Bbx (BBX high mobility group box domain containing) - Rat Genome Database

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Gene: Bbx (BBX high mobility group box domain containing) Rattus norvegicus
Analyze
Symbol: Bbx
Name: BBX high mobility group box domain containing
RGD ID: 1309769
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in bone development and regulation of transcription by RNA polymerase II. Predicted to localize to cytosol and nucleoplasm. Orthologous to human BBX (BBX high mobility group box domain containing); INTERACTS WITH 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BBX, HMG-box containing; bobby sox homolog; HMG box transcription factor BBX; HMG box transcription factor BBX-like; LOC100912484; LOC303970
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: BbxTn(sb-T2/Bart3)2.291Mcwi  
Genetic Models: F344-BbxTn(sb-T2/Bart3)2.291Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21150,381,249 - 50,628,934 (+)NCBI
Rnor_6.0 Ensembl1153,081,025 - 53,228,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01152,983,286 - 53,228,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01156,153,038 - 56,397,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41151,655,446 - 51,799,132 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11151,765,817 - 51,857,084 (+)NCBI
Celera1150,128,289 - 50,267,567 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

References

Additional References at PubMed
PMID:12477932   PMID:22876197   PMID:27465138  


Genomics

Comparative Map Data
Bbx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21150,381,249 - 50,628,934 (+)NCBI
Rnor_6.0 Ensembl1153,081,025 - 53,228,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01152,983,286 - 53,228,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01156,153,038 - 56,397,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41151,655,446 - 51,799,132 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11151,765,817 - 51,857,084 (+)NCBI
Celera1150,128,289 - 50,267,567 (+)NCBICelera
Cytogenetic Map11q21NCBI
BBX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3107,522,936 - 107,811,339 (+)EnsemblGRCh38hg38GRCh38
GRCh383107,522,962 - 107,811,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373107,241,809 - 107,530,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363108,724,480 - 109,007,399 (+)NCBINCBI36hg18NCBI36
Build 343108,724,479 - 109,007,395NCBI
Celera3105,638,147 - 105,926,340 (+)NCBI
Cytogenetic Map3q13.12NCBI
HuRef3104,615,349 - 104,903,664 (+)NCBIHuRef
CHM1_13107,206,091 - 107,494,354 (+)NCBICHM1_1
Bbx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391650,012,207 - 50,252,829 (-)NCBIGRCm39mm39
GRCm39 Ensembl1650,012,207 - 50,252,753 (-)Ensembl
GRCm381650,191,844 - 50,432,466 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1650,191,844 - 50,432,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv371650,191,957 - 50,432,502 (-)NCBIGRCm37mm9NCBIm37
MGSCv361650,116,507 - 50,351,729 (-)NCBImm8
Celera1650,536,366 - 50,776,574 (-)NCBICelera
Cytogenetic Map16B5NCBI
Bbx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554278,339,092 - 8,470,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBIChiLan1.0ChiLan1.0
BBX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13111,590,259 - 111,878,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3111,728,655 - 111,872,357 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03104,655,522 - 104,943,193 (+)NCBIMhudiblu_PPA_v0panPan3
BBX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13312,833,030 - 13,101,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3312,833,053 - 13,101,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3312,938,918 - 13,207,222 (+)NCBI
ROS_Cfam_1.03312,998,286 - 13,266,737 (+)NCBI
UMICH_Zoey_3.13312,868,445 - 13,139,431 (+)NCBI
UNSW_CanFamBas_1.03312,935,044 - 13,205,312 (+)NCBI
UU_Cfam_GSD_1.03313,346,521 - 13,615,301 (+)NCBI
Bbx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602141,693,408 - 141,961,974 (-)NCBI
SpeTri2.0NW_004936645883,650 - 1,152,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13151,722,085 - 152,005,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113151,718,376 - 152,005,091 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213160,753,551 - 160,875,287 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BBX
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,982,582 - 73,259,591 (-)NCBI
ChlSab1.1 Ensembl2272,988,468 - 73,092,151 (-)Ensembl
Vero_WHO_p1.0NW_02366604193,226,649 - 93,500,833 (+)NCBI
Bbx
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473141,789,470 - 42,054,333 (-)NCBI

Position Markers
D11Got107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,515,470 - 50,515,730 (+)MAPPER
Rnor_6.01153,115,853 - 53,116,112NCBIRnor6.0
Rnor_5.01156,285,588 - 56,285,847UniSTSRnor5.0
RGSC_v3.41151,690,303 - 51,690,562UniSTSRGSC3.4
Celera1150,163,240 - 50,163,472UniSTS
Cytogenetic Map11q21UniSTS
D11Got130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,517,717 - 50,517,895 (+)MAPPER
Rnor_6.01153,118,100 - 53,118,277NCBIRnor6.0
Rnor_5.01156,287,835 - 56,288,012UniSTSRnor5.0
RGSC_v3.41151,692,550 - 51,692,727UniSTSRGSC3.4
Celera1150,165,460 - 50,165,638UniSTS
Cytogenetic Map11q21UniSTS
D11Got106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,515,478 - 50,515,778 (+)MAPPER
Rnor_6.01153,115,861 - 53,116,160NCBIRnor6.0
Rnor_5.01156,285,596 - 56,285,895UniSTSRnor5.0
RGSC_v3.41151,690,311 - 51,690,610UniSTSRGSC3.4
Celera1150,163,248 - 50,163,520UniSTS
Cytogenetic Map11q21UniSTS
RH138485  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,553,082 - 50,553,203 (+)MAPPER
Rnor_6.01153,158,389 - 53,158,509NCBIRnor6.0
Rnor_5.01156,327,087 - 56,327,207UniSTSRnor5.0
RGSC_v3.41151,728,964 - 51,729,084UniSTSRGSC3.4
Celera1150,197,401 - 50,197,521UniSTS
Cytogenetic Map11q21UniSTS
STS-N31990  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01153,229,073 - 53,229,326NCBIRnor6.0
Rnor_5.01156,397,771 - 56,398,024UniSTSRnor5.0
RGSC_v3.41151,799,648 - 51,799,901UniSTSRGSC3.4
Celera1150,268,083 - 50,268,340UniSTS
Cytogenetic Map11q21UniSTS
BE114078  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,592,507 - 50,592,657 (+)MAPPER
Rnor_6.01153,197,814 - 53,197,963NCBIRnor6.0
Rnor_6.01152,127,793 - 52,127,942NCBIRnor6.0
Rnor_5.01155,298,343 - 55,298,492UniSTSRnor5.0
Rnor_5.01156,366,512 - 56,366,661UniSTSRnor5.0
RGSC_v3.41151,768,389 - 51,768,538UniSTSRGSC3.4
Celera1150,236,826 - 50,236,975UniSTS
Cytogenetic Map11q21UniSTS
BBX  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,623,206 - 50,623,296 (+)MAPPER
Rnor_6.01153,228,512 - 53,228,601NCBIRnor6.0
Rnor_5.01156,397,210 - 56,397,299UniSTSRnor5.0
RGSC_v3.41151,799,087 - 51,799,176UniSTSRGSC3.4
Celera1150,267,522 - 50,267,611UniSTS
Cytogenetic Map11q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11172720192Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)1132503169342559Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11935127454351274Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111901627290463843Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111947517979734728Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)112194422966944229Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)112194422966944229Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112540112970401129Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112572003870720038Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112572003870720038Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112572003870720038Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112572003870720038Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112831466586994795Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113043533963186373Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)113043533986714631Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113215552082443118Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113590063480900634Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114309033886714631Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)114444434769649708Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114658320986714631Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114726402386994547Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114726402386994547Rat
4889859Pur28Proteinuria QTL 2819.50.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114790104978471527Rat


Genetic Models
This gene Bbx is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:57
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000002700
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25 20 4 19 4 2 2 42 31 41 11 2
Low 3 18 37 37 37 6 9 32 4 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001079938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC129113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002700   ⟹   ENSRNOP00000002700
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1153,081,025 - 53,228,556 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083438   ⟹   ENSRNOP00000070428
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1153,140,599 - 53,228,716 (+)Ensembl
RefSeq Acc Id: NM_001079938   ⟹   NP_001073407
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,480,613 - 50,623,252 (+)NCBI
Rnor_6.01153,081,025 - 53,228,557 (+)NCBI
Rnor_5.01156,153,038 - 56,397,255 (+)NCBI
RGSC_v3.41151,655,446 - 51,799,132 (+)RGD
Celera1150,128,289 - 50,267,567 (+)RGD
Sequence:
RefSeq Acc Id: XM_008768634   ⟹   XP_008766856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768635   ⟹   XP_008766857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768636   ⟹   XP_008766858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768637   ⟹   XP_008766859
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768638   ⟹   XP_008766860
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768639   ⟹   XP_008766861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768640   ⟹   XP_008766862
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768641   ⟹   XP_008766863
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598001   ⟹   XP_017453490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,379 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598002   ⟹   XP_017453491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,382,314 - 50,628,934 (+)NCBI
Rnor_6.01152,984,508 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598003   ⟹   XP_017453492
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,383,812 - 50,628,934 (+)NCBI
Rnor_6.01152,984,906 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598004   ⟹   XP_017453493
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,892 - 50,628,934 (+)NCBI
Rnor_6.01152,983,888 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598005   ⟹   XP_017453494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,383,769 - 50,628,934 (+)NCBI
Rnor_6.01152,984,906 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598006   ⟹   XP_017453495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598007   ⟹   XP_017453496
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,452,053 - 50,628,934 (+)NCBI
Rnor_6.01153,052,039 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598008   ⟹   XP_017453497
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598009   ⟹   XP_017453498
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,451,974 - 50,628,934 (+)NCBI
Rnor_6.01153,052,039 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598010   ⟹   XP_017453499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01153,110,639 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088362   ⟹   XP_038944290
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,480,613 - 50,628,934 (+)NCBI
RefSeq Acc Id: XM_039088363   ⟹   XP_038944291
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,480,613 - 50,628,934 (+)NCBI
RefSeq Acc Id: XM_039088364   ⟹   XP_038944292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,480,613 - 50,628,934 (+)NCBI
RefSeq Acc Id: XM_039088365   ⟹   XP_038944293
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
RefSeq Acc Id: XM_039088366   ⟹   XP_038944294
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
RefSeq Acc Id: XM_039088367   ⟹   XP_038944295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001073407   ⟸   NM_001079938
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766858   ⟸   XM_008768636
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008766857   ⟸   XM_008768635
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008766859   ⟸   XM_008768637
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766856   ⟸   XM_008768634
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766860   ⟸   XM_008768638
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766863   ⟸   XM_008768641
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008766862   ⟸   XM_008768640
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008766861   ⟸   XM_008768639
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453490   ⟸   XM_017598001
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453495   ⟸   XM_017598006
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453497   ⟸   XM_017598008
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453493   ⟸   XM_017598004
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453491   ⟸   XM_017598002
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453492   ⟸   XM_017598003
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453494   ⟸   XM_017598005
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453498   ⟸   XM_017598009
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453496   ⟸   XM_017598007
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453499   ⟸   XM_017598010
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000002700   ⟸   ENSRNOT00000002700
RefSeq Acc Id: ENSRNOP00000070428   ⟸   ENSRNOT00000083438
RefSeq Acc Id: XP_038944294   ⟸   XM_039088366
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944293   ⟸   XM_039088365
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944295   ⟸   XM_039088367
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944291   ⟸   XM_039088363
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944292   ⟸   XM_039088364
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944290   ⟸   XM_039088362
- Peptide Label: isoform X1
Protein Domains
HMG box

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698120
Promoter ID:EPDNEW_R8645
Type:initiation region
Name:Bbx_1
Description:BBX, HMG-box containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01153,081,054 - 53,081,114EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309769 AgrOrtholog
Ensembl Genes ENSRNOG00000001971 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002700 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070428 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002700 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000083438 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112122 IMAGE-MGC_LOAD
InterPro HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_superfamily UniProtKB/TrEMBL
  TF_HMG_box_BBX_DUF2028 UniProtKB/TrEMBL
KEGG Report rno:303970 UniProtKB/TrEMBL
MGC_CLONE MGC:156752 IMAGE-MGC_LOAD
NCBI Gene 303970 ENTREZGENE
Pfam DUF2028 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PhenoGen Bbx PhenoGen
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP HMG-box UniProtKB/TrEMBL
Transposagen Bbx Transposagen
UniProt A0A0G2JXW5 ENTREZGENE, UniProtKB/TrEMBL
  A1L1L0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Bbx  BBX high mobility group box domain containing  LOC100912484  HMG box transcription factor BBX-like  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100912484  HMG box transcription factor BBX-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Bbx  bobby sox homolog (Drosophila)   Bbx_predicted  bobby sox homolog (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bbx_predicted  bobby sox homolog (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED