Zcchc14 (zinc finger CCHC-type containing 14) - Rat Genome Database

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Gene: Zcchc14 (zinc finger CCHC-type containing 14) Rattus norvegicus
Analyze
Symbol: Zcchc14
Name: zinc finger CCHC-type containing 14
RGD ID: 1309494
Description: Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Orthologous to human ZCCHC14 (zinc finger CCHC-type containing 14); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC365018; RGD1309494; similar to M-BDG29; zinc finger CCHC domain-containing protein 14; zinc finger, CCHC domain containing 14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,582,800 - 66,627,136 (-)NCBIGRCr8
mRatBN7.21949,674,185 - 49,718,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,674,195 - 49,718,029 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,644,500 - 53,688,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,381,938 - 64,426,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,858,907 - 51,899,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11951,863,747 - 51,904,544 (-)NCBI
Celera1948,921,002 - 48,964,690 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zcchc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,582,800 - 66,627,136 (-)NCBIGRCr8
mRatBN7.21949,674,185 - 49,718,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,674,195 - 49,718,029 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,644,500 - 53,688,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,381,938 - 64,426,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,858,907 - 51,899,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11951,863,747 - 51,904,544 (-)NCBI
Celera1948,921,002 - 48,964,690 (-)NCBICelera
Cytogenetic Map19q12NCBI
ZCCHC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,406,248 - 87,493,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,406,246 - 87,493,024 (-)EnsemblGRCh38hg38GRCh38
GRCh371687,439,854 - 87,526,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,997,353 - 86,082,961 (-)NCBINCBI36Build 36hg18NCBI36
Build 341685,997,363 - 86,082,966NCBI
Celera1671,736,619 - 71,822,230 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,182,266 - 73,267,848 (-)NCBIHuRef
CHM1_11688,851,639 - 88,937,191 (-)NCBICHM1_1
T2T-CHM13v2.01693,477,129 - 93,563,941 (-)NCBIT2T-CHM13v2.0
Zcchc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,325,442 - 122,379,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,325,442 - 122,379,640 (-)EnsemblGRCm39 Ensembl
GRCm388121,598,697 - 121,652,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,598,703 - 121,652,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,122,603 - 124,175,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368124,485,528 - 124,538,023 (-)NCBIMGSCv36mm8
Celera8125,820,046 - 125,873,474 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.67NCBI
Zcchc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555411,872,624 - 1,909,779 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555411,872,624 - 1,909,723 (-)NCBIChiLan1.0ChiLan1.0
ZCCHC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,165,154 - 97,251,845 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,079,289 - 103,168,696 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,078,237 - 68,165,406 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,401,184 - 87,486,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1687,401,184 - 87,486,124 (-)Ensemblpanpan1.1panPan2
ZCCHC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,611,032 - 65,667,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,622,560 - 65,679,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,832,428 - 65,889,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,830,308 - 65,887,136 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,857,317 - 65,914,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,689,172 - 65,746,484 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,103,133 - 66,160,629 (+)NCBIUU_Cfam_GSD_1.0
Zcchc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,975,048 - 26,030,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,728,592 - 1,781,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,728,596 - 1,783,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,850,051 - 1,918,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,849,974 - 1,917,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,937,818 - 2,005,535 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,776,249 - 72,863,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl572,780,300 - 72,863,860 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,832,207 - 2,920,201 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,097,565 - 3,138,799 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,096,644 - 3,138,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zcchc14
111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:92
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000058486, ENSRNOT00000074448
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat

Markers in Region
BF393292  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21949,782,583 - 49,782,699 (+)MAPPERmRatBN7.2
Rnor_6.01954,541,965 - 54,542,080NCBIRnor6.0
Rnor_5.01965,257,497 - 65,257,612UniSTSRnor5.0
RGSC_v3.41951,964,744 - 51,964,859UniSTSRGSC3.4
Celera1949,029,216 - 49,029,331UniSTS
RH 3.4 Map19682.8UniSTS
Cytogenetic Map19q12UniSTS
RH137961  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21949,785,460 - 49,785,699 (+)MAPPERmRatBN7.2
Rnor_6.01954,544,842 - 54,545,080NCBIRnor6.0
Rnor_5.01965,260,374 - 65,260,612UniSTSRnor5.0
RGSC_v3.41951,967,621 - 51,967,859UniSTSRGSC3.4
Celera1949,032,093 - 49,032,331UniSTS
RH 3.4 Map19682.8UniSTS
Cytogenetic Map19q12UniSTS
RH140237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21949,675,973 - 49,676,157 (+)MAPPERmRatBN7.2
mRatBN7.2269,249,793 - 69,249,977 (+)MAPPERmRatBN7.2
Rnor_6.0270,037,784 - 70,037,967NCBIRnor6.0
Rnor_6.01953,646,289 - 53,646,472NCBIRnor6.0
Rnor_5.01964,383,724 - 64,383,907UniSTSRnor5.0
Rnor_5.0289,761,299 - 89,761,482UniSTSRnor5.0
RGSC_v3.4270,110,996 - 70,111,179UniSTSRGSC3.4
RGSC_v3.41951,857,182 - 51,857,365UniSTSRGSC3.4
Celera1948,922,792 - 48,922,975UniSTS
Celera265,106,837 - 65,107,020UniSTS
RH 3.4 Map19696.5UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 27 9 4 3 4 73 35 39 11
Low 2 16 48 37 16 37 8 11 1 2 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000074448   ⟹   ENSRNOP00000064290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1949,674,195 - 49,718,029 (-)Ensembl
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)Ensembl
RefSeq Acc Id: NM_001427306   ⟹   NP_001414235
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,582,800 - 66,627,136 (-)NCBI
RefSeq Acc Id: XM_006255732   ⟹   XP_006255794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,582,800 - 66,626,617 (-)NCBI
mRatBN7.21949,674,185 - 49,718,004 (-)NCBI
Rnor_6.01953,644,500 - 53,688,624 (-)NCBI
Rnor_5.01964,381,938 - 64,426,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098193   ⟹   XP_038954121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,582,800 - 66,626,617 (-)NCBI
mRatBN7.21949,674,185 - 49,718,004 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414235 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255794 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954121 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92728 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064290.2
RefSeq Acc Id: XP_006255794   ⟸   XM_006255732
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000064290   ⟸   ENSRNOT00000074448
RefSeq Acc Id: XP_038954121   ⟸   XM_039098193
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414235   ⟸   NM_001427306
- UniProtKB: M0R4K3 (UniProtKB/TrEMBL)
Protein Domains
CCHC-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4K3-F1-model_v2 AlphaFold M0R4K3 1-1087 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309494 AgrOrtholog
BioCyc Gene G2FUF-5426 BioCyc
Ensembl Genes ENSRNOG00000018226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074448.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro PX_dom_sf UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  ZCCH14_SAM UniProtKB/TrEMBL
  ZCCHC14 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene 365018 ENTREZGENE
PANTHER PTHR16195 UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 14 UniProtKB/TrEMBL
Pfam zf-CCHC UniProtKB/TrEMBL
PhenoGen Zcchc14 PhenoGen
PROSITE ZF_CCHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018226 RatGTEx
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
UniProt M0R4K3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zcchc14  zinc finger CCHC-type containing 14  Zcchc14  zinc finger, CCHC domain containing 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zcchc14  zinc finger, CCHC domain containing 14   Zcchc14_predicted  zinc finger, CCHC domain containing 14 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Zcchc14_predicted  zinc finger, CCHC domain containing 14 (predicted)  RGD1309494_predicted  similar to M-BDG29 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1309494_predicted  similar to M-BDG29 (predicted)  LOC365018_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365018_predicted  similar to M-BDG29 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL