Rreb1 (ras responsive element binding protein 1) - Rat Genome Database

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Gene: Rreb1 (ras responsive element binding protein 1) Rattus norvegicus
Analyze
Symbol: Rreb1
Name: ras responsive element binding protein 1
RGD ID: 1310904
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including positive regulation of brown fat cell differentiation; positive regulation of cell migration; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of DNA-templated transcription. Predicted to be located in fibrillar center and nuclear speck. Predicted to be active in nucleus. Orthologous to human RREB1 (ras responsive element binding protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306873; ras-responsive element-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81727,082,217 - 27,208,061 (-)NCBIGRCr8
mRatBN7.21726,876,687 - 27,002,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,876,697 - 27,002,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1726,734,931 - 26,860,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,338,506 - 28,464,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,683,567 - 26,809,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01727,539,137 - 27,718,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1727,539,133 - 27,665,266 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01729,453,342 - 29,632,680 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41733,125,272 - 33,251,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11733,130,948 - 33,187,331 (-)NCBI
Celera1726,508,633 - 26,634,463 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rreb1Ratamenorrhea  ISORREB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary amenorrheaClinVarPMID:21681106
Rreb1Ratmicrocephaly  ISORREB1 (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868 and PMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
Rreb1RatRASopathy  ISSRreb1 (Mus musculus)13592920 MouseDO 

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Object Symbol
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Original Reference(s)
Rreb1Rat(1->4)-beta-D-glucan multiple interactionsISORreb1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of RREB1 mRNACTDPMID:36331819
Rreb1Rat1,2-dichloroethane increases expressionISORreb1 (Mus musculus)6480464ethylene dichloride results in increased expression of RREB1 mRNACTDPMID:28960355
Rreb1Rat1,2-dimethylhydrazine decreases expressionISORreb1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of RREB1 mRNACTDPMID:22206623
Rreb1Rat17beta-estradiol increases expressionISORREB1 (Homo sapiens)6480464Estradiol results in increased expression of RREB1 mRNACTDPMID:23019147 and PMID:31614463
Rreb1Rat2,3',4,4',5-Pentachlorobiphenyl increases expressionISORreb1 (Mus musculus)64804642 more ...CTDPMID:31388691
Rreb1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORreb1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RREB1 mRNACTDPMID:21570461
Rreb1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RREB1 mRNACTDPMID:32109520
Rreb1Rat2,4,6-trinitrobenzenesulfonic acid multiple interactionsISORreb1 (Mus musculus)6480464Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in decreased expression of RREB1 mRNA]CTDPMID:18200517
Rreb1Rat2,4,6-trinitrobenzenesulfonic acid decreases expressionISORreb1 (Mus musculus)6480464Trinitrobenzenesulfonic Acid results in decreased expression of RREB1 mRNACTDPMID:18200517
Rreb1Rat2-hydroxypropanoic acid increases expressionISORREB1 (Homo sapiens)6480464Lactic Acid results in increased expression of RREB1 mRNACTDPMID:30851411
Rreb1Rat3,4-methylenedioxymethamphetamine decreases expressionISORreb1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of RREB1 mRNACTDPMID:20188158
Rreb1Rat4,4'-sulfonyldiphenol decreases methylationISORreb1 (Mus musculus)6480464bisphenol S results in decreased methylation of RREB1 exonCTDPMID:33297965
Rreb1Rat4,4'-sulfonyldiphenol affects methylationISORreb1 (Mus musculus)6480464bisphenol S affects the methylation of RREB1 geneCTDPMID:31683443
Rreb1Rat4,4'-sulfonyldiphenol decreases expressionISORreb1 (Mus musculus)6480464bisphenol S results in decreased expression of RREB1 mRNACTDPMID:39298647
Rreb1Rat4-hydroxyphenyl retinamide increases expressionISORreb1 (Mus musculus)6480464Fenretinide results in increased expression of RREB1 mRNACTDPMID:28973697
Rreb1Ratarsane affects methylationISORREB1 (Homo sapiens)6480464Arsenic affects the methylation of RREB1 geneCTDPMID:25304211
Rreb1Ratarsane multiple interactionsISORREB1 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of RREB1 mRNACTDPMID:39836092
Rreb1Ratarsenic atom affects methylationISORREB1 (Homo sapiens)6480464Arsenic affects the methylation of RREB1 geneCTDPMID:25304211
Rreb1Ratarsenic atom multiple interactionsISORREB1 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of RREB1 mRNACTDPMID:39836092
Rreb1Ratarsenite(3-) multiple interactionsISORREB1 (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to RREB1 mRNA]CTDPMID:32406909

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Biological Process
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Original Reference(s)
Rreb1Ratnegative regulation of DNA-templated transcription acts_upstream_of_or_withinISORreb1 (Mus musculus)1624291 PMID:21159816RGDPMID:21159816
Rreb1Ratnegative regulation of DNA-templated transcription acts_upstream_of_or_withinIEAUniProtKB:Q3UH06 and ensembl:ENSMUSP000001155991600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratnegative regulation of transcription by RNA polymerase II involved_inISORreb1 (Mus musculus)1624291 PMID:20133935RGDPMID:20133935
Rreb1Ratnegative regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q3UH06 and ensembl:ENSMUSP000001155991600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratnegative regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratnegative regulation of transcription by RNA polymerase II involved_inISORREB1 (Homo sapiens)1624291 PMID:20133935RGDPMID:20133935
Rreb1Ratpositive regulation of brown fat cell differentiation involved_inISORreb1 (Mus musculus)1624291 PMID:27923061RGDPMID:27923061
Rreb1Ratpositive regulation of brown fat cell differentiation involved_inIEAUniProtKB:Q3UH06 and ensembl:ENSMUSP000001155991600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratpositive regulation of epithelial cell migration involved_inISORREB1 (Homo sapiens)1624291 PMID:18394891RGDPMID:18394891
Rreb1Ratpositive regulation of epithelial cell migration involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratpositive regulation of lamellipodium morphogenesis involved_inISORREB1 (Homo sapiens)1624291 PMID:18394891RGDPMID:18394891
Rreb1Ratpositive regulation of lamellipodium morphogenesis involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratpositive regulation of mammary gland epithelial cell proliferation involved_inISORREB1 (Homo sapiens)1624291 PMID:18394891RGDPMID:18394891
Rreb1Ratpositive regulation of mammary gland epithelial cell proliferation involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratpositive regulation of substrate adhesion-dependent cell spreading involved_inISORREB1 (Homo sapiens)1624291 PMID:18394891RGDPMID:18394891
Rreb1Ratpositive regulation of substrate adhesion-dependent cell spreading involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratpositive regulation of transcription by RNA polymerase II involved_inISORREB1 (Homo sapiens)1624291 PMID:8816445RGDPMID:8816445
Rreb1Ratpositive regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratpositive regulation of wound healing, spreading of epidermal cells involved_inISORREB1 (Homo sapiens)1624291 PMID:18394891RGDPMID:18394891
Rreb1Ratpositive regulation of wound healing, spreading of epidermal cells involved_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component

  
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Original Reference(s)
Rreb1Ratfibrillar center located_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratfibrillar center located_inISORREB1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Rreb1Ratnuclear speck located_inIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratnuclear speck located_inISORREB1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Rreb1Ratnucleus is_active_inIBAFB:FBgn0003053 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
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Original Reference(s)
Rreb1RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISORREB1 (Homo sapiens)1624291 PMID:8816445RGDPMID:8816445
Rreb1RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIBAPANTHER:PTN002509549 and UniProtKB:Q927661600115GO_REF:0000033GO_CentralGO_REF:0000033
Rreb1RatDNA-binding transcription factor activity enablesIEAUniProtKB:Q3UH06 and ensembl:ENSMUSP000001155991600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1RatDNA-binding transcription factor activity enablesISORreb1 (Mus musculus)1624291 PMID:21159816RGDPMID:21159816
Rreb1RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISORREB1 (Homo sapiens)1624291 PMID:20133935RGDPMID:20133935
Rreb1RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIBAPANTHER:PTN002509549 and UniProtKB:Q927661600115GO_REF:0000033GO_CentralGO_REF:0000033
Rreb1RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesISORREB1 (Homo sapiens)1624291 PMID:8816445RGDPMID:8816445
Rreb1RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesIEAUniProtKB:Q92766 and ensembl:ENSP000003692701600115GO_REF:0000107EnsemblGO_REF:0000107
Rreb1Ratzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043
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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8816445   PMID:12477932   PMID:18394891   PMID:19056867   PMID:20133935   PMID:21159816   PMID:27923061  



Rreb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81727,082,217 - 27,208,061 (-)NCBIGRCr8
mRatBN7.21726,876,687 - 27,002,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,876,697 - 27,002,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1726,734,931 - 26,860,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,338,506 - 28,464,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,683,567 - 26,809,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01727,539,137 - 27,718,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1727,539,133 - 27,665,266 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01729,453,342 - 29,632,680 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41733,125,272 - 33,251,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11733,130,948 - 33,187,331 (-)NCBI
Celera1726,508,633 - 26,634,463 (-)NCBICelera
Cytogenetic Map17p12NCBI
RREB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3867,107,743 - 7,251,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl67,107,597 - 7,251,980 (+)EnsemblGRCh38hg38GRCh38
GRCh3767,107,976 - 7,252,213 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3667,053,263 - 7,196,194 (+)NCBINCBI36Build 36hg18NCBI36
Build 3467,084,476 - 7,196,194NCBI
Celera68,337,583 - 8,481,974 (+)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef66,984,113 - 7,128,514 (+)NCBIHuRef
CHM1_167,109,932 - 7,254,330 (+)NCBICHM1_1
T2T-CHM13v2.066,977,349 - 7,121,600 (+)NCBIT2T-CHM13v2.0
Rreb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,962,362 - 38,135,981 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1337,962,376 - 38,135,981 (+)EnsemblGRCm39 Ensembl
GRCm381337,778,382 - 37,952,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1337,778,400 - 37,952,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371337,917,907 - 38,043,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361337,833,505 - 37,959,468 (+)NCBIMGSCv36mm8
Celera1338,946,939 - 39,073,602 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1317.7NCBI
Rreb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554656,570,522 - 6,636,934 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554656,572,593 - 6,757,423 (-)NCBIChiLan1.0ChiLan1.0
RREB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2521,747,574 - 21,892,126 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1617,744,041 - 17,888,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v066,945,205 - 7,089,757 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.167,160,933 - 7,356,556 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl67,257,875 - 7,356,544 (+)Ensemblpanpan1.1panPan2
RREB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,120,505 - 7,255,290 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,120,472 - 7,255,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,123,955 - 7,258,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,202,128 - 7,337,072 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,190,064 - 7,334,484 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,055,626 - 7,190,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,082,329 - 7,217,217 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,414,770 - 8,549,540 (+)NCBIUU_Cfam_GSD_1.0
Rreb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494617,052,502 - 17,233,119 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365345,324,430 - 5,385,707 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365345,321,488 - 5,390,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RREB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.174,512,286 - 4,639,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.274,478,004 - 4,652,467 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RREB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11764,938,831 - 65,084,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1764,938,800 - 65,009,057 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660447,066,464 - 7,212,615 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rreb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475618,259,884 - 18,382,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475618,259,884 - 18,383,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rreb1
594 total Variants


Assembly: mRatBN7.2
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 26894699 26894700 C T snv WKY/NCrl (2019NG), European Variation Archive Release 3, European Variation Archive Release 4, European Variation Archive Release 6, GK/FarMcwi (2019), SHR/NHsd (2021), WKY/NCrl (2019), WKY/N (2020), BUF/MnaMcwi (2022), GK/FarMcwi (2019NG), LEW/Crl (2019NG), LEW/Crl (2019) View more Information


Assembly: RGSC_v3.4
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 33143281 33143282 C T snv GK/Ox (ICL), HCR/1Mco (UMich), WKY/NHsd (ICL), MR/N (KNAW), WKY/N (KNAW), BBDP/WorN (ICL), LCR/1Mco (UMich), LEW/Crl (ICL), LEW/NCrl (ICL), MNS/Gib (ICL), WKY/NCrl (ICL) View more Information
17 33144726 33144727 A G snv SR/JrHsd (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW) View more Information


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 29470907 29470908 G T snv BBDP/WorN (KNAW) View more Information
17 29471351 29471352 C T snv MR/N (KNAW), ZFDM (KyushuU), ZF (KyushuU), BBDP/WorN (KNAW), GK/Ox (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), MNS/Gib (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), BUF/MNa (KyushuU), HTX/Kyo (KyushuU) View more Information
17 29472796 29472797 A G snv FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), SR/JrHsd (MCW) View more Information


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 27556702 27556703 G T snv BBDP/Wor (RGD) View more Information
17 27557146 27557147 C T snv LEW/Crl (RGD), CDR, CDS, MR/N (MCW), WKY/N (MCW), BBDP/Wor (RGD), GK/Ox (RGD), WKY/N (2020), LEW/NCrlBR (RGD), MNS/Gib (RGD), WKY/NCrl (RGD), WKY/NHsd (RGD), GK/FarMcwi (2019), LEW/Crl (2019), WKY/NCrl (2019) View more Information
17 27558591 27558592 A G snv SR/JrHsd (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:309
Count of miRNA genes:205
Interacting mature miRNAs:234
Transcripts:ENSRNOT00000060218
Prediction methods:Miranda, Pita
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat

1 to 10 of 38 rows
RH133262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21726,974,053 - 26,974,269 (+)MAPPERmRatBN7.2
Rnor_6.01727,636,466 - 27,636,681NCBIRnor6.0
Rnor_5.01729,550,684 - 29,550,899UniSTSRnor5.0
RGSC_v3.41733,222,933 - 33,223,148UniSTSRGSC3.4
Celera1726,606,022 - 26,606,237UniSTS
RH 3.4 Map17341.4UniSTS
Cytogenetic Map17p12UniSTS
AA859655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21726,876,810 - 26,877,000 (+)MAPPERmRatBN7.2
Rnor_6.01727,539,262 - 27,539,451NCBIRnor6.0
Rnor_5.01729,453,467 - 29,453,656UniSTSRnor5.0
RGSC_v3.41733,125,397 - 33,125,586UniSTSRGSC3.4
Celera1726,508,758 - 26,508,947UniSTS
RH 3.4 Map17353.3UniSTS
Cytogenetic Map17p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000060218   ⟹   ENSRNOP00000056967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1726,876,697 - 27,002,615 (-)Ensembl
Rnor_6.0 Ensembl1727,539,148 - 27,665,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079298   ⟹   ENSRNOP00000073072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1726,876,697 - 27,002,615 (-)Ensembl
Rnor_6.0 Ensembl1727,539,133 - 27,602,934 (-)Ensembl
RefSeq Acc Id: NM_001107348   ⟹   NP_001100818
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81727,082,217 - 27,208,061 (-)NCBI
mRatBN7.21726,876,687 - 27,002,554 (-)NCBI
Rnor_6.01727,539,137 - 27,665,266 (-)NCBI
Rnor_5.01729,453,342 - 29,632,680 (-)NCBI
RGSC_v3.41733,125,272 - 33,251,491 (-)RGD
Celera1726,508,633 - 26,634,463 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253814   ⟹   XP_006253876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81727,082,217 - 27,141,078 (-)NCBI
mRatBN7.21726,876,687 - 26,935,597 (-)NCBI
Rnor_6.01727,539,138 - 27,718,878 (-)NCBI
Rnor_5.01729,453,342 - 29,632,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253817   ⟹   XP_006253879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81727,082,217 - 27,140,369 (-)NCBI
mRatBN7.21726,876,687 - 26,934,850 (-)NCBI
Rnor_6.01727,539,138 - 27,597,802 (-)NCBI
Rnor_5.01729,453,342 - 29,632,680 (-)NCBI
Sequence:
Protein RefSeqs NP_001100818 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253876 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253879 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98267 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056967
  ENSRNOP00000056967.2
  ENSRNOP00000073072
  ENSRNOP00000073072.1
RefSeq Acc Id: NP_001100818   ⟸   NM_001107348
- UniProtKB: D3ZI11 (UniProtKB/TrEMBL),   A6J7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253876   ⟸   XM_006253814
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4K0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253879   ⟸   XM_006253817
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000073072   ⟸   ENSRNOT00000079298
Ensembl Acc Id: ENSRNOP00000056967   ⟸   ENSRNOT00000060218
C2H2-type


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700398
Promoter ID:EPDNEW_R10921
Type:initiation region
Name:Rreb1_1
Description:ras responsive element binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01727,665,205 - 27,665,265EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-9670 BioCyc
Ensembl Genes ENSRNOG00000015701 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060218 ENTREZGENE
  ENSRNOT00000060218.5 UniProtKB/TrEMBL
  ENSRNOT00000079298 ENTREZGENE
  ENSRNOT00000079298.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro RREB1 UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:306873 UniProtKB/TrEMBL
NCBI Gene 306873 ENTREZGENE
PANTHER RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
  RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Rreb1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015701 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K4K0 ENTREZGENE, UniProtKB/TrEMBL
  A6J7B7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZI11 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rreb1  ras responsive element binding protein 1   Rreb1_predicted  ras responsive element binding protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rreb1_predicted  ras responsive element binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED