Zcchc14 (zinc finger CCHC-type containing 14) - Rat Genome Database
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Gene: Zcchc14 (zinc finger CCHC-type containing 14) Rattus norvegicus
Analyze
Symbol: Zcchc14
Name: zinc finger CCHC-type containing 14
RGD ID: 1309494
Description: Predicted to have nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Orthologous to human ZCCHC14 (zinc finger CCHC-type containing 14); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC365018; RGD1309494; similar to M-BDG29; zinc finger CCHC domain-containing protein 14; zinc finger, CCHC domain containing 14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21949,674,185 - 49,718,004 (-)NCBI
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01953,644,500 - 53,688,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01964,381,938 - 64,426,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,858,907 - 51,899,663 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11951,863,747 - 51,904,544 (-)NCBI
Celera1948,921,002 - 48,964,690 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Zcchc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21949,674,185 - 49,718,004 (-)NCBI
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01953,644,500 - 53,688,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01964,381,938 - 64,426,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,858,907 - 51,899,663 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11951,863,747 - 51,904,544 (-)NCBI
Celera1948,921,002 - 48,964,690 (-)NCBICelera
Cytogenetic Map19q12NCBI
ZCCHC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1687,406,246 - 87,493,024 (-)EnsemblGRCh38hg38GRCh38
GRCh381687,406,248 - 87,493,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371687,439,854 - 87,526,630 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371687,439,852 - 87,525,870 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,997,353 - 86,082,961 (-)NCBINCBI36hg18NCBI36
Build 341685,997,363 - 86,082,966NCBI
Celera1671,736,619 - 71,822,230 (-)NCBI
Cytogenetic Map16q24.2NCBI
HuRef1673,182,266 - 73,267,848 (-)NCBIHuRef
CHM1_11688,851,639 - 88,937,191 (-)NCBICHM1_1
Zcchc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,325,434 - 122,379,662 (-)NCBIGRCm39mm39
GRCm388121,598,697 - 121,652,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,598,703 - 121,652,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,122,603 - 124,175,833 (-)NCBIGRCm37mm9NCBIm37
MGSCv368124,485,528 - 124,538,023 (-)NCBImm8
Celera8125,820,046 - 125,873,474 (-)NCBICelera
Cytogenetic Map8E1NCBI
Zcchc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555411,872,624 - 1,909,779 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555411,872,624 - 1,909,723 (-)NCBIChiLan1.0ChiLan1.0
ZCCHC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11687,401,184 - 87,486,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1687,401,184 - 87,486,124 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01668,078,237 - 68,165,406 (-)NCBIMhudiblu_PPA_v0panPan3
ZCCHC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1565,611,032 - 65,667,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Zcchc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366411,728,596 - 1,783,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,849,979 - 1,918,719 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,849,974 - 1,917,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,937,818 - 2,005,535 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC14
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,776,249 - 72,863,957 (-)NCBI
ChlSab1.1 Ensembl572,780,300 - 72,863,860 (-)Ensembl
Zcchc14
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247463,096,644 - 3,138,825 (-)NCBI

Position Markers
BF393292  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01954,541,965 - 54,542,080NCBIRnor6.0
Rnor_5.01965,257,497 - 65,257,612UniSTSRnor5.0
RGSC_v3.41951,964,744 - 51,964,859UniSTSRGSC3.4
Celera1949,029,216 - 49,029,331UniSTS
RH 3.4 Map19682.8UniSTS
Cytogenetic Map19q12UniSTS
RH137961  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01954,544,842 - 54,545,080NCBIRnor6.0
Rnor_5.01965,260,374 - 65,260,612UniSTSRnor5.0
RGSC_v3.41951,967,621 - 51,967,859UniSTSRGSC3.4
Celera1949,032,093 - 49,032,331UniSTS
RH 3.4 Map19682.8UniSTS
Cytogenetic Map19q12UniSTS
RH140237  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01953,646,289 - 53,646,472NCBIRnor6.0
Rnor_6.0270,037,784 - 70,037,967NCBIRnor6.0
Rnor_5.0289,761,299 - 89,761,482UniSTSRnor5.0
Rnor_5.01964,383,724 - 64,383,907UniSTSRnor5.0
RGSC_v3.41951,857,182 - 51,857,365UniSTSRGSC3.4
RGSC_v3.4270,110,996 - 70,111,179UniSTSRGSC3.4
Celera1948,922,792 - 48,922,975UniSTS
Celera265,106,837 - 65,107,020UniSTS
RH 3.4 Map19696.5UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193791679960220451Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193791679960220451Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194883071260220581Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:92
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000058486, ENSRNOT00000074448
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 27 9 4 3 4 73 35 39 11
Low 2 16 48 37 16 37 8 11 1 2 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000074448   ⟹   ENSRNOP00000064290
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)Ensembl
RefSeq Acc Id: XM_001079169   ⟹   XP_001079169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1948,921,002 - 48,964,690 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006222783   ⟹   XP_006222845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1948,921,002 - 48,964,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006255732   ⟹   XP_006255794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21949,674,185 - 49,718,004 (-)NCBI
Rnor_6.01953,644,500 - 53,688,624 (-)NCBI
Rnor_5.01964,381,938 - 64,426,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098193   ⟹   XP_038954121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21949,674,185 - 49,718,004 (-)NCBI
RefSeq Acc Id: XM_344780   ⟹   XP_344781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21949,674,185 - 49,718,003 (-)NCBI
Rnor_6.01953,644,503 - 53,688,624 (-)NCBI
Rnor_5.01964,381,938 - 64,426,070 (-)NCBI
RGSC_v3.41951,858,907 - 51,899,663 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_006255794 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954121 (Get FASTA)   NCBI Sequence Viewer  
  XP_344781 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92728 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001079169   ⟸   XM_001079169
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_344781   ⟸   XM_344780
- Peptide Label: isoform X1
- UniProtKB: M0R4K3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006222845   ⟸   XM_006222783
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006255794   ⟸   XM_006255732
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000064290   ⟸   ENSRNOT00000074448
RefSeq Acc Id: XP_038954121   ⟸   XM_039098193
- Peptide Label: isoform X3
Protein Domains
CCHC-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309494 AgrOrtholog
Ensembl Genes ENSRNOG00000018226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064290 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074448 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro PX_dom_sf UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  ZCCH14_SAM UniProtKB/TrEMBL
  ZCCHC14 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene 365018 ENTREZGENE
PANTHER PTHR16195 UniProtKB/TrEMBL
Pfam zf-CCHC UniProtKB/TrEMBL
PhenoGen Zcchc14 PhenoGen
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
UniProt M0R4K3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zcchc14  zinc finger CCHC-type containing 14  Zcchc14  zinc finger, CCHC domain containing 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zcchc14  zinc finger, CCHC domain containing 14   Zcchc14_predicted  zinc finger, CCHC domain containing 14 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Zcchc14_predicted  zinc finger, CCHC domain containing 14 (predicted)  RGD1309494_predicted  similar to M-BDG29 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1309494_predicted  similar to M-BDG29 (predicted)  LOC365018_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365018_predicted  similar to M-BDG29 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL