Psmb9 (proteasome 20S subunit beta 9) - Rat Genome Database

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Gene: Psmb9 (proteasome 20S subunit beta 9) Ictidomys tridecemlineatus
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Symbol: Psmb9
Name: proteasome 20S subunit beta 9
RGD ID: 12599005
Description: ENCODES a protein that exhibits proteasome binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to electrical stimulus (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH acrodermatitis (ortholog); adult respiratory distress syndrome (ortholog); ankylosing spondylitis (ortholog); FOUND IN proteasome complex (ortholog); spermatoproteasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit beta 9; proteasome subunit beta 9, transcript variant X1; proteasome subunit beta 9, transcript variant X2; proteasome subunit beta type-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mIctTri1.hap1 - mIctTri1.hap1 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap18117,335,303 - 117,340,237 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494638,061,110 - 38,065,954 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,894,027 - 25,899,319 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,894,313 - 25,899,132 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0



Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psmb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap18117,335,303 - 117,340,237 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494638,061,110 - 38,065,954 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,894,027 - 25,899,319 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,894,313 - 25,899,132 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,854,192 - 32,859,851 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,844,136 - 32,882,881 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37632,821,969 - 32,827,628 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,929,916 - 32,935,606 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34632,929,933 - 32,935,336NCBI
Celera634,370,831 - 34,376,521 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,564,144 - 32,569,834 (+)NCBIHuRef
CHM1_1632,822,763 - 32,828,450 (+)NCBICHM1_1
T2T-CHM13v2.0632,675,567 - 32,681,226 (+)NCBIT2T-CHM13v2.0
Psmb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,401,006 - 34,406,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,400,960 - 34,406,738 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381734,182,030 - 34,187,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,181,987 - 34,187,764 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371734,319,044 - 34,324,275 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361733,792,387 - 33,797,618 (-)NCBIMGSCv36mm8
Celera1736,935,695 - 36,940,923 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Psmb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,668,952 - 4,674,421 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,668,739 - 4,674,421 (+)EnsemblGRCr8
mRatBN7.2204,667,044 - 4,672,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,666,046 - 4,672,512 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,419,808 - 5,425,350 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,781,551 - 4,787,093 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,263,042 - 5,268,470 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd205,061,993 - 5,067,421 (+)NCBI
Lyon_Normotensive206,046,215 - 6,051,645 (+)NCBI
Lyon_Hypertensive206,049,144 - 6,054,574 (+)NCBI
F344_StmMcwi205,077,237 - 5,082,665 (+)NCBI
Rnor_6.0203,973,424 - 3,978,845 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,973,420 - 3,978,845 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0206,052,972 - 6,058,393 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,801,187 - 4,806,608 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,268,113 - 6,273,528 (+)NCBICelera
RGSC_v3.1204,801,449 - 4,806,835 (+)NCBI
RH 3.4 Map2058.54RGD
Cytogenetic Map20p12NCBI
Psmb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,513,418 - 1,516,164 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554371,513,425 - 1,516,164 (+)NCBIChiLan1.0ChiLan1.0
PSMB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,329,230 - 47,334,677 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,200,782 - 43,211,683 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,423,614 - 32,429,062 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,539,060 - 33,544,541 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,539,060 - 33,564,402 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
PSMB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,432,287 - 2,438,920 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,432,505 - 2,438,069 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha122,514,269 - 2,519,652 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0122,714,362 - 2,719,981 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,714,362 - 2,719,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,431,658 - 2,437,234 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,513,127 - 2,518,651 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,587,464 - 2,593,086 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PSMB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,072,323 - 25,078,322 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1725,072,133 - 25,077,508 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,438,756 - 29,444,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11732,962,651 - 32,968,143 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604432,640,507 - 32,645,947 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11739,246,356 - 39,251,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,245,854 - 39,251,842 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Psmb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475423,811,008 - 23,815,432 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462475423,807,272 - 23,815,417 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Psmb9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1188,139,601 - 8,145,201 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000003466   ⟹   ENSSTOP00000003101
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647625,894,027 - 25,899,319 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000033679   ⟹   ENSSTOP00000030592
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647625,894,474 - 25,895,443 (-)Ensembl
RefSeq Acc Id: XM_005318841   ⟹   XP_005318898
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
mIctTri1.hap18117,335,303 - 117,340,237 (-)NCBI
HiC_Itri_2NW_02440494638,061,110 - 38,065,954 (+)NCBI
SpeTri2.0NW_00493647625,894,313 - 25,899,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_078020229   ⟹   XP_077876355
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
mIctTri1.hap18117,335,303 - 117,340,198 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005318898 (Get FASTA)   NCBI Sequence Viewer  
  XP_077876355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003101.2
  ENSSTOP00000030592.1
  ENSSTOP00015021749
GenBank Protein KAG3289190 (Get FASTA)   NCBI Sequence Viewer  
  KAG3289191 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005318898   ⟸   XM_005318841
- Peptide Label: isoform X1
- UniProtKB: I3M2B9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000030592   ⟸   ENSSTOT00000033679
Ensembl Acc Id: ENSSTOP00000003101   ⟸   ENSSTOT00000003466
RefSeq Acc Id: XP_077876355   ⟸   XM_078020229
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003475 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00015017633 ENTREZGENE
Ensembl Transcript ENSSTOT00000003466.3 UniProtKB/TrEMBL
  ENSSTOT00000033679.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/TrEMBL
KEGG Report iti:101960438 UniProtKB/TrEMBL
NCBI Gene Psmb9 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
PRINTS PROTEASOME UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A287DAJ2_ICTTR UniProtKB/TrEMBL
  I3M2B9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Psmb9  proteasome 20S subunit beta 9  Psmb9  proteasome subunit beta 9  Symbol and/or name change 5135510 APPROVED