GWAS1617563_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1617563_H (body fat percentage QTL GWAS1617563 (human)) Homo sapiens

Symbol: GWAS1617563_H
Name: body fat percentage QTL GWAS1617563 (human)
RGD ID: 597521489
Trait: body fat mass   (VT:0010482)    
Measurement Type: body fat percentage   (CMO:0000302)    
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38247,056,363 - 47,056,364RGD_MAPPER_PIPELINEGRCh38
GRCh37247,283,502 - 47,283,503RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1617563_HHumanbody fat percentage  IAGPrs2949785405850206 GWAS_CATALOGPMID:37867527

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1617563_HHumanbody fat mass  IAGPrs2949785405850206 GWAS_CATALOGPMID:37867527

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1617563_HHumanbody fat percentage  IAGPrs2949785405850206 GWAS_CATALOGPMID:37867527

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1314700TTC7Atetratricopeptide repeat domain 7A24691586647076123Human
155640306LOC127273301H3K4me1 hESC enhancer GRCh37_chr2:47282739-4728368724705560047056548Human


Peak: (rs2949785)
Human AssemblyChrPosition (strand)Source
GRCh38247,056,363 - 47,056,364RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597521489GWAS1617563_Hbody fat percentage QTL GWAS1617563 (human)4e-09body fat mass (VT:0010482)body fat percentage (CMO:0000302)24705636347056364Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1617563_H GCST90432179 Body fat percentage (adjusted for testosterone and SHBG) 157,937 British ancestry males ? NR 4E-9 8.398 rs2949785 0.13 body fat percentage (EFO:0007800)
 PMID:37867527
GWAS1715274_H GCST008744 Predicted visceral adipose tissue 325,153 British ancestry individuals C 0.228 3E-9 8.523 rs2949785 0.017654141 visceral adipose tissue quantity (OBA:2045224)
 PMID:31501611
Database
Acc Id
Source(s)
GWAS Catalog GCST90432179 GWAS Catalog

Note Type Note Reference