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Gene: Zbtb48 (zinc finger and BTB domain containing 48) Rattus norvegicus

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Symbol:

Zbtb48

Name:

zinc finger and BTB domain containing 48

RGD ID:

1311581

Description:

Predicted to enable DNA-binding transcription factor activity; identical protein binding activity; and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription; regulation of transcription by RNA polymerase II; and telomere maintenance via telomere lengthening. Predicted to be located in chromosome, telomeric region. Orthologous to human ZBTB48 (zinc finger and BTB domain containing 48); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GLI-Kruppel family member HKR3; Hkr3; LOC362668; MGC108933; zinc finger and BTB domain-containing protein 48

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	167,807,965 - 167,816,332 (-)	NCBI		GRCr8
mRatBN7.2	5	162,525,234 - 162,533,604 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,525,235 - 162,533,585 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	165,228,416 - 165,236,733 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	167,049,273 - 167,057,600 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	167,011,473 - 167,019,800 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	169,191,771 - 169,200,140 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,191,753 - 169,200,109 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	172,750,034 - 172,758,396 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	169,247,667 - 169,255,998 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	169,257,855 - 169,266,187 (-)	NCBI
Celera	5	160,758,007 - 160,766,255 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb48	Rat	chromosome 1p36 deletion syndrome		ISO	ZBTB48 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar
Zbtb48	Rat	Neurodevelopmental Disorders		ISO	ZBTB48 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb48	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Zbtb48 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ZBTB48 mRNA	CTD	PMID:36331819
Zbtb48	Rat	1,2-dimethylhydrazine	increases expression	ISO	Zbtb48 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of ZBTB48 mRNA	CTD	PMID:22206623
Zbtb48	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	Zbtb48 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ZBTB48 mRNA	CTD	PMID:17942748
Zbtb48	Rat	17beta-estradiol	decreases expression	EXP		6480464	Estradiol results in decreased expression of ZBTB48 mRNA	CTD	PMID:32145629
Zbtb48	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Zbtb48 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ZBTB48 mRNA	CTD	PMID:17942748
Zbtb48	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ZBTB48 mRNA	CTD	PMID:33387578
Zbtb48	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of ZBTB48 mRNA	CTD	PMID:21215274
Zbtb48	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of ZBTB48 mRNA	CTD	PMID:21346803
Zbtb48	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	bisphenol S results in decreased expression of ZBTB48 mRNA	CTD	PMID:39298647
Zbtb48	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	Zbtb48 (Mus musculus)	6480464	bisphenol S results in increased methylation of ZBTB48 promoter	CTD	PMID:33297965
Zbtb48	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ZBTB48 mRNA	CTD	PMID:30047161
Zbtb48	Rat	aflatoxin B1	increases expression	ISO	Zbtb48 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of ZBTB48 mRNA	CTD	PMID:19770486
Zbtb48	Rat	bisphenol A	affects methylation	ISO	Zbtb48 (Mus musculus)	6480464	bisphenol A affects the methylation of ZBTB48 promoter	CTD	PMID:27334623
Zbtb48	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ZBTB48 mRNA	CTD	PMID:34947998
Zbtb48	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ZBTB48 mRNA	CTD	PMID:32145629
Zbtb48	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of ZBTB48 gene	CTD	PMID:28505145
Zbtb48	Rat	bisphenol F	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	bisphenol F results in decreased expression of ZBTB48 mRNA	CTD	PMID:38685157
Zbtb48	Rat	cadmium dichloride	increases methylation	EXP		6480464	Cadmium Chloride results in increased methylation of ZBTB48 promoter	CTD	PMID:22457795
Zbtb48	Rat	caffeine	decreases phosphorylation	ISO	ZBTB48 (Homo sapiens)	6480464	Caffeine results in decreased phosphorylation of ZBTB48 protein	CTD	PMID:35688186
Zbtb48	Rat	carbon nanotube	increases expression	ISO	Zbtb48 (Mus musculus)	6480464	Nanotubes and Carbon analog results in increased expression of ZBTB48 mRNA	CTD	PMID:25554681
Zbtb48	Rat	clofibrate	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	Clofibrate results in decreased expression of ZBTB48 mRNA	CTD	PMID:23811191
Zbtb48	Rat	cyclosporin A	increases expression	ISO	Zbtb48 (Mus musculus)	6480464	Cyclosporine results in increased expression of ZBTB48 mRNA	CTD	PMID:19770486
Zbtb48	Rat	DDE	decreases expression	ISO	ZBTB48 (Homo sapiens)	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of ZBTB48 mRNA	CTD	PMID:38568856
Zbtb48	Rat	ethanol	multiple interactions	ISO	ZBTB48 (Homo sapiens)	6480464	[[Gasoline co-treated with Ethanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in increased expression of ZBTB48 mRNA	CTD	PMID:29432896
Zbtb48	Rat	folic acid	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	Folic Acid results in decreased expression of ZBTB48 mRNA	CTD	PMID:25629700
Zbtb48	Rat	FR900359	decreases phosphorylation	ISO	ZBTB48 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of ZBTB48 protein	CTD	PMID:37730182
Zbtb48	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of ZBTB48 mRNA	CTD	PMID:33387578
Zbtb48	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of ZBTB48 mRNA	CTD	PMID:30047161
Zbtb48	Rat	methyl methanesulfonate	increases expression	ISO	ZBTB48 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of ZBTB48 mRNA	CTD	PMID:23649840
Zbtb48	Rat	ozone	multiple interactions	ISO	ZBTB48 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of ZBTB48 mRNA	CTD	PMID:35430440
Zbtb48	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of ZBTB48 mRNA	CTD	PMID:33387578
Zbtb48	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Zbtb48 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ZBTB48 mRNA	CTD	PMID:36331819
Zbtb48	Rat	perfluorooctanoic acid	decreases expression	ISO	ZBTB48 (Homo sapiens)	6480464	perfluorooctanoic acid results in decreased expression of ZBTB48 mRNA	CTD	PMID:36326898
Zbtb48	Rat	pirinixic acid	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	pirinixic acid results in decreased expression of ZBTB48 mRNA	CTD	PMID:23811191
Zbtb48	Rat	propiconazole	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	propiconazole results in decreased expression of ZBTB48 mRNA	CTD	PMID:21278054
Zbtb48	Rat	propiconazole	decreases expression	EXP		6480464	propiconazole results in decreased expression of ZBTB48 mRNA	CTD	PMID:30047161
Zbtb48	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of ZBTB48 mRNA	CTD	PMID:30047161
Zbtb48	Rat	sunitinib	increases expression	ISO	ZBTB48 (Homo sapiens)	6480464	Sunitinib results in increased expression of ZBTB48 mRNA	CTD	PMID:31533062
Zbtb48	Rat	temozolomide	increases expression	ISO	ZBTB48 (Homo sapiens)	6480464	Temozolomide results in increased expression of ZBTB48 mRNA	CTD	PMID:31758290
Zbtb48	Rat	titanium dioxide	increases expression	EXP		6480464	titanium dioxide results in increased expression of ZBTB48 mRNA	CTD	PMID:30012374
Zbtb48	Rat	triphenyl phosphate	affects expression	ISO	ZBTB48 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ZBTB48 mRNA	CTD	PMID:37042841
Zbtb48	Rat	troglitazone	decreases expression	ISO	Zbtb48 (Mus musculus)	6480464	troglitazone results in decreased expression of ZBTB48 mRNA	CTD	PMID:28973697
Zbtb48	Rat	trovafloxacin	increases expression	ISO	Zbtb48 (Mus musculus)	6480464	trovafloxacin results in increased expression of ZBTB48 mRNA	CTD	PMID:35537566
Zbtb48	Rat	valproic acid	affects expression	ISO	Zbtb48 (Mus musculus)	6480464	Valproic Acid affects the expression of ZBTB48 mRNA	CTD	PMID:17963808

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb48	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:28500257	RGD	PMID:28500257
Zbtb48	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	regulation of RNA metabolic process	involved_in	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:39300486	RGD	PMID:39300486
Zbtb48	Rat	regulation of RNA metabolic process	involved_in	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	regulation of transcription by RNA polymerase II	involved_in	IBA	FB:FBgn0001325 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb48	Rat	telomere maintenance via telomere lengthening	involved_in	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:28082411 and PMID:28500257	RGD	PMID:28082411 and PMID:28500257
Zbtb48	Rat	telomere maintenance via telomere lengthening	involved_in	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb48	Rat	chromosome, telomeric region	located_in	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:28082411 and PMID:28500257	RGD	PMID:28082411 and PMID:28500257
Zbtb48	Rat	chromosome, telomeric region	located_in	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Zbtb48	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb48	Rat	DNA-binding transcription factor activity	enables	IBA	CGD:CAL0000176618 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb48	Rat	double-stranded telomeric DNA binding	enables	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:28082411	RGD	PMID:28082411
Zbtb48	Rat	double-stranded telomeric DNA binding	enables	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	identical protein binding	enables	ISO	ZBTB48 (Homo sapiens)	1624291	UniProtKB:P10074 more ...	RGD	PMID:25416956 and PMID:32296183
Zbtb48	Rat	identical protein binding	enables	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zbtb48	Rat	protein binding	enables	ISO	ZBTB48 (Homo sapiens)	1624291	UniProtKB:P02545 more ...	RGD	PMID:16189514 more ...
Zbtb48	Rat	RNA binding	enables	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	RNA binding	enables	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:39300486	RGD	PMID:39300486
Zbtb48	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:1920441 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb48	Rat	transcription cis-regulatory region binding	enables	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:28500257	RGD	PMID:28500257
Zbtb48	Rat	transcription cis-regulatory region binding	enables	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zbtb48	Rat	zinc ion binding	enables	IEA	UniProtKB:P10074 and ensembl:ENSP00000366902	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb48	Rat	zinc ion binding	enables	ISO	ZBTB48 (Homo sapiens)	1624291	PMID:39562739	RGD	PMID:39562739

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:8889548	PMID:25416956	PMID:28082411	PMID:28500257

Zbtb48
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	167,807,965 - 167,816,332 (-)	NCBI		GRCr8
mRatBN7.2	5	162,525,234 - 162,533,604 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,525,235 - 162,533,585 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	165,228,416 - 165,236,733 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	167,049,273 - 167,057,600 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	167,011,473 - 167,019,800 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	169,191,771 - 169,200,140 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,191,753 - 169,200,109 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	172,750,034 - 172,758,396 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	169,247,667 - 169,255,998 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	169,257,855 - 169,266,187 (-)	NCBI
Celera	5	160,758,007 - 160,766,255 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ZBTB48
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	6,579,994 - 6,589,280 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	6,579,994 - 6,589,280 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	6,640,054 - 6,649,340 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	6,562,698 - 6,571,926 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	6,574,376 - 6,583,605	NCBI
Celera	1	5,753,931 - 5,763,198 (+)	NCBI		Celera
Cytogenetic Map	1	p36.31	NCBI
HuRef	1	5,787,988 - 5,797,267 (+)	NCBI		HuRef
CHM1_1	1	6,628,790 - 6,638,066 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	6,105,658 - 6,114,944 (+)	NCBI		T2T-CHM13v2.0

Zbtb48
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	152,104,230 - 152,112,132 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	152,104,231 - 152,112,128 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	152,019,773 - 152,027,675 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	152,019,774 - 152,027,671 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	151,393,885 - 151,401,780 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	150,863,574 - 150,871,458 (-)	NCBI		MGSCv36	mm8
Celera	4	154,305,920 - 154,314,047 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	82.83	NCBI

Zbtb48
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	6,048,234 - 6,055,690 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	6,049,242 - 6,056,253 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB48
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	221,638,846 - 221,648,166 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	220,280,945 - 220,290,260 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	5,341,282 - 5,350,590 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	6,594,372 - 6,603,367 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	6,594,372 - 6,603,367 (+)	Ensembl	panpan1.1		panPan2

ZBTB48
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	60,406,145 - 60,413,532 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	60,406,700 - 60,413,492 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	60,415,683 - 60,423,077 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	60,621,820 - 60,629,216 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	60,621,839 - 60,629,210 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	60,620,895 - 60,628,287 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	60,487,572 - 60,494,968 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	60,889,690 - 60,897,084 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	30,848,826 - 30,857,102 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	1,334,046 - 1,344,153 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936623	1,334,084 - 1,342,341 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB48
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	67,410,574 - 67,418,293 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	67,410,558 - 67,418,295 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	62,363,772 - 62,425,369 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB48
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	125,157,938 - 125,167,037 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	125,157,860 - 125,167,014 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	29,202,992 - 29,212,114 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb48
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	4,942,849 - 4,951,024 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	4,943,468 - 4,951,223 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Zbtb48
24 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	85
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000012745
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	154828214	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	151113452	164465185	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat

RH134774

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	162,525,342 - 162,525,537 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,191,880 - 169,192,074	NCBI	Rnor6.0
Rnor_5.0	5	172,750,143 - 172,750,337	UniSTS	Rnor5.0
RGSC_v3.4	5	169,247,776 - 169,247,970	UniSTS	RGSC3.4
Celera	5	160,758,116 - 160,758,310	UniSTS
RH 3.4 Map	5	1138.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH101847

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	162,525,234 - 162,525,451 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,191,772 - 169,191,988	NCBI	Rnor6.0
Rnor_5.0	5	172,750,035 - 172,750,251	UniSTS	Rnor5.0
RGSC_v3.4	5	169,247,668 - 169,247,884	UniSTS	RGSC3.4
Celera	5	160,758,008 - 160,758,224	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001013216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ200912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO567542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012745 ⟹ ENSRNOP00000012745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	162,525,235 - 162,533,558 (-)	Ensembl
Rnor_6.0 Ensembl	5	169,191,753 - 169,200,109 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105422 ⟹ ENSRNOP00000076898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	162,525,235 - 162,533,585 (-)	Ensembl

RefSeq Acc Id:

NM_001013216 ⟹ NP_001013234

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,816,286 (-)	NCBI
mRatBN7.2	5	162,525,234 - 162,533,558 (-)	NCBI
Rnor_6.0	5	169,191,771 - 169,200,109 (-)	NCBI
Rnor_5.0	5	172,750,034 - 172,758,396 (-)	NCBI
RGSC_v3.4	5	169,247,667 - 169,255,998 (-)	RGD
Celera	5	160,758,007 - 160,766,255 (-)	RGD

Sequence:

show sequence

GGCGTCTCCGCGCTGTGGGCCGGGCAGTAGTTAGTCTTGTGGGCGGTGGAAGTGGTCTAGCCCGGAGCAGTGAGGCCGGTGCGAGCCGGGAGGACCGGCAGGATTATGGATGGTTCCTTCGTACAGCA
CAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGTGAGAAGGGCCAGTATTGCGACGCCACGCTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCGTTTCT
TCCAGAGAATCTACGGGGATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCAGGTTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGAT
CAGGTGCTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGCGGGACAGGCACAGAGTGGACCGGGCCAAGTTTCCTCCCAGGATGTGAA
AAGCCACCTCAAGGAGCCAACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCTGTGGATCAGGAGCCCAGAGACGGTGAGCAGCCCCAGCTCAGCACACCTGCCCAGAGCAGCC
CGGCCTTCCTCTGTGGGAAACTCAAGCAGGTGTTGAAGCCTTCTCCCCCAGCGGACAAAGAGTCTGAGGACAGCAAAGAGCCCCCAAGGCCTTTTGAAGCTGAAGGTGCCCCACTGCAGGGCGAGAGC
AATGAGTGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTATGCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCC
AGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGCAGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAGGA
AACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAGGTCTTCACATGCTCCGTA
TGCCAGGAGACCTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAGTGCTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACAT
GATCAAGCTGCATGGAGCCCCTAAACCCCACGCATGCCCCACTTGTGCCAAGTGCTTCCTGTCTAGGACGGAGCTACAGCTGCACGAGGCTTTTAAGCATCGTGGAGAAAAGCTCTTTGTGTGTGAAG
AATGTGGGCACCGGGCCTCAAGCCGCAATGGGCTGCAGATGCACATCAAGGCCAAGCACAGGAATGAAAGGCCGTATGTCTGTGAGTTCTGCAGCCATGCATTCACCCAGAAGGCCAACCTCAACATG
CACCTGCGCACACACACAGGAGAGAAGCCCTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAGCCAGTCTGGACAAGCACAACCGCACCCACACGGGTGAGAGGCCTTTTAGCTGTGAATT
CTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGCCGTCATCAGGAGGGCAGACCTCATTTCTGCCAGATCTGTGGCAAGACCTTCAAAGCAGTGGAACAGTTACGGGTGC
ACGTCAGACGACACAAAGGCGTGAGAAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTCACTCGGCAGGCTCACCTGCGGAGGCACATGGAGATCCACGATAGAGTGGAGAACTACAACCCTCGGCAG
CGCAAGCTCCGGAACCTCATCATCGACGATGAGAAGATGGTGGTGGTGGCTCTCCAGCCACCTGCAGACCTGGAGGTGGGCTCCGCAGAGGTCATTGTGGAGTCCCTGACCCAGGGTGGCCTTGCCTC
CCAACTCCCTAGCCAGAGACTGTGTTCAGAGGAGAGCTTTGCTAGCTCCGGGGTCCTGGAGCCGTCTCTCATCATCACGGCTGCTGTCCCTGAGGACTGTGACACGTAGCCTGTCCAGTGTCCCCTTG
ACCAATAAACATGTGACTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239469 ⟹ XP_006239531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,816,309 (-)	NCBI
mRatBN7.2	5	162,525,276 - 162,533,512 (-)	NCBI
Rnor_6.0	5	169,191,771 - 169,200,140 (-)	NCBI
Rnor_5.0	5	172,750,034 - 172,758,396 (-)	NCBI

Sequence:

show sequence

GCCTATACGTCACATCCGGCGCGGCGACGGCGGCGTCTCCGCGCTGTGGGCCGGGCAGTAGTTA
GTCTTGTGGGCGGTGGAAGTGGTCTAGCCCGGAGCAGTGAGGCCGATTATGGATGGTTCCTTCGTACAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGTGAGAAGGGCCAGTATTGCGA
CGCCACGCTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCGTTTCTTCCAGAGAATCTACGGGGATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCAGGTTTTG
CTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTGCTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAG
AGCTTCCAGCCCCAAACCTCAGCGGGACAGGCACAGAGTGGACCGGGCCAAGTTTCCTCCCAGGATGTGAAAAGCCACCTCAAGGAGCCAACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAG
CCTGGCCTCTGTGGATCAGGAGCCCAGAGACGGTGAGCAGCCCCAGCTCAGCACACCTGCCCAGAGCAGCCCGGCCTTCCTCTGTGGGAAACTCAAGCAGGTGTTGAAGCCTTCTCCCCCAGCGGACA
AAGAGTCTGAGGACAGCAAAGAGCCCCCAAGGCCTTTTGAAGCTGAAGGTGCCCCACTGCAGGGCGAGAGCAATGAGTGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTAT
GCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCCAGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGC
AGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAGGAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCA
AGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAGGTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACA
GGGGAGATGCCCTACAAGTGCTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAGCTGCATGGAGCCCCTAAACCCCACGCATGCCCCACTTGTGCCAAGTGCTT
CCTGTCTAGGACGGAGCTACAGCTGCACGAGGCTTTTAAGCATCGTGGAGAAAAGCTCTTTGTGTGTGAAGAATGTGGGCACCGGGCCTCAAGCCGCAATGGGCTGCAGATGCACATCAAGGCCAAGC
ACAGGAATGAAAGGCCGTATGTCTGTGAGTTCTGCAGCCATGCATTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACAGGAGAGAAGCCCTTCCAGTGCCACCTCTGTGGGAAGACC
TTCCGCACCCAAGCCAGTCTGGACAAGCACAACCGCACCCACACGGGTGAGAGGCCTTTTAGCTGTGAATTCTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGCCGTCA
TCAGGAGGGCAGACCTCATTTCTGCCAGATCTGTGGCAAGACCTTCAAAGCAGTGGAACAGTTACGGGTGCACGTCAGACGACACAAAGGCGTGAGAAAGTTCGAGTGCACCGAGTGTGGCTACAAGT
TCACTCGGCAGGCTCACCTGCGGAGGCACATGGAGATCCACGATAGAGTGGAGAACTACAACCCTCGGCAGCGCAAGCTCCGGAACCTCATCATCGACGATGAGAAGATGGTGGTGGTGGCTCTCCAG
CCACCTGCAGACCTGGAGGTGGGCTCCGCAGAGGTCATTGTGGAGTCCCTGACCCAGGGTGGCCTTGCCTCCCAACTCCCTAGCCAGAGACTGTGTTCAGAGGAGAGCTTTGCTAGCTCCGGGGTCCT
GGAGCCGTCTCTCATCATCACGGCTGCTGTCCCTGAGGACTGTGACACGTAGCCTGTCCAGTGTCCCCTTGACCAATAAACATGTGACTTAGGA

hide sequence

RefSeq Acc Id:

XM_039110449 ⟹ XP_038966377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,816,332 (-)	NCBI
mRatBN7.2	5	162,525,234 - 162,533,604 (-)	NCBI

RefSeq Acc Id:

XM_039110450 ⟹ XP_038966378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,816,312 (-)	NCBI
mRatBN7.2	5	162,525,234 - 162,533,585 (-)	NCBI

RefSeq Acc Id:

XM_039110451 ⟹ XP_038966379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,816,305 (-)	NCBI
mRatBN7.2	5	162,525,234 - 162,533,436 (-)	NCBI

RefSeq Acc Id:

XM_039110452 ⟹ XP_038966380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,811,065 (-)	NCBI
mRatBN7.2	5	162,525,234 - 162,528,337 (-)	NCBI

RefSeq Acc Id:

XM_039110453 ⟹ XP_038966381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,810,429 - 167,816,332 (-)	NCBI
mRatBN7.2	5	162,527,701 - 162,533,604 (-)	NCBI

RefSeq Acc Id:

XM_063288093 ⟹ XP_063144163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,807,965 - 167,816,299 (-)	NCBI

RefSeq Acc Id:

XR_005504504

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	167,809,875 - 167,816,332 (-)	NCBI
mRatBN7.2	5	162,526,069 - 162,533,604 (-)	NCBI


Protein RefSeqs	NP_001013234	(Get FASTA)	NCBI Sequence Viewer
	XP_006239531	(Get FASTA)	NCBI Sequence Viewer
	XP_038966377	(Get FASTA)	NCBI Sequence Viewer
	XP_038966378	(Get FASTA)	NCBI Sequence Viewer
	XP_038966379	(Get FASTA)	NCBI Sequence Viewer
	XP_038966380	(Get FASTA)	NCBI Sequence Viewer
	XP_038966381	(Get FASTA)	NCBI Sequence Viewer
	XP_063144163	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91214	(Get FASTA)	NCBI Sequence Viewer
	EDL81212	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012745
	ENSRNOP00000012745.3
	ENSRNOP00000076898.1

RefSeq Acc Id:

NP_001013234 ⟸ NM_001013216

- UniProtKB:

G3V777 (UniProtKB/TrEMBL), A6IUG1 (UniProtKB/TrEMBL), A0A8I5YBZ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDGSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSRFFQRIYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSAGQAQSGPG
QVSSQDVKSHLKEPTDLDEEEVFRTLSLASVDQEPRDGEQPQLSTPAQSSPAFLCGKLKQVLKPSPPADKESEDSKEPPRPFEAEGAPLQGESNEWEVVVQVEDDRDGDGDYASEPETVLTRRKSKVI
RKPCAAEPALGAGSLTAEPTEGRKGAAVPVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRVHMVSHTGEMPYKCSSCSQQFMQ
KKDLQSHMIKLHGAPKPHACPTCAKCFLSRTELQLHEAFKHRGEKLFVCEECGHRASSRNGLQMHIKAKHRNERPYVCEFCSHAFTQKANLNMHLRTHTGEKPFQCHLCGKTFRTQASLDKHNRTHTG
ERPFSCEFCEQRFTEKGPLLRHVASRHQEGRPHFCQICGKTFKAVEQLRVHVRRHKGVRKFECTECGYKFTRQAHLRRHMEIHDRVENYNPRQRKLRNLIIDDEKMVVVALQPPADLEVGSAEVIVES
LTQGGLASQLPSQRLCSEESFASSGVLEPSLIITAAVPEDCDT

hide sequence

RefSeq Acc Id:	XP_006239531 ⟸ XM_006239469
- Peptide Label:	isoform X2
- UniProtKB:	G3V777 (UniProtKB/TrEMBL), A6IUG1 (UniProtKB/TrEMBL), A0A8I5YBZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSRFFQRIYGDGSGGSVV LPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSAGQAQSGPGQVSSQDVKSHLKEPTDLDEEEVFRTLSLASVDQEPRDGEQPQLSTPAQSSPAFLCGKLKQVLKP SPPADKESEDSKEPPRPFEAEGAPLQGESNEWEVVVQVEDDRDGDGDYASEPETVLTRRKSKVIRKPCAAEPALGAGSLTAEPTEGRKGAAVPVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRVHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHGAPKPHACPTCAKCFLSRTELQLHEAFKHRGEKLFVCEECGHRASSRNGLQM HIKAKHRNERPYVCEFCSHAFTQKANLNMHLRTHTGEKPFQCHLCGKTFRTQASLDKHNRTHTGERPFSCEFCEQRFTEKGPLLRHVASRHQEGRPHFCQICGKTFKAVEQLRVHVRRHKGVRKFECT ECGYKFTRQAHLRRHMEIHDRVENYNPRQRKLRNLIIDDEKMVVVALQPPADLEVGSAEVIVESLTQGGLASQLPSQRLCSEESFASSGVLEPSLIITAAVPEDCDT hide sequence

Ensembl Acc Id:

ENSRNOP00000012745 ⟸ ENSRNOT00000012745

RefSeq Acc Id:	XP_038966377 ⟸ XM_039110449
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038966378 ⟸ XM_039110450
- Peptide Label:	isoform X1

Protein Domains

BTB C2H2-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V777-F1-model_v2	AlphaFold	G3V777	1-683	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13694296

Promoter ID:

EPDNEW_R4819

Type:

initiation region

Name:

Zbtb48_1

Description:

zinc finger and BTB domain containing 48

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	169,200,077 - 169,200,137	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-39027	BioCyc
Ensembl Genes	ENSRNOG00000009595	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012745	ENTREZGENE
	ENSRNOT00000012745.6	UniProtKB/TrEMBL
	ENSRNOT00000105422.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7383542	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	C2H2-ZF_domain-containing	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	ZnFinger_BTB_dom_contain	UniProtKB/TrEMBL
KEGG Report	rno:362668	UniProtKB/TrEMBL
MGC_CLONE	MGC:108933	IMAGE-MGC_LOAD
NCBI Gene	362668	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/TrEMBL
	AGAP004733-PA	UniProtKB/TrEMBL
	C2H2-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 200	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb48	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009595	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I5YBZ1	ENTREZGENE, UniProtKB/TrEMBL
	A6IUG1	ENTREZGENE, UniProtKB/TrEMBL
	G3V777	ENTREZGENE, UniProtKB/TrEMBL
	Q5BK41	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-20	Zbtb48	zinc finger and BTB domain containing 48	Hkr3	GLI-Kruppel family member HKR3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Hkr3	GLI-Kruppel family member HKR3	Hkr3_predicted	GLI-Kruppel family member HKR3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Hkr3_predicted	GLI-Kruppel family member HKR3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar