ZCCHC14 (zinc finger CCHC-type containing 14) - Rat Genome Database

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Gene: ZCCHC14 (zinc finger CCHC-type containing 14) Canis lupus familiaris
Analyze
Symbol: ZCCHC14
Name: zinc finger CCHC-type containing 14
RGD ID: 12308337
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); phosphatidylinositol binding (inferred); zinc ion binding (inferred); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); KBG syndrome (ortholog); persistent fetal circulation syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCHC domain-containing protein 14; zinc finger, CCHC domain containing 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,611,032 - 65,667,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,622,560 - 65,679,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,832,428 - 65,889,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,830,308 - 65,887,136 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,857,317 - 65,914,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,689,172 - 65,746,484 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,103,133 - 66,160,629 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZCCHC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,611,032 - 65,667,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,622,560 - 65,679,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,832,428 - 65,889,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,830,308 - 65,887,136 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,857,317 - 65,914,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,689,172 - 65,746,484 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,103,133 - 66,160,629 (+)NCBIUU_Cfam_GSD_1.0
ZCCHC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,406,248 - 87,493,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,406,246 - 87,493,024 (-)EnsemblGRCh38hg38GRCh38
GRCh371687,439,854 - 87,526,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,997,353 - 86,082,961 (-)NCBINCBI36Build 36hg18NCBI36
Build 341685,997,363 - 86,082,966NCBI
Celera1671,736,619 - 71,822,230 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,182,266 - 73,267,848 (-)NCBIHuRef
CHM1_11688,851,639 - 88,937,191 (-)NCBICHM1_1
T2T-CHM13v2.01693,477,129 - 93,563,941 (-)NCBIT2T-CHM13v2.0
Zcchc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,325,442 - 122,379,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,325,442 - 122,379,640 (-)EnsemblGRCm39 Ensembl
GRCm388121,598,697 - 121,652,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,598,703 - 121,652,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,122,603 - 124,175,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368124,485,528 - 124,538,023 (-)NCBIMGSCv36mm8
Celera8125,820,046 - 125,873,474 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.67NCBI
Zcchc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,582,800 - 66,627,136 (-)NCBIGRCr8
mRatBN7.21949,674,185 - 49,718,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,674,195 - 49,718,029 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,644,500 - 53,688,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,647,815 - 53,688,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,381,938 - 64,426,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,858,907 - 51,899,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11951,863,747 - 51,904,544 (-)NCBI
Celera1948,921,002 - 48,964,690 (-)NCBICelera
Cytogenetic Map19q12NCBI
Zcchc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555411,872,624 - 1,909,779 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555411,872,624 - 1,909,723 (-)NCBIChiLan1.0ChiLan1.0
ZCCHC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,165,154 - 97,251,845 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,079,289 - 103,168,696 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,078,237 - 68,165,406 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,401,184 - 87,486,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1687,401,184 - 87,486,124 (-)Ensemblpanpan1.1panPan2
Zcchc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,975,048 - 26,030,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,728,592 - 1,781,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,728,596 - 1,783,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,850,051 - 1,918,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,849,974 - 1,917,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,937,818 - 2,005,535 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,776,249 - 72,863,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl572,780,300 - 72,863,860 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,832,207 - 2,920,201 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,097,565 - 3,138,799 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,096,644 - 3,138,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZCCHC14
674 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005620586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005620587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038602217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038602218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000031673   ⟹   ENSCAFP00000029487
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000090888   ⟹   ENSCAFP00000043414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl565,611,026 - 65,664,923 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007135   ⟹   ENSCAFP00845005683
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,830,308 - 65,887,119 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007155   ⟹   ENSCAFP00845005698
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,832,457 - 65,887,136 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007178   ⟹   ENSCAFP00845005712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,832,457 - 65,887,119 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007194   ⟹   ENSCAFP00845005725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,871,779 - 65,887,119 (+)Ensembl
RefSeq Acc Id: XM_005620587   ⟹   XP_005620644
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1565,611,032 - 65,667,162 (+)NCBI
Dog10K_Boxer_Tasha565,622,560 - 65,679,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014113954   ⟹   XP_013969429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1565,611,032 - 65,667,162 (+)NCBI
Dog10K_Boxer_Tasha565,622,560 - 65,679,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038476922   ⟹   XP_038332850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1565,857,317 - 65,914,597 (+)NCBI
RefSeq Acc Id: XM_038476923   ⟹   XP_038332851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1565,857,317 - 65,914,597 (+)NCBI
RefSeq Acc Id: XM_038538095   ⟹   XP_038394023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0566,103,133 - 66,160,629 (+)NCBI
RefSeq Acc Id: XM_038602217   ⟹   XP_038458145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0565,689,172 - 65,746,484 (+)NCBI
RefSeq Acc Id: XM_038602218   ⟹   XP_038458146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0565,689,172 - 65,746,484 (+)NCBI
RefSeq Acc Id: XM_038666834   ⟹   XP_038522762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0565,832,428 - 65,889,740 (+)NCBI
RefSeq Acc Id: XM_038666835   ⟹   XP_038522763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0565,832,428 - 65,889,740 (+)NCBI
RefSeq Acc Id: XP_005620644   ⟸   XM_005620587
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YXG7 (UniProtKB/TrEMBL),   A0A8I3RT96 (UniProtKB/TrEMBL),   A0A8C0NYU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013969429   ⟸   XM_014113954
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SIA4 (UniProtKB/TrEMBL),   A0A8C0NYU1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000029487   ⟸   ENSCAFT00000031673
Ensembl Acc Id: ENSCAFP00000043414   ⟸   ENSCAFT00000090888
RefSeq Acc Id: XP_038332850   ⟸   XM_038476922
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038332851   ⟸   XM_038476923
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038458145   ⟸   XM_038602217
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038458146   ⟸   XM_038602218
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038522762   ⟸   XM_038666834
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YXG7 (UniProtKB/TrEMBL),   A0A8I3RT96 (UniProtKB/TrEMBL),   A0A8C0NYU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038522763   ⟸   XM_038666835
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SIA4 (UniProtKB/TrEMBL),   A0A8C0NYU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394023   ⟸   XM_038538095
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NYU1 (UniProtKB/TrEMBL),   A0A8C0YXG7 (UniProtKB/TrEMBL),   A0A8I3RT96 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845005683   ⟸   ENSCAFT00845007135
Ensembl Acc Id: ENSCAFP00845005712   ⟸   ENSCAFT00845007178
Ensembl Acc Id: ENSCAFP00845005698   ⟸   ENSCAFT00845007155
Ensembl Acc Id: ENSCAFP00845005725   ⟸   ENSCAFT00845007194
Protein Domains
CCHC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019907 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018050 UniProtKB/TrEMBL
  ENSCAFG00040013139 UniProtKB/TrEMBL
  ENSCAFG00845003938 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031673.6 UniProtKB/TrEMBL
  ENSCAFT00000090888.2 UniProtKB/TrEMBL
  ENSCAFT00000094836.1 UniProtKB/TrEMBL
  ENSCAFT00000101149.1 UniProtKB/TrEMBL
  ENSCAFT00000107592.1 UniProtKB/TrEMBL
  ENSCAFT00000109989.1 UniProtKB/TrEMBL
  ENSCAFT00030033256.1 UniProtKB/TrEMBL
  ENSCAFT00030033367.1 UniProtKB/TrEMBL
  ENSCAFT00030033476.1 UniProtKB/TrEMBL
  ENSCAFT00040024628.1 UniProtKB/TrEMBL
  ENSCAFT00040024740.1 UniProtKB/TrEMBL
  ENSCAFT00845007135.1 UniProtKB/TrEMBL
  ENSCAFT00845007155 ENTREZGENE
  ENSCAFT00845007155.1 UniProtKB/TrEMBL
  ENSCAFT00845007178 ENTREZGENE
  ENSCAFT00845007178.1 UniProtKB/TrEMBL
  ENSCAFT00845007194.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro PX_dom_sf UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  ZCCH14_SAM UniProtKB/TrEMBL
  ZCCHC14 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene ZCCHC14 ENTREZGENE
PANTHER PTHR16195 UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 14 UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A8C0NSP0_CANLF UniProtKB/TrEMBL
  A0A8C0NYU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SIA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YXG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MT72_CANLF UniProtKB/TrEMBL
  A0A8I3N7E7_CANLF UniProtKB/TrEMBL
  A0A8I3RRT2_CANLF UniProtKB/TrEMBL
  A0A8I3RT96 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PH18_CANLF UniProtKB/TrEMBL
  A0A8P0PJE0_CANLF UniProtKB/TrEMBL
  A0A8P0PPD8_CANLF UniProtKB/TrEMBL
  A0A8P0SPB0_CANLF UniProtKB/TrEMBL
  A0A8P0TU00_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48568 ENTREZGENE