ZBTB48 (zinc finger and BTB domain containing 48)

Gene: ZBTB48 (zinc finger and BTB domain containing 48) Chlorocebus sabaeus

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Symbol:

ZBTB48

Name:

zinc finger and BTB domain containing 48

RGD ID:

18395120

Description:

ENCODES a protein that exhibits double-stranded telomeric DNA binding (ortholog); identical protein binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); telomere maintenance via telomere lengthening (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromosome, telomeric region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger and BTB domain-containing protein 48

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	125,157,938 - 125,167,037 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	125,157,860 - 125,167,014 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	29,202,992 - 29,212,114 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

telomere maintenance via telomere lengthening (ISO)

Cellular Component

chromosome, telomeric region (ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

double-stranded telomeric DNA binding (ISO)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

transcription cis-regulatory region binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ZBTB48
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	125,157,938 - 125,167,037 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	125,157,860 - 125,167,014 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	29,202,992 - 29,212,114 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ZBTB48
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	6,579,994 - 6,589,280 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	6,579,994 - 6,589,280 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	6,640,054 - 6,649,340 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	6,562,698 - 6,571,926 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	6,574,376 - 6,583,605	NCBI
Celera	1	5,753,931 - 5,763,198 (+)	NCBI		Celera
Cytogenetic Map	1	p36.31	NCBI
HuRef	1	5,787,988 - 5,797,267 (+)	NCBI		HuRef
CHM1_1	1	6,628,790 - 6,638,066 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	6,105,658 - 6,114,944 (+)	NCBI		T2T-CHM13v2.0

Zbtb48
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	152,104,230 - 152,112,132 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	152,104,231 - 152,112,128 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	152,019,773 - 152,027,675 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	152,019,774 - 152,027,671 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	151,393,885 - 151,401,780 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	150,863,574 - 150,871,458 (-)	NCBI		MGSCv36	mm8
Celera	4	154,305,920 - 154,314,047 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	82.83	NCBI

Zbtb48
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	167,807,965 - 167,816,332 (-)	NCBI		GRCr8
mRatBN7.2	5	162,525,234 - 162,533,604 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,525,235 - 162,533,585 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	165,228,416 - 165,236,733 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	167,049,273 - 167,057,600 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	167,011,473 - 167,019,800 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	169,191,771 - 169,200,140 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,191,753 - 169,200,109 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	172,750,034 - 172,758,396 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	169,247,667 - 169,255,998 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	169,257,855 - 169,266,187 (-)	NCBI
Celera	5	160,758,007 - 160,766,255 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Zbtb48
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	6,048,234 - 6,055,690 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	6,049,242 - 6,056,253 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB48
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	221,638,846 - 221,648,166 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	220,280,945 - 220,290,260 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	5,341,282 - 5,350,590 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	6,594,372 - 6,603,367 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	6,594,372 - 6,603,367 (+)	Ensembl	panpan1.1		panPan2

ZBTB48
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	60,406,145 - 60,413,532 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	60,406,700 - 60,413,492 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	60,415,683 - 60,423,077 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	60,621,820 - 60,629,216 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	60,621,839 - 60,629,210 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	60,620,895 - 60,628,287 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	60,487,572 - 60,494,968 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	60,889,690 - 60,897,084 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	30,848,826 - 30,857,102 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	1,334,046 - 1,344,153 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936623	1,334,084 - 1,342,341 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB48
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	67,410,574 - 67,418,293 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	67,410,558 - 67,418,295 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	62,363,772 - 62,425,369 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Zbtb48
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	4,942,849 - 4,951,024 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	4,943,468 - 4,951,223 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	28		32
Low	8	20	28
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007980741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_494529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000017788 ⟹ ENSCSAP00000017260

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	125,157,860 - 125,167,014 (-)	Ensembl

RefSeq Acc Id:

XM_007980741 ⟹ XP_007978932

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	125,157,938 - 125,166,981 (-)	NCBI
Vero_WHO_p1.0	NW_023666054	29,203,000 - 29,212,101 (-)	NCBI

Sequence:

show sequence

GCATAGCCGGGCAGTTGGTTCGTGGGCTGTGGAGGCGACGGAGCCGGGGGCTGGTGGGGCCGGC
TCAGGGAGGACCTGCCTGGACCATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCTGCAG
GAGCTCAACAAGCAGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTTGGGGGCCTGG
TGTTTAAGGCGCACTGGAGTGTCCTTGCCTGCTGCAGCCACTTCTTCCAGAGCCTCTACGGGGA
TGGCTCAGGAGGTAGTGTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGAC
TTTTTCTACACTGGTCACCTCGCTCTCACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCA
GGGAGTTGCGAGTGCCAGAGGCCGTAGAGCTGTGCCAGAGCTTCAAGCCCAAAACTTCAGTGGG
ACAGGCAGCAGGTGGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAGAATGTGAACAGCCTCCTC
AAGGAGCCGGCAGGCTTGCAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCCCAGAGATC
AGGAGCCCAGAGGCAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGAGAGAG
CCCCTCCTCTCTCTGTGGGAAACTCAAGCAGGCCTTGAAGCCTTGTTCCCCCGAGGACAAGGAA
CCTGAGGACTGCAAAGTGCCTCCAAGGCCCTTCGAGGCTGAAAGTGACCAGCTGCAGGGCGGGA
GTAATGAGTGGGAAGTGGTGGTTCAAGTGGAGGACGACGGGGATGGTGATTACATGTCTGAGCC
TGAGGCTGTGCTGACCAGGAGGAAGTCAAATGTAATCCGAAAGGCCTGTGCAGCTGAGCCAGCC
CTGAGCGCGGGCTCCCTAGCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCGGTCG
AATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTATCTAAAAGTCCACAACAGGAAACA
TACTGGGGAGAAACCCTTTGAGTGTCCCAAGTGTGGGAAGTGTTACTTTCGGAAGGAGAACCTC
CTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCGGAACAGCATCCCCCCCTGCCCAGGCAGA
CTCTTCCCAGCAGCAAGCGGAAGCCCGGGCAGAGGCTGCTGTCACAGGCAGAGGCCCCCGCTGA
TGCCGGCCCTGCTTGCCCCTCACACTGCCAGGTCTTCACGTGCTCCGTGTGCCAGGAGACATTC
CGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAGTGTT
CCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAGCTGCATGG
AGCCCCAAAGCCCCATGCATGCCCCACCTGTGCCAAGTGCTTCCTGTCTCGGACAGAGCTGCAG
CTGCATGAAGCTTTCAAGCACCGTGGTGAGAAGCTGTTTGTGTGTGAGGAGTGTGGGCACCGGG
CCTCGAGCCGGAATGGCCTGCAGATGCACATCAAGGCCAAGCACAGGAATGAGAGGCCACACGT
GTGTGAGTTCTGCAGCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTGCGCACACAC
ACGGGGGAGAAGCCCTTCCAGTGCCACCTCTGTGGCAAGACCTTCCGAACCCAAGCCAGCCTGG
ACAAGCACAACCGCACTCACACTGGGGAAAGGCCCTTCAGTTGCGAGTTCTGTGAACAGCGCTT
CACTGAGAAGGGGCCCCTCCTGAGGCACGTGGCCAGCCGCCATCAGGAGGGCCGGCCCCACTTC
TGCCAGATCTGCGGCAAGACCTTCAAAGCCGTGGAACAACTGCGTGTGCATGTCAGACGACATA
AGGGGGTGAGGAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTTACCCGGCAGGCCCACCTGCG
GAGGCACATGGAAATCCACGACCGGGTGGAGAACTACAACCCGCGGCAGCGCAAGCTCCGCAAC
CTGATCATCGAGGACGAGAAGATGGTGGTGGTGGCGCTGCAGCCGCCTGCGGAGCTGGAGGTGG
GCTCGGCGGAGGTCATTGTGGAATCCCTGGCCCAGGGTGGCCTGGCCTCCCAGCTCCCAGGCCA
GAGACTGTGTGCAGAGGAGAGCTTCACCAGCCCAGGTGTCCTGGAGCCCTCCCTCATCATCACA
GCTGCTGTCCCTGAGGACTGTGACACATAGCCCACTTTGGCCACCAGAGCCCACTTGGCCCCAC
CCAATAAACCGTGTGGTGTTGGACTTGCGTA

hide sequence

RefSeq Acc Id:

XM_007980742 ⟹ XP_007978933

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	125,157,938 - 125,166,881 (-)	NCBI
Vero_WHO_p1.0	NW_023666054	29,203,000 - 29,212,114 (-)	NCBI

Sequence:

show sequence

TGAGGGAGGGAGGGGCTGCGGGCCGCCGTGGCTGCCTTCCGCTCGGCCGCTCGGGACCTGTAGG
CGCGGCGTGGGCTCCGCTCACCTGTCCGCGGCCGCCGTCCTCCCCAGTCCAGGATCCTCTCACT
GTGCCAGGCCAGTCAGTTCGCGCTCATCCCGTGCCTTCTTTCCCCAAACTTGGATTTTTCCCAC
CAGGCCCTTCTTCATGACCCTGACCCCCCATCAGCATCCCCCCTGGCCAATCCAATATGGCCCC
CGGTCCTCGGGGGGCTGTCAAGTGTGTTCCTGCCCTCCGCGTGCACCCCTCACCTTGATCCAAG
CCCTCGTGCTGATAAATGTGATTATTTGAGTGGAGGCCAACTTCCCCTTTCTCTCTCTTCGACT
CCAGGGGCTTTCTCTTGCATACGCTCGCTTGGGCTGGCCAGGGTGTCACTTCTGCTTCCTTGCC
CTCCAGACCATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCTGCAGGAGCTCAACAAGC
AGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTTGGGGGCCTGGTGTTTAAGGCGCA
CTGGAGTGTCCTTGCCTGCTGCAGCCACTTCTTCCAGAGCCTCTACGGGGATGGCTCAGGAGGT
AGTGTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGACTTTTTCTACACTG
GTCACCTCGCTCTCACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGTTGCGAGT
GCCAGAGGCCGTAGAGCTGTGCCAGAGCTTCAAGCCCAAAACTTCAGTGGGACAGGCAGCAGGT
GGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAGAATGTGAACAGCCTCCTCAAGGAGCCGGCAG
GCTTGCAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCCCAGAGATCAGGAGCCCAGAGG
CAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGAGAGAGCCCCTCCTCTCTC
TGTGGGAAACTCAAGCAGGCCTTGAAGCCTTGTTCCCCCGAGGACAAGGAACCTGAGGACTGCA
AAGTGCCTCCAAGGCCCTTCGAGGCTGAAAGTGACCAGCTGCAGGGCGGGAGTAATGAGTGGGA
AGTGGTGGTTCAAGTGGAGGACGACGGGGATGGTGATTACATGTCTGAGCCTGAGGCTGTGCTG
ACCAGGAGGAAGTCAAATGTAATCCGAAAGGCCTGTGCAGCTGAGCCAGCCCTGAGCGCGGGCT
CCCTAGCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCGGTCGAATGCCCCACATG
TCATAAAAAGTTCCTCAGCAAATATTATCTAAAAGTCCACAACAGGAAACATACTGGGGAGAAA
CCCTTTGAGTGTCCCAAGTGTGGGAAGTGTTACTTTCGGAAGGAGAACCTCCTGGAGCATGAAG
CCCGGAATTGCATGAACCGCTCGGAACAGACTCTTCCCAGCAGCAAGCGGAAGCCCGGGCAGAG
GCTGCTGTCACAGGCAGAGGCCCCCGCTGATGCCGGCCCTGCTTGCCCCTCACACTGCCAGGTC
TTCACGTGCTCCGTGTGCCAGGAGACATTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGT
CTCACACAGGGGAGATGCCCTACAAGTGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGA
CTTGCAGAGCCACATGATCAAGCTGCATGGAGCCCCAAAGCCCCATGCATGCCCCACCTGTGCC
AAGTGCTTCCTGTCTCGGACAGAGCTGCAGCTGCATGAAGCTTTCAAGCACCGTGGTGAGAAGC
TGTTTGTGTGTGAGGAGTGTGGGCACCGGGCCTCGAGCCGGAATGGCCTGCAGATGCACATCAA
GGCCAAGCACAGGAATGAGAGGCCACACGTGTGTGAGTTCTGCAGCCACGCCTTCACCCAAAAG
GCCAATCTCAACATGCACCTGCGCACACACACGGGGGAGAAGCCCTTCCAGTGCCACCTCTGTG
GCAAGACCTTCCGAACCCAAGCCAGCCTGGACAAGCACAACCGCACTCACACTGGGGAAAGGCC
CTTCAGTTGCGAGTTCTGTGAACAGCGCTTCACTGAGAAGGGGCCCCTCCTGAGGCACGTGGCC
AGCCGCCATCAGGAGGGCCGGCCCCACTTCTGCCAGATCTGCGGCAAGACCTTCAAAGCCGTGG
AACAACTGCGTGTGCATGTCAGACGACATAAGGGGGTGAGGAAGTTCGAGTGCACCGAGTGTGG
CTACAAGTTTACCCGGCAGGCCCACCTGCGGAGGCACATGGAAATCCACGACCGGGTGGAGAAC
TACAACCCGCGGCAGCGCAAGCTCCGCAACCTGATCATCGAGGACGAGAAGATGGTGGTGGTGG
CGCTGCAGCCGCCTGCGGAGCTGGAGGTGGGCTCGGCGGAGGTCATTGTGGAATCCCTGGCCCA
GGGTGGCCTGGCCTCCCAGCTCCCAGGCCAGAGACTGTGTGCAGAGGAGAGCTTCACCAGCCCA
GGTGTCCTGGAGCCCTCCCTCATCATCACAGCTGCTGTCCCTGAGGACTGTGACACATAGCCCA
CTTTGGCCACCAGAGCCCACTTGGCCCCACCCAATAAACCGTGTGGTGTTGGACTTGCGTA

hide sequence

RefSeq Acc Id:

XM_007980743 ⟹ XP_007978934

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	125,157,938 - 125,167,037 (-)	NCBI
Vero_WHO_p1.0	NW_023666054	29,202,992 - 29,212,097 (-)	NCBI

Sequence:

show sequence

TCTGACGTCACGTCCGGCGCGGAGACGGCTGCGTCTCCGCACGGCCGGCGGGGCACGCATAGCC
GGGCAGTTGGTTCGTGGGCTGTGGAGGCGACGGAGCCGGGGGCTGGTGGGGCCGGCTCAGGGAG
GACCTGCCTGGGGGCTTTCTCTTGCATACGCTCGCTTGGGCTGGCCAGGGTGTCACTTCTGCTT
CCTTGCCCTCCAGACCATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCTGCAGGAGCTC
AACAAGCAGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTTGGGGGCCTGGTGTTTA
AGGCGCACTGGAGTGTCCTTGCCTGCTGCAGCCACTTCTTCCAGAGCCTCTACGGGGATGGCTC
AGGAGGTAGTGTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGACTTTTTC
TACACTGGTCACCTCGCTCTCACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGT
TGCGAGTGCCAGAGGCCGTAGAGCTGTGCCAGAGCTTCAAGCCCAAAACTTCAGTGGGACAGGC
AGCAGGTGGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAGAATGTGAACAGCCTCCTCAAGGAG
CCGGCAGGCTTGCAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCCCAGAGATCAGGAGC
CCAGAGGCAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGAGAGAGCCCCTC
CTCTCTCTGTGGGAAACTCAAGCAGGCCTTGAAGCCTTGTTCCCCCGAGGACAAGGAACCTGAG
GACTGCAAAGTGCCTCCAAGGCCCTTCGAGGCTGAAAGTGACCAGCTGCAGGGCGGGAGTAATG
AGTGGGAAGTGGTGGTTCAAGTGGAGGACGACGGGGATGGTGATTACATGTCTGAGCCTGAGGC
TGTGCTGACCAGGAGGAAGTCAAATGTAATCCGAAAGGCCTGTGCAGCTGAGCCAGCCCTGAGC
GCGGGCTCCCTAGCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCGGTCGAATGCC
CCACATGTCATAAAAAGTTCCTCAGCAAATATTATCTAAAAGTCCACAACAGGAAACATACTGG
GGAGAAACCCTTTGAGTGTCCCAAGTGTGGGAAGTGTTACTTTCGGAAGGAGAACCTCCTGGAG
CATGAAGCCCGGAATTGCATGAACCGCTCGGAACAGGTCTTCACGTGCTCCGTGTGCCAGGAGA
CATTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAA
GTGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAGCTG
CATGGAGCCCCAAAGCCCCATGCATGCCCCACCTGTGCCAAGTGCTTCCTGTCTCGGACAGAGC
TGCAGCTGCATGAAGCTTTCAAGCACCGTGGTGAGAAGCTGTTTGTGTGTGAGGAGTGTGGGCA
CCGGGCCTCGAGCCGGAATGGCCTGCAGATGCACATCAAGGCCAAGCACAGGAATGAGAGGCCA
CACGTGTGTGAGTTCTGCAGCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTGCGCA
CACACACGGGGGAGAAGCCCTTCCAGTGCCACCTCTGTGGCAAGACCTTCCGAACCCAAGCCAG
CCTGGACAAGCACAACCGCACTCACACTGGGGAAAGGCCCTTCAGTTGCGAGTTCTGTGAACAG
CGCTTCACTGAGAAGGGGCCCCTCCTGAGGCACGTGGCCAGCCGCCATCAGGAGGGCCGGCCCC
ACTTCTGCCAGATCTGCGGCAAGACCTTCAAAGCCGTGGAACAACTGCGTGTGCATGTCAGACG
ACATAAGGGGGTGAGGAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTTACCCGGCAGGCCCAC
CTGCGGAGGCACATGGAAATCCACGACCGGGTGGAGAACTACAACCCGCGGCAGCGCAAGCTCC
GCAACCTGATCATCGAGGACGAGAAGATGGTGGTGGTGGCGCTGCAGCCGCCTGCGGAGCTGGA
GGTGGGCTCGGCGGAGGTCATTGTGGAATCCCTGGCCCAGGGTGGCCTGGCCTCCCAGCTCCCA
GGCCAGAGACTGTGTGCAGAGGAGAGCTTCACCAGCCCAGGTGTCCTGGAGCCCTCCCTCATCA
TCACAGCTGCTGTCCCTGAGGACTGTGACACATAGCCCACTTTGGCCACCAGAGCCCACTTGGC
CCCACCCAATAAACCGTGTGGTGTTGGACTTGCGTA

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RefSeq Acc Id:

XR_494529

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	125,158,368 - 125,166,883 (-)	NCBI
Vero_WHO_p1.0	NW_023666054	29,202,992 - 29,212,114 (-)	NCBI

Sequence:

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GGTGAGGGAGGGAGGGGCTGCGGGCCGCCGTGGCTGCCTTCCGCTCGGCCGCTCGGGACCTGTA
GGCGCGGCGTGGGCTCCGCTCACCTGTCCGCGGCCGCCGTCCTCCCCAGTCCAGGATCCTCTCA
CTGTGCCAGGCCAGTCAGTTCGCGCTCATCCCGTGCCTTCTTTCCCCAAACTTGGATTTTTCCC
ACCAGGCCCTTCTTCATGACCCTGACCCCCCATCAGCATCCCCCCTGGCCAATCCAATATGGCC
CCCGGTCCTCGGGGGGCTGTCAAGTGTGTTCCTGCCCTCCGCGTGCACCCCTCACCTTGATCCA
AGCCCTCGTGCTGATAAATGTGATTATTTGAGTGGAGGCCAACTTCCCCTTTCTCTCTCTTCGA
CTCCAGGGGCTTTCTCTTGCATACGCTCGCTTGGGCTGGCCAGGGTGTCACTTCTGCTTCCTTG
CCCTCCAGACCATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCTGCAGGAGCTCAACAA
GCAGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTTGGGGGCCTGGTGTTTAAGGCG
CACTGGAGTGTCCTTGCCTGCTGCAGCCACTTCTTCCAGAGCCTCTACGGGGATGGCTCAGGAG
GTAGTGTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGACTTTTTCTACAC
TGGTCACCTCGCTCTCACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGTTGCGA
GTGCCAGAGGCCGTAGAGCTGTGCCAGAGCTTCAAGCCCAAAACTTCAGTGGGACAGGCAGCAG
GTGGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAGAATGTGAACAGCCTCCTCAAGGAGCCGGC
AGGCTTGCAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCCCAGAGATCAGGAGCCCAGA
GGCAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGAGAGAGCCCCTCCTCTC
TCTGTGGGAAACTCAAGCAGGCCTTGAAGCCTTGTTCCCCCGAGGACAAGGAACCTGAGGACTG
CAAAGTGCCTCCAAGGCCCTTCGAGGCTGAAAGTGACCAGCTGCAGGGCGGGAGTAATGAGTGG
GAAGTGGTGGTTCAAGTGGAGGACGACGGGGATGGTGATTACATGTCTGAGCCTGAGGCTGTGC
TGACCAGGAGGAAGTCAAATGTAATCCGAAAGGCCTGTGCAGCTGAGCCAGCCCTGAGCGCGGG
CTCCCTAGCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCGGTCGAATGCCCCACA
TGTCATAAAAAGTTCCTCAGCAAATATTATCTAAAAGTCCACAACAGGAAACATACTGGGGAGA
AACCCTTTGAGTGTCCCAAGTGTGGGAAGTGTTACTTTCGGAAGGAGAACCTCCTGGAGCATGA
AGCCCGGAATTGCATGAACCGCTCGGAACAGCATCCCCCCCTGCCCAGGCAGACTCTTCCCAGC
AGCAAGCGGAAGCCCGGGCAGAGGCTGCTGTCACAGGCAGAGGCCCCCGCTGATGCCGGCCCTG
CTTGCCCCTCACACTGCCAGGTCTTCACGTGCTCCGTGTGCCAGGAGACATTCCGCCGGAGGAT
GGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAGTGTTCCTCCTGCTCC
CAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAGCTGCATGGAGCCCCAAAGC
CCCATGCATGCCCCACCTGTGCCAAGTGCTTCCTGTCTCGGACAGAGCTGCAGCTGCATGAAGC
TTTCAAGCACCGTGGTGAGAAGCTGTTTGTGTGTGAGGAGTGTGGGCACCGGGCCTCGAGCCGG
AATGGCCTGCAGATGCACATCAAGGCCAAGCACAGGAATGAGAGGCCACACGTGTGTGAGTTCT
GCAGCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTGCGCACACACACGGGGGAGAA
GCCCTTCCAGTGCCACCTCTGTGGCAAGACCTTCCGAACCCAAGCCTGGACAAGCACAACCGCA
CTCACACTGGGGAAAGGCCCTTCAGTTGCGAGTTCTGTGAACAGCGCTTCACTGAGAAGGGGCC
CCTCCTGAGGCACGTGGCCAGCCGCCATCAGGAGGGCCGGCCCCACTTCTGCCAGATCTGCGGC
AAGACCTTCAAAGCCGTGGAACAACTGCGTGTGCATGTCAGACGACATAAGGGGGTGAGGAAGT
TCGAGTGCACCGAGTGTGGCTACAAGTTTACCCGGCAGGTA

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Protein Sequences


Protein RefSeqs	XP_007978932	(Get FASTA)	NCBI Sequence Viewer
	XP_007978933	(Get FASTA)	NCBI Sequence Viewer
	XP_007978934	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000017260.1

RefSeq Acc Id:	XP_007978934 ⟸ XM_007980743
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S8S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007978932 ⟸ XM_007980741
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S8S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007978933 ⟸ XM_007980742
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S8S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000017260 ⟸ ENSCSAT00000017788

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000000746	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017788.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	BTB/POZ_dom	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	ZBTB48	ENTREZGENE
PANTHER	DEFORMED WINGS-RELATED	UniProtKB/TrEMBL
	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0D9S8S1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar