GWAS1351184_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1351184_H (alkaline phosphatase measurement QTL GWAS1351184 (human)) Homo sapiens

Symbol: GWAS1351184_H
Name: alkaline phosphatase measurement QTL GWAS1351184 (human)
RGD ID: 597255110
Trait: alkaline phosphatase measurement
Measurement Type: blood alkaline phosphatase activity level   (CMO:0000576)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38246,998,752 - 46,998,753RGD_MAPPER_PIPELINEGRCh38
GRCh37247,225,891 - 47,225,892RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1351184_HHumanblood alkaline phosphatase activity level  IAGPrs736377405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1351184_HHumanalkaline phosphatase measurement  IAGPrs736377405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1314700TTC7Atetratricopeptide repeat domain 7A24691586647076123Human


Peak: (rs736377)
Human AssemblyChrPosition (strand)Source
GRCh38246,998,752 - 46,998,753RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597255110GWAS1351184_Halkaline phosphatase measurement QTL GWAS1351184 (human)2e-09alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)24699875246998753Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1351184_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals T NR 2E-9 8.699 rs736377 0.0157 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST90019494 GWAS Catalog

Note Type Note Reference