Bbx (BBX high mobility group box domain containing) - Rat Genome Database

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Gene: Bbx (BBX high mobility group box domain containing) Rattus norvegicus
Analyze
Symbol: Bbx
Name: BBX high mobility group box domain containing
RGD ID: 1309769
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within bone development. Predicted to be active in nucleus. Orthologous to human BBX (BBX high mobility group box domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BBX, HMG-box containing; bobby sox homolog; HMG box transcription factor BBX; HMG box transcription factor BBX-like; LOC100912484; LOC303970
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: BbxTn(sb-T2/Bart3)2.291Mcwi  
Genetic Models: F344-BbxTn(sb-T2/Bart3)2.291Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,850,034 - 64,097,700 (+)NCBIGRCr8
mRatBN7.21150,381,249 - 50,628,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,381,247 - 50,623,251 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1159,249,540 - 59,392,174 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01151,911,234 - 52,053,882 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01151,035,362 - 51,177,756 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01152,983,286 - 53,228,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1153,081,025 - 53,228,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01156,153,038 - 56,397,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41151,655,446 - 51,799,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11151,765,817 - 51,857,084 (+)NCBI
Celera1150,128,289 - 50,267,567 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxynon-2-enal  (ISO)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
folic acid  (ISO)
FR900359  (ISO)
geraniol  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
levonorgestrel  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
N(4)-hydroxycytidine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
testosterone enanthate  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:22876197   PMID:27465138  


Genomics

Comparative Map Data
Bbx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,850,034 - 64,097,700 (+)NCBIGRCr8
mRatBN7.21150,381,249 - 50,628,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,381,247 - 50,623,251 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1159,249,540 - 59,392,174 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01151,911,234 - 52,053,882 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01151,035,362 - 51,177,756 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01152,983,286 - 53,228,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1153,081,025 - 53,228,716 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01156,153,038 - 56,397,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41151,655,446 - 51,799,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11151,765,817 - 51,857,084 (+)NCBI
Celera1150,128,289 - 50,267,567 (+)NCBICelera
Cytogenetic Map11q21NCBI
BBX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383107,522,962 - 107,811,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3107,522,936 - 107,811,339 (+)EnsemblGRCh38hg38GRCh38
GRCh373107,241,809 - 107,530,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363108,724,480 - 109,007,399 (+)NCBINCBI36Build 36hg18NCBI36
Build 343108,724,479 - 109,007,395NCBI
Celera3105,638,147 - 105,926,340 (+)NCBICelera
Cytogenetic Map3q13.12NCBI
HuRef3104,615,349 - 104,903,664 (+)NCBIHuRef
CHM1_13107,206,091 - 107,494,354 (+)NCBICHM1_1
T2T-CHM13v2.03110,242,748 - 110,531,095 (+)NCBIT2T-CHM13v2.0
Bbx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391650,012,207 - 50,252,829 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1650,012,207 - 50,252,753 (-)EnsemblGRCm39 Ensembl
GRCm381650,191,844 - 50,432,466 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1650,191,844 - 50,432,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv371650,191,957 - 50,432,502 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361650,116,507 - 50,351,729 (-)NCBIMGSCv36mm8
Celera1650,536,366 - 50,776,574 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1631.35NCBI
Bbx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554278,339,092 - 8,470,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554278,221,339 - 8,476,405 (+)NCBIChiLan1.0ChiLan1.0
BBX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22105,506,293 - 105,794,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13105,511,071 - 105,799,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03104,655,522 - 104,943,193 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13111,590,259 - 111,878,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3111,728,655 - 111,872,357 (+)Ensemblpanpan1.1panPan2
BBX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13312,833,030 - 13,101,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3312,833,053 - 13,101,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3312,938,918 - 13,207,222 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03312,998,286 - 13,266,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3312,998,286 - 13,266,642 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13312,868,445 - 13,139,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03312,935,044 - 13,205,312 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03313,346,521 - 13,615,301 (+)NCBIUU_Cfam_GSD_1.0
Bbx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602141,693,408 - 141,961,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366451,056,658 - 1,147,385 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936645883,650 - 1,152,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13151,722,098 - 152,005,045 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113151,718,376 - 152,005,091 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213160,753,551 - 160,875,287 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BBX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,982,582 - 73,259,591 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2272,988,468 - 73,092,151 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604193,226,649 - 93,500,833 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bbx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473141,795,134 - 41,886,074 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473141,789,470 - 42,054,333 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bbx
692 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:57
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000002700
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat

Markers in Region
D11Got107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,515,470 - 50,515,730 (+)MAPPERmRatBN7.2
Rnor_6.01153,115,853 - 53,116,112NCBIRnor6.0
Rnor_5.01156,285,588 - 56,285,847UniSTSRnor5.0
RGSC_v3.41151,690,303 - 51,690,562UniSTSRGSC3.4
Celera1150,163,240 - 50,163,472UniSTS
Cytogenetic Map11q21UniSTS
D11Got130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,517,717 - 50,517,895 (+)MAPPERmRatBN7.2
Rnor_6.01153,118,100 - 53,118,277NCBIRnor6.0
Rnor_5.01156,287,835 - 56,288,012UniSTSRnor5.0
RGSC_v3.41151,692,550 - 51,692,727UniSTSRGSC3.4
Celera1150,165,460 - 50,165,638UniSTS
Cytogenetic Map11q21UniSTS
D11Got106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,515,478 - 50,515,778 (+)MAPPERmRatBN7.2
Rnor_6.01153,115,861 - 53,116,160NCBIRnor6.0
Rnor_5.01156,285,596 - 56,285,895UniSTSRnor5.0
RGSC_v3.41151,690,311 - 51,690,610UniSTSRGSC3.4
Celera1150,163,248 - 50,163,520UniSTS
Cytogenetic Map11q21UniSTS
RH138485  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,553,082 - 50,553,203 (+)MAPPERmRatBN7.2
Rnor_6.01153,158,389 - 53,158,509NCBIRnor6.0
Rnor_5.01156,327,087 - 56,327,207UniSTSRnor5.0
RGSC_v3.41151,728,964 - 51,729,084UniSTSRGSC3.4
Celera1150,197,401 - 50,197,521UniSTS
Cytogenetic Map11q21UniSTS
STS-N31990  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01153,229,073 - 53,229,326NCBIRnor6.0
Rnor_5.01156,397,771 - 56,398,024UniSTSRnor5.0
RGSC_v3.41151,799,648 - 51,799,901UniSTSRGSC3.4
Celera1150,268,083 - 50,268,340UniSTS
Cytogenetic Map11q21UniSTS
BE114078  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,592,507 - 50,592,657 (+)MAPPERmRatBN7.2
Rnor_6.01153,197,814 - 53,197,963NCBIRnor6.0
Rnor_6.01152,127,793 - 52,127,942NCBIRnor6.0
Rnor_5.01155,298,343 - 55,298,492UniSTSRnor5.0
Rnor_5.01156,366,512 - 56,366,661UniSTSRnor5.0
RGSC_v3.41151,768,389 - 51,768,538UniSTSRGSC3.4
Celera1150,236,826 - 50,236,975UniSTS
Cytogenetic Map11q21UniSTS
BBX  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,623,206 - 50,623,296 (+)MAPPERmRatBN7.2
Rnor_6.01153,228,512 - 53,228,601NCBIRnor6.0
Rnor_5.01156,397,210 - 56,397,299UniSTSRnor5.0
RGSC_v3.41151,799,087 - 51,799,176UniSTSRGSC3.4
Celera1150,267,522 - 50,267,611UniSTS
Cytogenetic Map11q21UniSTS


Genetic Models
This gene Bbx is modified in the following models/strains:


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25 20 4 19 4 2 2 42 31 41 11 2
Low 3 18 37 37 37 6 9 32 4 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001079938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC129113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000002700   ⟹   ENSRNOP00000002700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,480,613 - 50,623,251 (+)Ensembl
Rnor_6.0 Ensembl1153,081,025 - 53,228,556 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083438   ⟹   ENSRNOP00000070428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,480,613 - 50,623,251 (+)Ensembl
Rnor_6.0 Ensembl1153,140,599 - 53,228,716 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103253   ⟹   ENSRNOP00000086952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,534,100 - 50,623,244 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119802   ⟹   ENSRNOP00000089981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,381,247 - 50,623,244 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119965   ⟹   ENSRNOP00000080973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,381,247 - 50,623,244 (+)Ensembl
RefSeq Acc Id: NM_001079938   ⟹   NP_001073407
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,380 - 64,092,017 (+)NCBI
mRatBN7.21150,480,613 - 50,623,252 (+)NCBI
Rnor_6.01153,081,025 - 53,228,557 (+)NCBI
Rnor_5.01156,153,038 - 56,397,255 (+)NCBI
RGSC_v3.41151,655,446 - 51,799,132 (+)RGD
Celera1150,128,289 - 50,267,567 (+)RGD
Sequence:
RefSeq Acc Id: XM_008768634   ⟹   XP_008766856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768637   ⟹   XP_008766859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768638   ⟹   XP_008766860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768640   ⟹   XP_008766862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768641   ⟹   XP_008766863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598001   ⟹   XP_017453490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,162 - 64,097,700 (+)NCBI
mRatBN7.21150,381,379 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598002   ⟹   XP_017453491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,851,051 - 64,097,700 (+)NCBI
mRatBN7.21150,382,314 - 50,628,934 (+)NCBI
Rnor_6.01152,984,508 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598003   ⟹   XP_017453492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,852,465 - 64,097,700 (+)NCBI
mRatBN7.21150,383,812 - 50,628,934 (+)NCBI
Rnor_6.01152,984,906 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598004   ⟹   XP_017453493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,568 - 64,097,700 (+)NCBI
mRatBN7.21150,381,892 - 50,628,934 (+)NCBI
Rnor_6.01152,983,888 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598005   ⟹   XP_017453494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,852,512 - 64,097,700 (+)NCBI
mRatBN7.21150,383,769 - 50,628,934 (+)NCBI
Rnor_6.01152,984,906 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598007   ⟹   XP_017453496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,920,514 - 64,097,700 (+)NCBI
mRatBN7.21150,452,053 - 50,628,934 (+)NCBI
Rnor_6.01153,052,039 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598008   ⟹   XP_017453497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
Rnor_6.01152,983,286 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598009   ⟹   XP_017453498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,920,747 - 64,097,700 (+)NCBI
mRatBN7.21150,451,974 - 50,628,934 (+)NCBI
Rnor_6.01153,052,039 - 53,228,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088363   ⟹   XP_038944291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,480,613 - 50,628,934 (+)NCBI
RefSeq Acc Id: XM_039088364   ⟹   XP_038944292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,359 - 64,097,700 (+)NCBI
mRatBN7.21150,480,613 - 50,628,934 (+)NCBI
RefSeq Acc Id: XM_039088365   ⟹   XP_038944293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
RefSeq Acc Id: XM_039088366   ⟹   XP_038944294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
mRatBN7.21150,381,249 - 50,628,932 (+)NCBI
RefSeq Acc Id: XM_063270534   ⟹   XP_063126604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,851,981 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270535   ⟹   XP_063126605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,162 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270536   ⟹   XP_063126606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,162 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270537   ⟹   XP_063126607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,162 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270538   ⟹   XP_063126608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,851,079 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270539   ⟹   XP_063126609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,568 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270540   ⟹   XP_063126610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,380 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270541   ⟹   XP_063126611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270542   ⟹   XP_063126612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,365 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270543   ⟹   XP_063126613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,851,051 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270544   ⟹   XP_063126614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270545   ⟹   XP_063126615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270546   ⟹   XP_063126616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,380 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270547   ⟹   XP_063126617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,380 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270548   ⟹   XP_063126618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,359 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270549   ⟹   XP_063126619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,162 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270550   ⟹   XP_063126620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,568 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270551   ⟹   XP_063126621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,851,067 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270552   ⟹   XP_063126622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270553   ⟹   XP_063126623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,162 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270554   ⟹   XP_063126624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,852,526 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270555   ⟹   XP_063126625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,949,380 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270556   ⟹   XP_063126626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,851,969 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270557   ⟹   XP_063126627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
RefSeq Acc Id: XM_063270558   ⟹   XP_063126628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81163,850,034 - 64,097,700 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001073407 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766856 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766859 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766860 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766862 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766863 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453490 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453491 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453492 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453493 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453494 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453496 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453497 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453498 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944291 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944292 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944293 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944294 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126604 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126605 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126611 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126621 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126623 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126624 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126626 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126627 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126628 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI29114 (Get FASTA)   NCBI Sequence Viewer  
  EDM11088 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002700
  ENSRNOP00000002700.4
  ENSRNOP00000070428
  ENSRNOP00000070428.2
  ENSRNOP00000080973.1
  ENSRNOP00000086952.1
  ENSRNOP00000089981
  ENSRNOP00000089981.1
RefSeq Acc Id: NP_001073407   ⟸   NM_001079938
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL),   A6IQT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766859   ⟸   XM_008768637
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766856   ⟸   XM_008768634
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766860   ⟸   XM_008768638
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL),   A6IQT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766863   ⟸   XM_008768641
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JXW5 (UniProtKB/TrEMBL),   A6IQT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766862   ⟸   XM_008768640
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453490   ⟸   XM_017598001
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453497   ⟸   XM_017598008
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453493   ⟸   XM_017598004
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453491   ⟸   XM_017598002
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453492   ⟸   XM_017598003
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453494   ⟸   XM_017598005
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453498   ⟸   XM_017598009
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453496   ⟸   XM_017598007
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000002700   ⟸   ENSRNOT00000002700
RefSeq Acc Id: ENSRNOP00000070428   ⟸   ENSRNOT00000083438
RefSeq Acc Id: XP_038944294   ⟸   XM_039088366
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944293   ⟸   XM_039088365
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944291   ⟸   XM_039088363
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944292   ⟸   XM_039088364
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL),   A0A8I5ZRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089981   ⟸   ENSRNOT00000119802
RefSeq Acc Id: ENSRNOP00000080973   ⟸   ENSRNOT00000119965
RefSeq Acc Id: ENSRNOP00000086952   ⟸   ENSRNOT00000103253
RefSeq Acc Id: XP_063126615   ⟸   XM_063270545
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126611   ⟸   XM_063270541
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126614   ⟸   XM_063270544
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126627   ⟸   XM_063270557
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063126622   ⟸   XM_063270552
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126628   ⟸   XM_063270558
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063126605   ⟸   XM_063270535
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126606   ⟸   XM_063270536
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126623   ⟸   XM_063270553
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126607   ⟸   XM_063270537
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126619   ⟸   XM_063270549
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126609   ⟸   XM_063270539
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126620   ⟸   XM_063270550
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126613   ⟸   XM_063270543
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126621   ⟸   XM_063270551
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126608   ⟸   XM_063270538
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126626   ⟸   XM_063270556
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126604   ⟸   XM_063270534
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126624   ⟸   XM_063270554
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126618   ⟸   XM_063270548
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126612   ⟸   XM_063270542
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126610   ⟸   XM_063270540
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ADK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126617   ⟸   XM_063270547
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126616   ⟸   XM_063270546
- Peptide Label: isoform X3
- UniProtKB: A1L1L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126625   ⟸   XM_063270555
- Peptide Label: isoform X4
Protein Domains
DUF2028   HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXW5-F1-model_v2 AlphaFold A0A0G2JXW5 1-938 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698120
Promoter ID:EPDNEW_R8645
Type:initiation region
Name:Bbx_1
Description:BBX, HMG-box containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01153,081,054 - 53,081,114EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309769 AgrOrtholog
BioCyc Gene G2FUF-21439 BioCyc
Ensembl Genes ENSRNOG00000001971 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002700 ENTREZGENE
  ENSRNOT00000002700.7 UniProtKB/TrEMBL
  ENSRNOT00000083438.2 UniProtKB/TrEMBL
  ENSRNOT00000103253.1 UniProtKB/TrEMBL
  ENSRNOT00000119802.1 UniProtKB/TrEMBL
  ENSRNOT00000119965.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112122 IMAGE-MGC_LOAD
InterPro BBX_HMG-box UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_superfamily UniProtKB/TrEMBL
  TF_HMG_box_BBX_DUF2028 UniProtKB/TrEMBL
KEGG Report rno:303970 UniProtKB/TrEMBL
MGC_CLONE MGC:156752 IMAGE-MGC_LOAD
NCBI Gene 303970 ENTREZGENE
PANTHER HMG BOX TRANSCRIPTION FACTOR BBX UniProtKB/TrEMBL
  HMG-BOX TRANSCRIPTION FACTOR BBX UniProtKB/TrEMBL
Pfam DUF2028 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PhenoGen Bbx PhenoGen
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001971 RatGTEx
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP HMG-box UniProtKB/TrEMBL
UniProt A0A0G2JXW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2A9_RAT UniProtKB/TrEMBL
  A0A8I6ADK4 ENTREZGENE, UniProtKB/TrEMBL
  A1L1L0 ENTREZGENE, UniProtKB/TrEMBL
  A6IQT5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Bbx  BBX high mobility group box domain containing  LOC100912484  HMG box transcription factor BBX-like  Data merged from RGD:6486597 737654 PROVISIONAL
2012-07-05 LOC100912484  HMG box transcription factor BBX-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Bbx  bobby sox homolog (Drosophila)   Bbx_predicted  bobby sox homolog (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bbx_predicted  bobby sox homolog (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED