Preb (prolactin regulatory element binding)

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Gene: Preb (prolactin regulatory element binding) Ictidomys tridecemlineatus

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Symbol:

Preb

Name:

prolactin regulatory element binding

RGD ID:

12664773

Description:

ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN COPII vesicle coating (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog); FOUND IN endoplasmic reticulum exit site (ortholog); endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

prolactin regulatory element binding, transcript variant X1; prolactin regulatory element binding, transcript variant X2; prolactin regulatory element binding, transcript variant X3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,419,425 - 65,423,263 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,415,971 - 5,420,138 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	5,416,302 - 5,420,138 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Tatton-Brown-Rahman syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

COPII vesicle coating (ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

positive regulation of transcription by RNA polymerase II (ISO)

protein transport (IEA)

regulation of COPII vesicle coating (IEA)

vesicle-mediated transport (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum exit site (IEA,ISO)

endoplasmic reticulum membrane (IEA,ISO)

membrane (IEA)

nucleus (IEA)

Molecular Function

GTPase binding (IEA)

guanyl-nucleotide exchange factor activity (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Preb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,419,425 - 65,423,263 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,415,971 - 5,420,138 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	5,416,302 - 5,420,138 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PREB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	27,130,756 - 27,134,636 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	27,130,756 - 27,134,666 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	27,353,624 - 27,357,504 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	27,207,128 - 27,211,046 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	27,265,277 - 27,269,193	NCBI
Celera	2	27,199,929 - 27,203,847 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	27,095,474 - 27,099,392 (-)	NCBI		HuRef
CHM1_1	2	27,283,548 - 27,287,466 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	27,172,401 - 27,176,281 (-)	NCBI		T2T-CHM13v2.0

Preb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	31,109,011 - 31,117,700 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	31,108,197 - 31,117,705 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	30,951,667 - 30,960,356 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	30,950,853 - 30,960,361 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	31,254,040 - 31,262,734 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	31,231,629 - 31,236,816 (-)	NCBI		MGSCv36	mm8
Celera	5	28,431,460 - 28,439,754 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	16.9	NCBI

Preb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	31,138,757 - 31,142,544 (+)	NCBI		GRCr8
mRatBN7.2	6	25,418,805 - 25,422,594 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,418,776 - 25,422,590 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	25,719,124 - 25,722,909 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	26,034,988 - 26,038,773 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	25,514,185 - 25,517,956 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	26,784,088 - 26,787,875 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,784,088 - 26,787,874 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,599,703 - 36,603,490 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,401,759 - 25,405,561 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	25,404,792 - 25,408,499 (+)	NCBI
Celera	6	24,909,529 - 24,913,316 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

Preb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	9,098,124 - 9,101,408 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	9,097,579 - 9,101,361 (-)	NCBI	ChiLan1.0	ChiLan1.0

PREB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	99,380,869 - 99,384,810 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	99,384,837 - 99,388,771 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	27,129,731 - 27,133,645 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	27,218,957 - 27,222,876 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	27,218,957 - 27,222,876 (-)	Ensembl	panpan1.1		panPan2

PREB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	21,116,427 - 21,120,250 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	21,117,020 - 21,120,031 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	21,008,243 - 21,012,112 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	21,437,125 - 21,440,994 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	21,437,139 - 21,440,962 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	21,123,848 - 21,127,717 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	21,134,959 - 21,138,828 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	21,181,808 - 21,185,678 (-)	NCBI		UU_Cfam_GSD_1.0

PREB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	111,992,391 - 111,996,559 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	111,992,364 - 111,996,194 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	118,990,851 - 118,994,672 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PREB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	80,485,178 - 80,489,081 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	80,485,252 - 80,488,438 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	31,650,124 - 31,654,028 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Preb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	9,225,194 - 9,233,737 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	9,229,289 - 9,232,985 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013357406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040271475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012221 ⟹ ENSSTOP00000010955

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936493	5,416,308 - 5,419,483 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000041064 ⟹ ENSSTOP00000025023

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936493	5,415,971 - 5,420,138 (+)	Ensembl

RefSeq Acc Id:

XM_005322543 ⟹ XP_005322600

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,419,425 - 65,423,262 (-)	NCBI
SpeTri2.0	NW_004936493	5,416,303 - 5,420,138 (+)	NCBI

Sequence:

show sequence

GGCGCCTGCGCAGTGCGCGTCTTCGAGCTAGAGTCAGACCCGAGTGGAGATAGCTGCTGGTGGG
TGGTTAGAGTTGTCGCAACCCGGCGTGTGTGAAAGGGATCGGGAGTCCTCCCGCCAGCGACCGA
TCTAAGTTCAGCAGCGGCCGGGGAAGTAGCCGAAGTGCGGACGCGGCATGTCCTCGGTGCCTCG
GGGCTGACAGTGAACGCGCGGCGGGCGGGATGGGCCGTCGCCGGGCTCCAGAGCTTTACCGGGC
CCCGTTCCCGTTGTACGCGCTTCAGGTCGACCCCAGCGCGGGCCTGCTCATCGCTGCGGGCGGA
GGAGGCGCTGCCAAGACCGGCATAAAGAATGGAGTGCACTTTCTGCAGCTAGAACAAATTAATG
GGCGCCTAAGCGCTTCCCTGCTGCACTCCCATGACACGGAGACACGGGCTACCATGAACTTGGC
ACTGGCGGGTGATATCCTTGCTGCAGGGCAGGATGCCCAATGTCAGCTCCTGCGTTTCCGGGTC
CATAAGCAGAAAGACAACAAGGCAGAGAAGGCAGGTTCCAAGGAGCAAGGGCTTCGACAAAGGA
AGGGGGCAACCCCAGAAGAGAAGAAATCAGGAGCTGAAACCCATCCTGAGGGGGGAGAGCTCAA
GGTTGAGAATTTGCAGGCAGTGCAGACAAACTTCGGCTCTGATCCACTGCAGAAAGTTGTGTGT
TTCAACCATGATAACACCCTGCTTGCCACTGGAGGAACAGATGGCTTTGTTCGTGTCTGGAAGG
TACCCAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGATATTGAAGACCTGGCTTT
GGGGCCTGATGGCAAGTTGGTAACTGTAGGCTGGGACCTTAAGGCCTCTGTGTGGCAGAAAGAT
CAGCTACTGATGCAGCTGCACTGGCAAGAAAATGGACCCACCTTTTCTAACACGCCTTACCGCT
ATCAGGCTTGCAGGTTTGGGCAGGTTCCAGACCAGCCTTCTGGGCTGCGGCTGTTCACAGTGCA
GATCCCCCACAAGCGGCTGCGCCAGCCCCCACCTTGCTACCTCACAGCCTGGGATGGTTCTTCC
TTCTTGCCTCTTCGTACCAAGCCCTGTGGCAATGAAGTCATCTCCTGCCTCAGTGTCAGTGAAT
CGGGCACCTTCCTAGGCCTGGGTACGGTCACTGGCTCTGTAGCCATCTACATAGCTTTCTCTCT
TCAGCGCCTCTATTACATGAGGGAGGCCCATGGCATTGTGGTTACAGATGTGGCCTTCCTACCT
GAGAAGGGTCGTGGTCCAGAACTTCTCGGGTCCCATGAAACTGCCCTGTTCTCTGTGGCTGTGG
ACAGTCGTTGCCAGTTGCACCTGTTGCCCTCAAGGCGGAGTGTTCCTGTGTGGCTGCTGCTCCT
GTTATGTGTCGGGCTTATTGTTGTGACCATCCTGCTGCTCCAGAGTGCCTTTCCAGGTTTCCTT
TAGCCTCTTTAGCCCCTGGGAATCAGGGGCCTGGACACTGCCACCTTCAAGAGCAGAATAGAGG
CCTGGACTCTTATTACTCCACTTGGATCCATAGTTGAAGCTGCCTCTGATGAGACTGATGGGCC
CTGCTTGCCCTTCTCTGTTAAAGCTTGGTTGTGGCCCTGTGTGATTCTGGGTCCTGGGAGCCCT
GGATTCATCACCTATGGGTCCACCCAAGACACTAATGTCTAAAACCTGGACCATAAATACTACC
TGCCTCCTTCCCTCTGTCTACCAGAGGCTCCAGTGTTGAGCTTGTCCTCCTCCAGGAACATGTG
AAGATGCTGAAGACCCTGGAGGTACTGCCGTCCTTCTCCCCTCACAGCCTTCAAATGATAACCC
TGGTCTTTGTTGAGACAAGGACTGGACTGGCACCTACTATTAAGGCAGGAAAGGGCAAAAAGAA
GACTCAGGTAGCAACCTCTGAGTTCAGGTGGGTAGTGCCAAGCCAACCAGGCTAAACAAGCAGT
AAGTTCCTGGATGGTCTACCCCGGCCTTGAAGAAAGGGAAAAATGAACCTCAGCCCAGTAGGCA
AGAAGAGTTGATATTTAATAAACAAGGGAAGATTGAACTGA

hide sequence

RefSeq Acc Id:

XM_013357406 ⟹ XP_013212860

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,420,082 - 65,423,263 (-)	NCBI
SpeTri2.0	NW_004936493	5,416,302 - 5,419,483 (+)	NCBI

Sequence:

show sequence

GGGCGCCTGCGCAGTGCGCGTCTTCGAGCTAGAGTCAGACCCGAGTGGAGATAGCTGCTGGTGG
GTGGTTAGAGTTGTCGCAACCCGGCGTGTGTGAAAGGGATCGGGAGTCCTCCCGCCAGCGACCG
ATCTAAGTTCAGCAGCGGCCGGGGAAGTAGCCGAAGTGCGGACGCGGCATGTCCTCGGTGCCTC
GGGGCTGACAGTGAACGCGCGGCGGGCGGGATGGGCCGTCGCCGGGCTCCAGAGCTTTACCGGG
CCCCGTTCCCGTTGTACGCGCTTCAGGTCGACCCCAGCGCGGGCCTGCTCATCGCTGCGGGCGG
AGGAGGCGCTGCCAAGACCGGCATAAAGAATGGAGTGCACTTTCTGCAGCTAGAACAAATTAAT
GGGCGCCTAAGCGCTTCCCTGCTGCACTCCCATGACACGGAGACACGGGCTACCATGAACTTGG
CACTGGCGGGTGATATCCTTGCTGCAGGGCAGGATGCCCAATGTCAGCTCCTGCGTTTCCGGGT
CCATAAGCAGAAAGACAACAAGGCAGAGAAGGCAGGTTCCAAGGAGCAAGGGCTTCGACAAAGG
AAGGGGGCAACCCCAGAAGAGAAGAAATCAGGAGCTGAAACCCATCCTGAGGGGGGAGAGCTCA
AGGTTGAGAATTTGCAGGCAGTGCAGACAAACTTCGGCTCTGATCCACTGCAGAAAGTTGTGTG
TTTCAACCATGATAACACCCTGCTTGCCACTGGAGGAACAGATGGCTTTGTTCGTGTCTGGAAG
GTACCCAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGATATTGAAGACCTGGCTT
TGGGGCCTGATGGCAAGTTGGTAACTGTAGGCTGGGACCTTAAGGCCTCTGTGTGGCAGAAAGA
TCAGCTACTGATGCAGCTGCACTGGCAAGAAAATGGACCCACCTTTTCTAACACGCCTTACCGC
TATCAGGCTTGCAGGTTTGGGCAGGTTCCAGACCAGCCTTCTGGGCTGCGGCTGTTCACAGTGC
AGATCCCCCACAAGCGGCTGCGCCAGCCCCCACCTTGCTACCTCACAGCCTGGGATGGTTCTTC
CTTCTTGCCTCTTCGTACCAAGCCCTGTGGCAATGAAGTCATCTCCTGCCTCAGTGTCAGTGAA
TCGGGCACCTTCCTAGGCCTGGGTACGGTCACTGGCTCTGTAGCCATCTACATAGCTTTCTCTC
TTCAGGGAGTGTTCCTGTGTGGCTGCTGCTCCTGTTATGTGTCGGGCTTATTGTTGTGA

hide sequence

RefSeq Acc Id:

XM_021724597 ⟹ XP_021580272

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,420,057 - 65,423,263 (-)	NCBI
SpeTri2.0	NW_004936493	5,416,302 - 5,419,450 (+)	NCBI

Sequence:

show sequence

GGGCGCCTGCGCAGTGCGCGTCTTCGAGCTAGAGTCAGACCCGAGTGGAGATAGCTGCTGGTGG
GTGGTTAGAGTTGTCGCAACCCGGCGTGTGTGAAAGGGATCGGGAGTCCTCCCGCCAGCGACCG
ATCTAAGTTCAGCAGCGGCCGGGGAAGTAGCCGAAGTGCGGACGCGGCATGTCCTCGGTGCCTC
GGGGCTGACAGTGAACGCGCGGCGGGCGGGATGGGCCGTCGCCGGGCTCCAGAGCTTTACCGGG
CCCCGTTCCCGTTGTACGCGCTTCAGGTCGACCCCAGCGCGGGCCTGCTCATCGCTGCGGGCGG
AGGAGGCGCTGCCAAGACCGGCATAAAGAATGGAGTGCACTTTCTGCAGCTAGAACAAATTAAT
GGGCGCCTAAGCGCTTCCCTGCTGCACTCCCATGACACGGAGACACGGGCTACCATGAACTTGG
CACTGGCGGGTGATATCCTTGCTGCAGGGCAGGATGCCCAATGTCAGCTCCTGCGTTTCCGGGT
CCATAAGCAGAAAGACAACAAGGCAGAGAAGGCAGGTTCCAAGGAGCAAGGGCTTCGACAAAGG
AAGGGGGCAACCCCAGAAGAGAAGAAATCAGGAGCTGAAACCCATCCTGAGGGGGGAGAGCTCA
AGGTTGAGAATTTGCAGGCAGTGCAGACAAACTTCGGCTCTGATCCACTGCAGAAAGTTGTGTG
TTTCAACCATGATAACACCCTGCTTGCCACTGGAGGAACAGATGGCTTTGTTCGTGTCTGGAAG
GTACCCAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGATATTGAAGACCTGGCTT
TGGGGCCTGATGGCAAGTTGGTAACTGTAGGCTGGGACCTTAAGGCCTCTGTGTGGCAGAAAGA
TCAGCTACTGATGCAGCTGCACTGGCAAGAAAATGGACCCACCTTTTCTAACACGCCTTACCGC
TATCAGGCTTGCAGGTTTGGGCAGGTTCCAGACCAGCCTTCTGGGCTGCGGCTGTTCACAGTGC
AGATCCCCCACAAGCGGCTGCGCCAGCCCCCACCTTGCTACCTCACAGCCTGGGATGGTTCTTC
CTTCTTGCCTCTTCGTACCAAGCCCTGTGGCAATGAAGTCATCTCCTGCCTCAGTGTCAGTGAA
TCGGGCACCTTCCTAGGCCTGGGTACGGTCACTGGCTCTGTAGCCATCTACATAGCTTTCTCTC
TTCAGCGCCTCTATTACATGAGGGAGGCCCATGGCATTGTGGTTACAGATGTGGCCTTCCTACC
TGAGAAGGGTCGTGGTCCAGAACTTCTCGGGTCCCATGAAACTGCCCTGTTCTCTGTGGCTGTG
GACAGTCGTTGCCAGTTGCACCTGTTGCCCTCAAGGCGTTGAAGGTTTTGGTCTTCAGTCTCTG
AAGCCCCTTTGCTCATTTCTCTCACCTCCACCCACAGGGAGTGTTCCTGTGTGGCTGC

hide sequence

RefSeq Acc Id:

XM_040271475 ⟹ XP_040127409

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,419,425 - 65,422,718 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005322600	(Get FASTA)	NCBI Sequence Viewer
	XP_013212860	(Get FASTA)	NCBI Sequence Viewer
	XP_021580272	(Get FASTA)	NCBI Sequence Viewer
	XP_040127409	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010955.3
	ENSSTOP00000025023.1
GenBank Protein	KAG3267762	(Get FASTA)	NCBI Sequence Viewer
	KAG3267763	(Get FASTA)	NCBI Sequence Viewer
	KAG3267764	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005322600 ⟸ XM_005322543
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CUT2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRRAPELYRAPFPLYALQVDPSAGLLIAAGGGGAAKTGIKNGVHFLQLEQINGRLSASLLHS HDTETRATMNLALAGDILAAGQDAQCQLLRFRVHKQKDNKAEKAGSKEQGLRQRKGATPEEKKS GAETHPEGGELKVENLQAVQTNFGSDPLQKVVCFNHDNTLLATGGTDGFVRVWKVPSLEKVLEF KAHEGDIEDLALGPDGKLVTVGWDLKASVWQKDQLLMQLHWQENGPTFSNTPYRYQACRFGQVP DQPSGLRLFTVQIPHKRLRQPPPCYLTAWDGSSFLPLRTKPCGNEVISCLSVSESGTFLGLGTV TGSVAIYIAFSLQRLYYMREAHGIVVTDVAFLPEKGRGPELLGSHETALFSVAVDSRCQLHLLP SRRSVPVWLLLLLCVGLIVVTILLLQSAFPGFL hide sequence

RefSeq Acc Id:	XP_013212860 ⟸ XM_013357406
- Peptide Label:	isoform X4
- UniProtKB:	I3MIS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRRAPELYRAPFPLYALQVDPSAGLLIAAGGGGAAKTGIKNGVHFLQLEQINGRLSASLLHS HDTETRATMNLALAGDILAAGQDAQCQLLRFRVHKQKDNKAEKAGSKEQGLRQRKGATPEEKKS GAETHPEGGELKVENLQAVQTNFGSDPLQKVVCFNHDNTLLATGGTDGFVRVWKVPSLEKVLEF KAHEGDIEDLALGPDGKLVTVGWDLKASVWQKDQLLMQLHWQENGPTFSNTPYRYQACRFGQVP DQPSGLRLFTVQIPHKRLRQPPPCYLTAWDGSSFLPLRTKPCGNEVISCLSVSESGTFLGLGTV TGSVAIYIAFSLQGVFLCGCCSCYVSGLLL hide sequence

RefSeq Acc Id:

XP_021580272 ⟸ XM_021724597

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGRRRAPELYRAPFPLYALQVDPSAGLLIAAGGGGAAKTGIKNGVHFLQLEQINGRLSASLLHS
HDTETRATMNLALAGDILAAGQDAQCQLLRFRVHKQKDNKAEKAGSKEQGLRQRKGATPEEKKS
GAETHPEGGELKVENLQAVQTNFGSDPLQKVVCFNHDNTLLATGGTDGFVRVWKVPSLEKVLEF
KAHEGDIEDLALGPDGKLVTVGWDLKASVWQKDQLLMQLHWQENGPTFSNTPYRYQACRFGQVP
DQPSGLRLFTVQIPHKRLRQPPPCYLTAWDGSSFLPLRTKPCGNEVISCLSVSESGTFLGLGTV
TGSVAIYIAFSLQRLYYMREAHGIVVTDVAFLPEKGRGPELLGSHETALFSVAVDSRCQLHLLP
SRR

hide sequence

RefSeq Acc Id:	XP_040127409 ⟸ XM_040271475
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000010955 ⟸ ENSSTOT00000012221

Ensembl Acc Id:

ENSSTOP00000025023 ⟸ ENSSTOT00000041064

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012225	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012221.3	UniProtKB/TrEMBL
	ENSSTOT00000041064.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Quinoprotein_ADH-like_supfam	UniProtKB/TrEMBL
	Sec12-like	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
NCBI Gene	Preb	ENTREZGENE
PANTHER	PROLACTIN REGULATORY ELEMENT-BINDING PROTEIN	UniProtKB/TrEMBL
	PTHR23284	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50998	UniProtKB/TrEMBL
UniProt	A0A287CUT2	ENTREZGENE, UniProtKB/TrEMBL
	I3MIS0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar