Ccz1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated) - Rat Genome Database

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Gene: Ccz1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated) Rattus norvegicus
Analyze
Symbol: Ccz1 (Ensembl: Ccz1b)
Name: CCZ1 homolog, vacuolar protein trafficking and biogenesis associated (Ensembl:CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated)
RGD ID: 1306410
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to several human genes including CCZ1B (CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated); INTERACTS WITH bisphenol A; caffeine; glyphosate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated; CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B; CCZ1 vacuolar protein trafficking and biogenesis associated; CCZ1 vacuolar protein trafficking and biogenesis associated homolog; CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae); Ccz1b; hypothetical protein LOC360768; LOC360768; RGD1306410; similar to CG14980-PB; vacuolar fusion protein CCZ1 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,714,768 - 15,738,273 (+)NCBIGRCr8
mRatBN7.21210,601,066 - 10,624,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,601,056 - 10,624,608 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,407,504 - 11,431,083 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,030,789 - 12,054,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,055,119 - 11,078,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,638,849 - 12,662,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,638,864 - 12,662,371 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,682,876 - 14,706,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,929,886 - 10,953,939 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,959,813 - 10,983,862 (+)NCBI
Celera1212,398,335 - 12,421,856 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:23084991   PMID:29038162  


Genomics

Comparative Map Data
Ccz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,714,768 - 15,738,273 (+)NCBIGRCr8
mRatBN7.21210,601,066 - 10,624,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,601,056 - 10,624,608 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,407,504 - 11,431,083 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,030,789 - 12,054,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,055,119 - 11,078,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,638,849 - 12,662,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,638,864 - 12,662,371 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,682,876 - 14,706,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,929,886 - 10,953,939 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,959,813 - 10,983,862 (+)NCBI
Celera1212,398,335 - 12,421,856 (+)NCBICelera
Cytogenetic Map12p11NCBI
CCZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3875,898,733 - 5,926,550 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl75,898,725 - 5,926,550 (+)EnsemblGRCh38hg38GRCh38
GRCh3775,938,364 - 5,966,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,904,867 - 5,932,131 (+)NCBINCBI36Build 36hg18NCBI36
Build 3475,711,581 - 5,738,842NCBI
Celera76,829,407 - 6,835,946 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef75,849,935 - 5,864,556 (+)NCBIHuRef
HuRef75,869,039 - 5,871,629 (+)NCBIHuRef
CHM1_175,937,898 - 5,965,231 (+)NCBICHM1_1
T2T-CHM13v2.076,016,485 - 6,044,303 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v275,984,686 - 6,011,950 (+)NCBI
Ccz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,924,727 - 143,951,744 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,924,727 - 143,951,695 (-)EnsemblGRCm39 Ensembl
GRCm385143,987,909 - 144,014,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,987,909 - 144,014,877 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,748,778 - 144,775,722 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,241,436 - 144,268,380 (-)NCBIMGSCv36mm8
Celera5140,970,306 - 140,997,297 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.85NCBI
Ccz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546013,842,679 - 13,867,750 (-)NCBIChiLan1.0ChiLan1.0
LOC100976634
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2610,838,868 - 10,865,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,163,575 - 59,190,630 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,589,572 - 6,617,072 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,940,976 - 6,962,961 (-)NCBIpanpan1.1PanPan1.1panPan2
CCZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,319,191 - 11,350,018 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,944,962 - 12,975,801 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,319,141 - 11,350,001 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,318,914 - 11,349,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,196,282 - 11,226,927 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,167,960 - 11,198,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,401,826 - 11,432,634 (+)NCBIUU_Cfam_GSD_1.0
Ccz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344139,397,636 - 139,424,623 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936750520,639 - 547,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.135,201,228 - 5,228,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,262,066 - 5,289,402 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666102962,460 - 991,321 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474031,396,029 - 31,454,753 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474031,396,040 - 31,454,554 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccz1
107 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:600
Count of miRNA genes:255
Interacting mature miRNAs:323
Transcripts:ENSRNOT00000001365
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat

Markers in Region
RH131271  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,624,394 - 10,624,594 (+)MAPPERmRatBN7.2
Rnor_6.01212,662,157 - 12,662,356NCBIRnor6.0
Rnor_5.01214,706,166 - 14,706,365UniSTSRnor5.0
RGSC_v3.41210,953,726 - 10,953,925UniSTSRGSC3.4
Celera1212,421,643 - 12,421,842UniSTS
Cytogenetic Map12p11UniSTS
BE110334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,614,019 - 10,614,169 (+)MAPPERmRatBN7.2
Rnor_6.01212,651,782 - 12,651,931NCBIRnor6.0
Rnor_5.01214,695,775 - 14,695,924UniSTSRnor5.0
RGSC_v3.41210,943,351 - 10,943,500UniSTSRGSC3.4
Celera1212,411,258 - 12,411,407UniSTS
RH 3.4 Map12120.8UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000001365   ⟹   ENSRNOP00000001365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,601,080 - 10,624,606 (+)Ensembl
Rnor_6.0 Ensembl1212,638,900 - 12,662,371 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080567   ⟹   ENSRNOP00000069032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,601,107 - 10,624,596 (+)Ensembl
Rnor_6.0 Ensembl1212,638,941 - 12,652,802 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092304   ⟹   ENSRNOP00000075762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,646,544 - 12,659,490 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,639,902 - 12,646,562 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092402   ⟹   ENSRNOP00000075808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,649,861 - 12,651,981 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,660,061 - 12,662,187 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,651,493 - 12,651,981 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092587   ⟹   ENSRNOP00000075894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,601,098 - 10,624,603 (+)Ensembl
Rnor_6.0 Ensembl1212,638,864 - 12,662,370 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110028   ⟹   ENSRNOP00000082981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,601,056 - 10,624,608 (+)Ensembl
RefSeq Acc Id: NM_001394280   ⟹   NP_001381209
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,714,768 - 15,738,273 (+)NCBI
mRatBN7.21210,601,099 - 10,624,608 (+)NCBI
RefSeq Acc Id: NM_001394281   ⟹   NP_001381210
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,714,768 - 15,738,273 (+)NCBI
mRatBN7.21210,601,099 - 10,624,608 (+)NCBI
RefSeq Acc Id: NR_172093
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,714,768 - 15,738,273 (+)NCBI
mRatBN7.21210,601,099 - 10,624,608 (+)NCBI
Ensembl Acc Id: ENSRNOP00000075762   ⟸   ENSRNOT00000092304
Ensembl Acc Id: ENSRNOP00000075808   ⟸   ENSRNOT00000092402
Ensembl Acc Id: ENSRNOP00000069032   ⟸   ENSRNOT00000080567
Ensembl Acc Id: ENSRNOP00000075894   ⟸   ENSRNOT00000092587
Ensembl Acc Id: ENSRNOP00000001365   ⟸   ENSRNOT00000001365
Ensembl Acc Id: ENSRNOP00000082981   ⟸   ENSRNOT00000110028
RefSeq Acc Id: NP_001381209   ⟸   NM_001394280
- Peptide Label: isoform 1
- UniProtKB: A0A140UHX9 (UniProtKB/TrEMBL),   A0A0G2JUB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381210   ⟸   NM_001394281
- Peptide Label: isoform 2
Protein Domains
CCZ1/INTU second Longin   CCZ1/INTU/HPS4 third Longin   CCZ1/INTU/HSP4 first Longin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A140UHX9-F1-model_v2 AlphaFold A0A140UHX9 1-480 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698433
Promoter ID:EPDNEW_R8955
Type:initiation region
Name:Ccz1b_1
Description:CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01212,638,876 - 12,638,936EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306410 AgrOrtholog
BioCyc Gene G2FUF-20027 BioCyc
Ensembl Genes ENSRNOG00000001032 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001365.8 UniProtKB/TrEMBL
  ENSRNOT00000080567.2 UniProtKB/TrEMBL
  ENSRNOT00000092587.2 UniProtKB/TrEMBL
  ENSRNOT00000110028.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123188 IMAGE-MGC_LOAD
InterPro CCZ1/INTU/HSP4_longin_1 UniProtKB/TrEMBL
  CCZ1/INTU/HSP4_longin_3 UniProtKB/TrEMBL
  CCZ1/INTU_longin_2 UniProtKB/TrEMBL
  DUF1712_fun UniProtKB/TrEMBL
MGC_CLONE MGC:94051 IMAGE-MGC_LOAD
NCBI Gene 360768 ENTREZGENE
PANTHER PTHR13056 UniProtKB/TrEMBL
  VACUOLAR FUSION PROTEIN CCZ1 HOMOLOG-RELATED UniProtKB/TrEMBL
Pfam Intu_longin_1 UniProtKB/TrEMBL
  Intu_longin_2 UniProtKB/TrEMBL
  Intu_longin_3 UniProtKB/TrEMBL
PhenoGen Ccz1 PhenoGen
RatGTEx ENSRNOG00000001032 RatGTEx
UniProt A0A0G2JUB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RS15_RAT UniProtKB/TrEMBL
  A0A140UHX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVM3_RAT UniProtKB/TrEMBL
  Q6AYE1_RAT UniProtKB/TrEMBL
UniProt Secondary F1MAF6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-02-10 Ccz1  CCZ1 homolog, vacuolar protein trafficking and biogenesis associated  Ccz1b  CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated  Name and Symbol changed 629549 APPROVED
2015-07-30 Ccz1b  CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated  Ccz1b  CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-24 Ccz1b  CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B  Ccz1b  CCZ1 vacuolar protein trafficking and biogenesis associated  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-07-23 Ccz1b  CCZ1 vacuolar protein trafficking and biogenesis associated  Ccz1  CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-05-26 Ccz1  CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)   RGD1306410  similar to CG14980-PB  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306410  similar to CG14980-PB  RGD1306410_predicted  similar to CG14980-PB (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306410_predicted  similar to CG14980-PB (predicted)  LOC360768_predicted  similar to CG14980-PB (predicted)  Symbol and Name status set to approved 1331353 APPROVED