RGD:111184600 Rat Genome Database

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Variant: RGD:111184600 -  Rattus norvegicus

RGD ID: 111184600
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Rreb1  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
Rnor_6.0 17 27,557,146
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Rreb1
Accession:NM_001107348
Location:EXON
Amino Acid Prediction: V to I (nonsynonymous)
Amino Acid Position: 909
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.288 -1.909 +0.621 174   NP_001100818   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MTSNPPTGLEGSDLSSVNTMMSAVMSISSVTENGGSPQGIKSPMKPPGPNRIGRRNQETKEEKSSYNCPLCEKVCTTQHQ
LTMHIRQHNTDTGGADHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRHMKIHEKDTNSTTAAAPP
SPLKRRRLSSKRKLSHDAESEREDPGPAKKTVEDGQSSGLDKMADETFHCPVCFKEFVCKYGLETHMETHSDNPLRCDIC
CVTFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFHDLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDT
CDKAFPMLSSLILHRQTHIPADQGREKLQTKTLAADTLDQKVFLAFLGLQHTKDVKPAPAEELLPDDSHTIQLQTLKCQL
PQDPGCTNVLSLSPFEAASLGGSLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASA
PPQISLPPLSKAPATPLQAIFKHMPPLKPKPLVAPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSSA
HLLQSKSGIQPNTSTQLFLQQPGVELPGQAEMKAQLEQDSIIEALLPLNMEAKIKQEITEGDLKAIMTGPSGKKTPAMRK
VLYPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRK
KHLKATRKDIEKNIQYVSSSTAELVDALCSPETVCRLCGEDLKHYRALRIHMRTHCSRGLGGCHKGRKPFECKECNAAFA
AKRNCIHHILKQHLHVPEKDIESYVLATDAGLGPADTAAEASSREESSCVTFAECKPLTTFLEPQNGFLHSSPTQPLPSH
ISVKLEPASSFATDFNEPLDFSQKGLALIQVKQENMSSLLNSSSSSALYDCSMEPIDLSIPKSGKRGDKDTVVSSDAKKP
EPEAGKAEQLSPHPPPCPTLSVTVEPKGSLDNPAGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSSALISNAPLLGSSAL
LNSASLLRPLRPKPPLLLPKPAMTEELPPLASIAQIISSVSSAPTLLKTKAADPGPSSTSSNAVATDSPGGSIPKASPSP
TDIPSSREPTDPAPTASSPEEASPPEQGPAASSRKRGRKRGMRNRPLPNSSAVDLDSSGEFASIEKMLATTDTNKFSPFL
QTAEDTQEEVAGTPADHRGPTEEEQGSSAEDRLLRAKRNSYANCLQKINCPHCPRVFPWASSLQRHMLTHTDSQSDTDTL
TTPGEVLDLTARDKEQPTSEGASELSPATQDLTETEAKAEAAPPEEEEEEKGTEENPEPELECRVEESSGDADAPEEDTA
SNQSLDLDFATKMMDFKLAESEAGAVDSQGPAQQEPKHACNTCGKNFKFLSTLSRHRKAHGCQEPKEEEEAPSLENESLG
RAVEGPSPSPEPEETPAESSATDPTAGTGEASGERQNEDTESPSDGEGTAEKRGDSDRRPKTDSPKSMASKADKRKKVCS
VCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEGSEDESTHSANN
PASENEAESAPSTSNHVAITRSRKESLANSGKECGREEKAIAEQATEPSAPKEPGSPGETDPQSPAAIVQDLLELCGTRP
APILAATDGASQLLGME*

Gene Symbol:Rreb1
Accession:XM_006253814
Location:EXON
Amino Acid Prediction: V to I (nonsynonymous)
Amino Acid Position: 909
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
benign alignment   NO -1.502 -2.448 +0.946 427   XP_006253876   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MTSNPPTGLEGSDLSSVNTMMSAVMSISSVTENGGSPQGIKSPMKPPGPNRIGRRNQETKEEKSSYNCPLCEKVCTTQHQ
LTMHIRQHNTDTGGADHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRHMKIHEKDTNSTTAAAPP
SPLKRRRLSSKRKLSHDAESEREDPGPAKKTVEDGQSSGLDKMADETFHCPVCFKEFVCKYGLETHMETHSDNPLRCDIC
CVTFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFHDLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDT
CDKAFPMLSSLILHRQTHIPADQGREKLQTKTLAADTLDQKVFLAFLGLQHTKDVKPAPAEELLPDDSHTIQLQTLKCQL
PQDPGCTNVLSLSPFEAASLGGSLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASA
PPQISLPPLSKAPATPLQAIFKHMPPLKPKPLVAPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSSA
HLLQSKSGIQPNTSTQLFLQQPGVELPGQAEMKAQLEQDSIIEALLPLNMEAKIKQEITEGDLKAIMTGPSGKKTPAMRK
VLYPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRK
KHLKATRKDIEKNIQYVSSSTAELVDALCSPETVCRLCGEDLKHYRALRIHMRTHCSRGLGGCHKGRKPFECKECNAAFA
AKRNCIHHILKQHLHVPEKDIESYVLATDAGLGPADTAAEASSREESSCVTFAECKPLTTFLEPQNGFLHSSPTQPLPSH
ISVKLEPASSFATDFNEPLDFSQKGLALIQVKQENMSSLLNSSSSSALYDCSMEPIDLSIPKSGKRGDKDTVVSSDAKKP
EPEAGKAEQLSPHPPPCPTLSVTVEPKGSLDNPAGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSSALISNAPLLGSSAL
LNSASLLRPLRPKPPLLLPKPAMTEELPPLASIAQIISSVSSAPTLLKTKAADPGPSSTSSNAVATDSPGGSIPKASPSP
TDIPSSREPTDPAPTASSPEEASPPEQGPAASSRKRGRKRGMRNRPLPNSSAVDLDSSGEFASIEKMLATTDTNKFSPFL
QTAEDTQEEVAGTPADHRGPTEEEQGSSAEDRLLRAKRNSYANCLQKINCPHCPRVFPWASSLQRHMLTHTGQKPFPCQK
CDAFFSTKSNCERHQLRKHGVTTCSLRRNGLIPPKEGDVGSHDSTDSQSDTDTLTTPGEVLDLTARDKEQPTSEGASELS
PATQDLTETEAKAEAAPPEEEEEEKGTEENPEPELECRVEESSGDADAPEEDTASNQSLDLDFATKMMDFKLAESEAGAV
DSQGPAQQEPKHACNTCGKNFKFLSTLSRHRKAHGCQEPKEEEEAPSLENESLGRAVEGPSPSPEPEETPAESSATDPTA
GTGEASGERQNEDTESPSDGEGTAEKRGDSDRRPKTDSPKSMASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYK
CQTCERTFTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEGSEDESTHSANNPASENEAESAPSTSNHVAITRSRKES
LANSGKECGREEKAIAEQATEPSAPKEPGSPGETDPQSPAAIVQDLLELCGTRPAPILAATDGASQLLGME*

Gene Symbol:Rreb1
Accession:XM_006253817
Location:EXON
Amino Acid Prediction: V to I (nonsynonymous)
Amino Acid Position: 827
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
benign alignment   NO -1.502 -2.448 +0.946 427   XP_006253879   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MHIRQHNTDTGGADHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRHMKIHEKDTNSTTAAAPPSP
LKRRRLSSKRKLSHDAESEREDPGPAKKTVEDGQSSGLDKMADETFHCPVCFKEFVCKYGLETHMETHSDNPLRCDICCV
TFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFHDLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDTCD
KAFPMLSSLILHRQTHIPADQGREKLQTKTLAADTLDQKVFLAFLGLQHTKDVKPAPAEELLPDDSHTIQLQTLKCQLPQ
DPGCTNVLSLSPFEAASLGGSLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASAPP
QISLPPLSKAPATPLQAIFKHMPPLKPKPLVAPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSSAHL
LQSKSGIQPNTSTQLFLQQPGVELPGQAEMKAQLEQDSIIEALLPLNMEAKIKQEITEGDLKAIMTGPSGKKTPAMRKVL
YPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKH
LKATRKDIEKNIQYVSSSTAELVDALCSPETVCRLCGEDLKHYRALRIHMRTHCSRGLGGCHKGRKPFECKECNAAFAAK
RNCIHHILKQHLHVPEKDIESYVLATDAGLGPADTAAEASSREESSCVTFAECKPLTTFLEPQNGFLHSSPTQPLPSHIS
VKLEPASSFATDFNEPLDFSQKGLALIQVKQENMSSLLNSSSSSALYDCSMEPIDLSIPKSGKRGDKDTVVSSDAKKPEP
EAGKAEQLSPHPPPCPTLSVTVEPKGSLDNPAGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSSALISNAPLLGSSALLN
SASLLRPLRPKPPLLLPKPAMTEELPPLASIAQIISSVSSAPTLLKTKAADPGPSSTSSNAVATDSPGGSIPKASPSPTD
IPSSREPTDPAPTASSPEEASPPEQGPAASSRKRGRKRGMRNRPLPNSSAVDLDSSGEFASIEKMLATTDTNKFSPFLQT
AEDTQEEVAGTPADHRGPTEEEQGSSAEDRLLRAKRNSYANCLQKINCPHCPRVFPWASSLQRHMLTHTGQKPFPCQKCD
AFFSTKSNCERHQLRKHGVTTCSLRRNGLIPPKEGDVGSHDSTDSQSDTDTLTTPGEVLDLTARDKEQPTSEGASELSPA
TQDLTETEAKAEAAPPEEEEEEKGTEENPEPELECRVEESSGDADAPEEDTASNQSLDLDFATKMMDFKLAESEAGAVDS
QGPAQQEPKHACNTCGKNFKFLSTLSRHRKAHGCQEPKEEEEAPSLENESLGRAVEGPSPSPEPEETPAESSATDPTAGT
GEASGERQNEDTESPSDGEGTAEKRGDSDRRPKTDSPKSMASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYKCQ
TCERTFTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEGSEDESTHSANNPASENEAESAPSTSNHVAITRSRKESLA
NSGKECGREEKAIAEQATEPSAPKEPGSPGETDPQSPAAIVQDLLELCGTRPAPILAATDGASQLLGME*