ZCCHC14 (zinc finger CCHC-type containing 14) - Rat Genome Database

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Gene: ZCCHC14 (zinc finger CCHC-type containing 14) Sus scrofa
Analyze
Symbol: ZCCHC14
Name: zinc finger CCHC-type containing 14
RGD ID: 14101416
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); phosphatidylinositol binding (inferred); zinc ion binding (inferred); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); genetic disease (ortholog); KBG syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCHC domain-containing protein 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,850,051 - 1,918,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,849,974 - 1,917,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,937,818 - 2,005,535 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZCCHC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,850,051 - 1,918,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,849,974 - 1,917,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,937,818 - 2,005,535 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,406,248 - 87,493,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,406,246 - 87,493,024 (-)EnsemblGRCh38hg38GRCh38
GRCh371687,439,854 - 87,526,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,997,353 - 86,082,961 (-)NCBINCBI36Build 36hg18NCBI36
Build 341685,997,363 - 86,082,966NCBI
Celera1671,736,619 - 71,822,230 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,182,266 - 73,267,848 (-)NCBIHuRef
CHM1_11688,851,639 - 88,937,191 (-)NCBICHM1_1
T2T-CHM13v2.01693,477,129 - 93,563,941 (-)NCBIT2T-CHM13v2.0
Zcchc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,325,442 - 122,379,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,325,442 - 122,379,640 (-)EnsemblGRCm39 Ensembl
GRCm388121,598,697 - 121,652,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,598,703 - 121,652,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,122,603 - 124,175,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368124,485,528 - 124,538,023 (-)NCBIMGSCv36mm8
Celera8125,820,046 - 125,873,474 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.67NCBI
Zcchc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,582,800 - 66,627,136 (-)NCBIGRCr8
mRatBN7.21949,674,185 - 49,718,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,674,195 - 49,718,029 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,644,500 - 53,688,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,381,938 - 64,426,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,858,907 - 51,899,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11951,863,747 - 51,904,544 (-)NCBI
Celera1948,921,002 - 48,964,690 (-)NCBICelera
Cytogenetic Map19q12NCBI
Zcchc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555411,872,624 - 1,909,779 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555411,872,624 - 1,909,723 (-)NCBIChiLan1.0ChiLan1.0
ZCCHC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,165,154 - 97,251,845 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,079,289 - 103,168,696 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,078,237 - 68,165,406 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,401,184 - 87,486,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1687,401,184 - 87,486,124 (-)Ensemblpanpan1.1panPan2
ZCCHC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,611,032 - 65,667,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,622,560 - 65,679,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,832,428 - 65,889,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,830,308 - 65,887,136 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,857,317 - 65,914,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,689,172 - 65,746,484 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,103,133 - 66,160,629 (+)NCBIUU_Cfam_GSD_1.0
Zcchc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,975,048 - 26,030,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,728,592 - 1,781,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,728,596 - 1,783,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,776,249 - 72,863,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl572,780,300 - 72,863,860 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,832,207 - 2,920,201 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,097,565 - 3,138,799 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,096,644 - 3,138,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZCCHC14
2450 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 3 4 2 22 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002947   ⟹   ENSSSCP00000002868
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl61,849,979 - 1,918,719 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045591   ⟹   ENSSSCP00000052295
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl61,850,051 - 1,918,704 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047488   ⟹   ENSSSCP00000053023
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl61,849,979 - 1,918,719 (+)Ensembl
RefSeq Acc Id: XM_003126814   ⟹   XP_003126862
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.161,849,974 - 1,917,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664297   ⟹   XP_005664354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.161,849,974 - 1,917,601 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003126862   ⟸   XM_003126814
- Peptide Label: isoform X1
- UniProtKB: A0A8D0Z8J0 (UniProtKB/TrEMBL),   A0A480L8S3 (UniProtKB/TrEMBL),   A0A8D1WNG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005664354   ⟸   XM_005664297
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZBA9 (UniProtKB/TrEMBL),   F1S6K0 (UniProtKB/TrEMBL),   A0A8D1WJM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000002868   ⟸   ENSSSCT00000002947
RefSeq Acc Id: ENSSSCP00000052295   ⟸   ENSSSCT00000045591
RefSeq Acc Id: ENSSSCP00000053023   ⟸   ENSSSCT00000047488
Protein Domains
CCHC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002656 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025030696 UniProtKB/TrEMBL
  ENSSSCG00030067102 UniProtKB/TrEMBL
  ENSSSCG00035027079 UniProtKB/TrEMBL
  ENSSSCG00040047365 UniProtKB/TrEMBL
  ENSSSCG00045012317 UniProtKB/TrEMBL
  ENSSSCG00055008820 UniProtKB/TrEMBL
  ENSSSCG00060068580 UniProtKB/TrEMBL
  ENSSSCG00065069837 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045591 ENTREZGENE
  ENSSSCT00000045591.3 UniProtKB/TrEMBL
  ENSSSCT00025041696.1 UniProtKB/TrEMBL
  ENSSSCT00025041842.1 UniProtKB/TrEMBL
  ENSSSCT00030093776.1 UniProtKB/TrEMBL
  ENSSSCT00035035775.1 UniProtKB/TrEMBL
  ENSSSCT00035035791.1 UniProtKB/TrEMBL
  ENSSSCT00040063770.1 UniProtKB/TrEMBL
  ENSSSCT00045020949.1 UniProtKB/TrEMBL
  ENSSSCT00055017213.1 UniProtKB/TrEMBL
  ENSSSCT00060093607.1 UniProtKB/TrEMBL
  ENSSSCT00060093617.1 UniProtKB/TrEMBL
  ENSSSCT00065095888.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro PX_dom_sf UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  ZCCH14_SAM UniProtKB/TrEMBL
  ZCCHC14 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
KEGG Report ssc:100512105 UniProtKB/TrEMBL
NCBI Gene ZCCHC14 ENTREZGENE
PANTHER PTHR16195 UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 14 UniProtKB/TrEMBL
Pfam zf-CCHC UniProtKB/TrEMBL
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A287B7K4_PIG UniProtKB/TrEMBL
  A0A480L8S3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z8J0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZBA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q768_PIG UniProtKB/TrEMBL
  A0A8D1WJM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WNG1 ENTREZGENE, UniProtKB/TrEMBL
  F1S6K0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95107 ENTREZGENE