394850 ENTREZGENE
  ENST00000394850.6 UniProtKB/Swiss-Prot
  ENST00000409245 ENTREZGENE
  ENST00000491786 ENTREZGENE
  ENST00000651415 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
GTEx ENSG00000068724 GTEx
HGNC ID HGNC:19750 ENTREZGENE
Human Proteome Map TTC7A Human Proteome Map
InterPro Endocytosis_PI4K-reg_protein UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  TPR_repeat UniProtKB/Swiss-Prot
  TTC7_N UniProtKB/Swiss-Prot
KEGG Report hsa:57217 UniProtKB/Swiss-Prot
NCBI Gene 57217 ENTREZGENE
OMIM 609332 OMIM
PANTHER PTHR23083:SF475 UniProtKB/Swiss-Prot
  TETRATRICOPEPTIDE REPEAT PROTEIN, TPR UniProtKB/Swiss-Prot
Pfam TPR_8 UniProtKB/Swiss-Prot
  TTC7_N UniProtKB/Swiss-Prot
PharmGKB PA134993362 PharmGKB
PROSITE TPR UniProtKB/Swiss-Prot
  TPR_REGION UniProtKB/Swiss-Prot
SMART TPR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot
UniProt A0A8V8TMV0_HUMAN UniProtKB/TrEMBL
  B3KPK7 ENTREZGENE, UniProtKB/TrEMBL
  G5E9G4 ENTREZGENE, UniProtKB/TrEMBL
  H0Y3V7_HUMAN UniProtKB/TrEMBL
  H7C055_HUMAN UniProtKB/TrEMBL
  H7C1P2_HUMAN UniProtKB/TrEMBL
  I6L9J2 ENTREZGENE, UniProtKB/TrEMBL
  Q2T9J9 ENTREZGENE
  Q6P0M3 ENTREZGENE, UniProtKB/TrEMBL
  Q6PIX4 ENTREZGENE
  Q8ND67 ENTREZGENE
1 to 40 of 46 rows