rs3323047377 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Variant: rs3323047377 -  Rattus norvegicus

RGD ID: 147145576
RS ID: rs3323047377
Associated ss Id(s): ss11828622821
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Rreb1  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
mRatBN7.2 17 26,894,699
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Rreb1
Accession:NM_001107348
Location:EXON
Amino Acid Prediction: V to I (nonsynonymous)
Amino Acid Position: 909
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.288 -1.909 +0.621 174   NP_001100818   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MTSNPPTGLEGSDLSSVNTMMSAVMSISSVTENGGSPQGIKSPMKPPGPNRIGRRNQETKEEKSSYNCPLCEKVCTTQHQ
LTMHIRQHNTDTGGADHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRHMKIHEKDTNSTTAAAPP
SPLKRRRLSSKRKLSHDAESEREDPGPAKKTVEDGQSSGLDKMADETFHCPVCFKEFVCKYGLETHMETHSDNPLRCDIC
CVTFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFHDLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDT
CDKAFPMLSSLILHRQTHIPADQGREKLQTKTLAADTLDQKVFLAFLGLQHTKDVKPAPAEELLPDDSHTIQLQTLKCQL
PQDPGCTNVLSLSPFEAASLGGSLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASA
PPQISLPPLSKAPATPLQAIFKHMPPLKPKPLVAPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSSA
HLLQSKSGIQPNTSTQLFLQQPGVELPGQAEMKAQLEQDSIIEALLPLNMEAKIKQEITEGDLKAIMTGPSGKKTPAMRK
VLYPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRK
KHLKATRKDIEKNIQYVSSSTAELVDALCSPETVCRLCGEDLKHYRALRIHMRTHCSRGLGGCHKGRKPFECKECNAAFA
AKRNCIHHILKQHLHVPEKDIESYVLATDAGLGPADTAAEASSREESSCVTFAECKPLTTFLEPQNGFLHSSPTQPLPSH
ISVKLEPASSFATDFNEPLDFSQKGLALIQVKQENMSSLLNSSSSSALYDCSMEPIDLSIPKSGKRGDKDTVVSSDAKKP
EPEAGKAEQLSPHPPPCPTLSVTVEPKGSLDNPAGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSSALISNAPLLGSSAL
LNSASLLRPLRPKPPLLLPKPAMTEELPPLASIAQIISSVSSAPTLLKTKAADPGPSSTSSNAVATDSPGGSIPKASPSP
TDIPSSREPTDPAPTASSPEEASPPEQGPAASSRKRGRKRGMRNRPLPNSSAVDLDSSGEFASIEKMLATTDTNKFSPFL
QTAEDTQEEVAGTPADHRGPTEEEQGSSAEDRLLRAKRNSYANCLQKINCPHCPRVFPWASSLQRHMLTHTDSQSDTDTL
TTPGEVLDLTARDKEQPTSEGASELSPATQDLTETEAKAEAAPPEEEEEEKGTEENPEPELECRVEESSGDADAPEEDTA
SNQSLDLDFATKMMDFKLAESEAGAVDSQGPAQQEPKHACNTCGKNFKFLSTLSRHRKAHGCQEPKEEEEAPSLENESLG
RAVEGPSPSPEPEETPAESSATDPTAGTGEASGERQNEDTESPSDGEGTAEKRGDSDRRPKTDSPKSMASKADKRKKVCS
VCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEGSEDESTHSANN
PASENEAESAPSTSNHVAITRSRKESLANSGKECGREEKAIAEQATEPSAPKEPGSPGETDPQSPAAIVQDLLELCGTRP
APILAATDGASQLLGME*

Gene Symbol:Rreb1
Accession:XM_006253814
Location:EXON
Amino Acid Prediction: V to I (nonsynonymous)
Amino Acid Position: 909
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
benign alignment   NO -1.502 -2.448 +0.946 427   XP_006253876   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MTSNPPTGLEGSDLSSVNTMMSAVMSISSVTENGGSPQGIKSPMKPPGPNRIGRRNQETKEEKSSYNCPLCEKVCTTQHQ
LTMHIRQHNTDTGGADHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRHMKIHEKDTNSTTAAAPP
SPLKRRRLSSKRKLSHDAESEREDPGPAKKTVEDGQSSGLDKMADETFHCPVCFKEFVCKYGLETHMETHSDNPLRCDIC
CVTFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFHDLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDT
CDKAFPMLSSLILHRQTHIPADQGREKLQTKTLAADTLDQKVFLAFLGLQHTKDVKPAPAEELLPDDSHTIQLQTLKCQL
PQDPGCTNVLSLSPFEAASLGGSLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASA
PPQISLPPLSKAPATPLQAIFKHMPPLKPKPLVAPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSSA
HLLQSKSGIQPNTSTQLFLQQPGVELPGQAEMKAQLEQDSIIEALLPLNMEAKIKQEITEGDLKAIMTGPSGKKTPAMRK
VLYPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRK
KHLKATRKDIEKNIQYVSSSTAELVDALCSPETVCRLCGEDLKHYRALRIHMRTHCSRGLGGCHKGRKPFECKECNAAFA
AKRNCIHHILKQHLHVPEKDIESYVLATDAGLGPADTAAEASSREESSCVTFAECKPLTTFLEPQNGFLHSSPTQPLPSH
ISVKLEPASSFATDFNEPLDFSQKGLALIQVKQENMSSLLNSSSSSALYDCSMEPIDLSIPKSGKRGDKDTVVSSDAKKP
EPEAGKAEQLSPHPPPCPTLSVTVEPKGSLDNPAGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSSALISNAPLLGSSAL
LNSASLLRPLRPKPPLLLPKPAMTEELPPLASIAQIISSVSSAPTLLKTKAADPGPSSTSSNAVATDSPGGSIPKASPSP
TDIPSSREPTDPAPTASSPEEASPPEQGPAASSRKRGRKRGMRNRPLPNSSAVDLDSSGEFASIEKMLATTDTNKFSPFL
QTAEDTQEEVAGTPADHRGPTEEEQGSSAEDRLLRAKRNSYANCLQKINCPHCPRVFPWASSLQRHMLTHTGQKPFPCQK
CDAFFSTKSNCERHQLRKHGVTTCSLRRNGLIPPKEGDVGSHDSTDSQSDTDTLTTPGEVLDLTARDKEQPTSEGASELS
PATQDLTETEAKAEAAPPEEEEEEKGTEENPEPELECRVEESSGDADAPEEDTASNQSLDLDFATKMMDFKLAESEAGAV
DSQGPAQQEPKHACNTCGKNFKFLSTLSRHRKAHGCQEPKEEEEAPSLENESLGRAVEGPSPSPEPEETPAESSATDPTA
GTGEASGERQNEDTESPSDGEGTAEKRGDSDRRPKTDSPKSMASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYK
CQTCERTFTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEGSEDESTHSANNPASENEAESAPSTSNHVAITRSRKES
LANSGKECGREEKAIAEQATEPSAPKEPGSPGETDPQSPAAIVQDLLELCGTRPAPILAATDGASQLLGME*

Gene Symbol:Rreb1
Accession:XM_006253817
Location:EXON
Amino Acid Prediction: V to I (nonsynonymous)
Amino Acid Position: 827
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
benign alignment   NO -1.502 -2.448 +0.946 427   XP_006253879   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MHIRQHNTDTGGADHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRHMKIHEKDTNSTTAAAPPSP
LKRRRLSSKRKLSHDAESEREDPGPAKKTVEDGQSSGLDKMADETFHCPVCFKEFVCKYGLETHMETHSDNPLRCDICCV
TFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFHDLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDTCD
KAFPMLSSLILHRQTHIPADQGREKLQTKTLAADTLDQKVFLAFLGLQHTKDVKPAPAEELLPDDSHTIQLQTLKCQLPQ
DPGCTNVLSLSPFEAASLGGSLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASAPP
QISLPPLSKAPATPLQAIFKHMPPLKPKPLVAPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSSAHL
LQSKSGIQPNTSTQLFLQQPGVELPGQAEMKAQLEQDSIIEALLPLNMEAKIKQEITEGDLKAIMTGPSGKKTPAMRKVL
YPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKH
LKATRKDIEKNIQYVSSSTAELVDALCSPETVCRLCGEDLKHYRALRIHMRTHCSRGLGGCHKGRKPFECKECNAAFAAK
RNCIHHILKQHLHVPEKDIESYVLATDAGLGPADTAAEASSREESSCVTFAECKPLTTFLEPQNGFLHSSPTQPLPSHIS
VKLEPASSFATDFNEPLDFSQKGLALIQVKQENMSSLLNSSSSSALYDCSMEPIDLSIPKSGKRGDKDTVVSSDAKKPEP
EAGKAEQLSPHPPPCPTLSVTVEPKGSLDNPAGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSSALISNAPLLGSSALLN
SASLLRPLRPKPPLLLPKPAMTEELPPLASIAQIISSVSSAPTLLKTKAADPGPSSTSSNAVATDSPGGSIPKASPSPTD
IPSSREPTDPAPTASSPEEASPPEQGPAASSRKRGRKRGMRNRPLPNSSAVDLDSSGEFASIEKMLATTDTNKFSPFLQT
AEDTQEEVAGTPADHRGPTEEEQGSSAEDRLLRAKRNSYANCLQKINCPHCPRVFPWASSLQRHMLTHTGQKPFPCQKCD
AFFSTKSNCERHQLRKHGVTTCSLRRNGLIPPKEGDVGSHDSTDSQSDTDTLTTPGEVLDLTARDKEQPTSEGASELSPA
TQDLTETEAKAEAAPPEEEEEEKGTEENPEPELECRVEESSGDADAPEEDTASNQSLDLDFATKMMDFKLAESEAGAVDS
QGPAQQEPKHACNTCGKNFKFLSTLSRHRKAHGCQEPKEEEEAPSLENESLGRAVEGPSPSPEPEETPAESSATDPTAGT
GEASGERQNEDTESPSDGEGTAEKRGDSDRRPKTDSPKSMASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYKCQ
TCERTFTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEGSEDESTHSANNPASENEAESAPSTSNHVAITRSRKESLA
NSGKECGREEKAIAEQATEPSAPKEPGSPGETDPQSPAAIVQDLLELCGTRPAPILAATDGASQLLGME*
LEW/Crl (2019NG) GK/FarMcwi (2019) LEW/Crl (2019) WKY/NCrl (2019) WKY/N (2020) BUF/MnaMcwi (2022)
GK/FarMcwi (2019NG) WKY/NCrl (2019NG) SHR/NHsd (2021)