Elk1 (ETS transcription factor ELK1)

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Gene: Elk1 (ETS transcription factor ELK1) Ictidomys tridecemlineatus

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Symbol:

Elk1

Name:

ETS transcription factor ELK1

RGD ID:

12589631

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); double-stranded DNA binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to gamma radiation (ortholog); cellular response to lipid (ortholog); cellular response to testosterone stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; hypoxia inducible factor pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anxiety disorder (ortholog); autistic disorder (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); mitochondrial membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ELK1, ETS transcription factor; ELK1, ETS transcription factor, transcript variant X1; ELK1, ETS transcription factor, transcript variant X2; ELK1, ETS transcription factor, transcript variant X3; ETS domain-containing protein Elk-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,561,981 - 33,577,464 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	13,402,728 - 13,418,214 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	13,402,726 - 13,418,214 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

anxiety disorder (ISO)

autistic disorder (ISO)

Brain Injuries (ISO)

congenital disorder of glycosylation type IIm (ISO)

Fetal Growth Retardation (ISO)

Huntington's disease (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

Lewy body dementia (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

schizophrenia (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

transient cerebral ischemia (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cellular response to gamma radiation (ISO)

cellular response to lipid (ISO)

cellular response to testosterone stimulus (ISO)

gene expression (IEA,ISO)

hippocampal neuron apoptotic process (ISO)

liver development (IEA,ISO)

lung development (IEA,ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

response to ethanol (ISO)

response to fibroblast growth factor (ISO)

response to light stimulus (ISO)

Cellular Component

axon terminus (ISO)

dendrite (ISO)

mitochondrial membrane (ISO)

neuronal cell body (ISO)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

double-stranded DNA binding (ISO)

mediator complex binding (IEA)

nuclear receptor coactivator activity (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA,ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

transcription regulator activator activity (IEA)

transcription regulator inhibitor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

adenosine signaling pathway (ISO)

hypoxia inducible factor pathway (ISO)

platelet-derived growth factor signaling pathway (ISO)

sphingosine 1-phosphate signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Elk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,561,981 - 33,577,464 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	13,402,728 - 13,418,214 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	13,402,726 - 13,418,214 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	47,635,520 - 47,650,604 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	47,635,520 - 47,650,604 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	47,494,919 - 47,510,003 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	47,379,864 - 47,394,964 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	47,251,173 - 47,266,274	NCBI
Celera	X	51,690,183 - 51,705,266 (-)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	45,207,767 - 45,222,756 (-)	NCBI		HuRef
CHM1_1	X	47,526,023 - 47,541,139 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	47,045,421 - 47,060,507 (-)	NCBI		T2T-CHM13v2.0

Elk1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	20,799,634 - 20,816,847 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	20,799,634 - 20,816,847 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	20,933,395 - 20,950,608 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	20,933,395 - 20,950,608 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	20,510,521 - 20,527,726 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	20,091,886 - 20,107,552 (-)	NCBI		MGSCv36	mm8
Celera	X	19,067,257 - 19,084,739 (-)	NCBI		Celera
Cytogenetic Map	X	A1.3	NCBI
cM Map	X	16.45	NCBI

Elk1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	3,692,367 - 3,709,252 (+)	NCBI		GRCr8
mRatBN7.2	X	1,138,826 - 1,155,713 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	1,139,756 - 1,155,713 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	1,167,915 - 1,183,790 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	4,643,607 - 4,659,482 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	964,852 - 980,733 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	1,287,875 - 1,304,822 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	1,297,099 - 1,304,822 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	2,102,893 - 2,119,843 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	12,597,863 - 12,604,248 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	1,708,719 - 1,724,604 (+)	NCBI		Celera
Cytogenetic Map	X	q11	NCBI

Elk1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	430,775 - 444,871 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955516	431,081 - 444,871 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	49,261,994 - 49,277,081 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	49,265,366 - 49,280,456 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	40,071,433 - 40,086,518 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	47,967,492 - 47,982,590 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	47,967,492 - 47,982,579 (-)	Ensembl	panpan1.1		panPan2

ELK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	41,256,205 - 41,270,656 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	41,257,482 - 41,270,776 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,630,809 - 15,645,355 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	41,390,004 - 41,404,542 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	41,390,011 - 41,404,542 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	41,377,550 - 41,392,091 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	41,365,833 - 41,380,367 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	41,458,515 - 41,473,055 (-)	NCBI		UU_Cfam_GSD_1.0

CFP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	42,157,988 - 42,174,951 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	42,157,980 - 42,174,964 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,303,918 - 47,320,907 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103231899
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	44,812,681 - 44,827,657 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666868	398 - 6,908 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elk1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624978	194,992 - 208,103 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624978	194,985 - 208,105 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000009930 ⟹ ENSSTOP00000008908

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936502	13,402,728 - 13,418,214 (-)	Ensembl

RefSeq Acc Id:

XM_005324028 ⟹ XP_005324085

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,561,981 - 33,577,464 (-)	NCBI
SpeTri2.0	NW_004936502	13,402,734 - 13,418,214 (-)	NCBI

Sequence:

show sequence

CGCCGCACCACGCACAGGTACCTCTGGGATGGCGTGAGCGCTTCCCCAGCGATGGACCCATCTG
TGACGCTGTGGCAGTTTCTGCTGCAGCTTTTGAGAGAGCAAGGCAATGGCCACATCATCTCCTG
GACTTCACGGGATGGTGGTGAGTTCAAGCTGGTGGACGCAGAGGAGGTGGCCCGGCTGTGGGGG
CTGCGCAAGAACAAGACCAACATGAATTATGACAAGCTCAGCCGGGCCTTGCGGTACTACTATG
ACAAGAATATCATCCGCAAAGTGAGTGGCCAGAAGTTTGTCTACAAGTTTGTGTCCTACCCCGA
GGTTGCAAGGTGCTCCACAGAGGACTGCCTACCCCAGGCCGAGGTATCTGTAGCCTCTGCCGTG
GCAAATGTGGCCCCTGCTGCTGTACATGCTGCCCCCGGGGACACTGCCTCTGGAAAGCCAGGCA
CACCCAAGGGTGCAGGAATAGCAGGCCCAGGCGGTCTGGCACGCAGCAGCCGGAATGAGTACAT
GCGCTCCGGCCTCTACTCCACCTTCACCATCCAGTCCCTGCAGCCACAGCCACCCCCTCATCCT
CGGCCAGCCTCGGTGCTTCCCAACACCACCCCTGCAGGAGCAGCAGCACCTCCCCCAGGGAGCA
GGAGCACCAGTCCAAACCCCTTGGAGGCTTGTCTGGATGCAGAAGAGGCTGGCCTGCCTCTGCA
GGTCATCCTGACTCCGCCTGAGGCCCCAAACATGAAATCGGAAGAACTGAATGTGGAGCCAGGT
TTGGGCCGGTCACTGCCCCCAGAGGTGAAAGTGGAAGGGCCCAAGGAAGACTTGGGAGCTGCAG
GGGAGGTGGGGTTTGTGCCAGAAGCTGCCAAGGCTGGTCCCGAAGTCCCTCCTGCAGAGGGCAT
GCCAGCCCGGATGCCCGCTGTTGTTATGGAAACTACAGCACAGGTGGGTGGCCTTGCGGCCTCC
ACCACTGAAATCACCCAGCCACAAAAAGGCCGGAAGCCCCGGGACCTGGAGCTTCCACTCAGCC
CAAGCCTGCTGGGTGGACCAGGACCCGAACGGACTCCAGGATCAGGAACTGGCTCTGGTGTGCA
GGCACCAGGGCCAGCACTAACGCCATCCCTGCTACCTACGCATACGTTGACCCCGGTGCTGCTG
ACGCCCAGCTCGCTGCCCCCCAGCATTCACTTCTGGAGCACCCTGAGTCCTATCGCACCCCGAA
GCCCAGCCAAGCTCTCCTTCCAGTTTCCGTCCAGTGGCAGCGCCCAGGTGCACATCCCTTCCAT
CAGCGTGGATGGCCTCTCGACCCCCGTGGTGCTCTCCCCAGGGCCCCAGAAGCCATGACTACCG
CCACCACCAACCCTTTCTGGGGTCACTCCATCTGTGACCCTGAACTTCTCTCCAGCCAGCCATC
TCAAGGAGAAACATAGTTCACTGACAGACTCAAGCTCTGGTTGTGGTGGGGTGGGGAATTCCTG
GGAAGAAGGATCTCTCACTAACTCCTTCACCGAAAACCTACAACTTCTGTCTTCTTCGTCAGTC
CCCCAGTGGCCGCCCTTACACGTCTCCTACTTCAGTGGTAGGGGCGGTTTATTTATTTATTTTT
TGAAGGCCACTGGGAGGAGCCTGGCCCAACCCTTTTAGGGGGGTGGTTAAGACATCTCCCCCAT
CTCCCCCATCTCCCTACTTTTTTCCCTAAGACAAGACAATCGGGGTCTGGCTTGAGAAGGACCT
TTCTTTATTTATTTCTCAGCCTGCCCTTGGGGAGATGAGGGAGCCCTGTCTCCATTTTGGGGTG
TGGGTAGAAGAGCTAGTTTGCTTTGTTTTATTATTCCTGGCCATCCCAAGGGTTCAGGAAGAAT
TTATCCGCTTTAATGGTTTAGGAGTCTTGACCAAGAAAGGATCACACCCTGGAAAGAGGAATTT
CCACCTCCCCAACCTTTCTCTCAGACAGCTTGTCCTTTACTCGACCAACATTGTGGCCAGGGAG
GAACACCCTTTTGTTGTTCTCTCCCCTGAGAAGCCATTCCTTTGTCTGCCAAACTCCCTGGGGT
CCTGCCTGTTACCTCCCAATGGAGGGTTTTTTTCGGGGGTGGTCCCCGTCTGGGGGACCCCTCC
AACCAGTACTCCAAGTTTCCCTGTCTTTCACCCCCTGCCATTTTGATAGTATAATCTATTTTTA
AATGGGGCTTTTCAATAGGGGAGAGGGAGGCATCTCTTCCTATATCTGATGGGGTGGGTGGGTG
GGAAGGAAGGGATTTGGGGGTGATCTTCATGCTGCCCCCAAGTGTTTATTTTTGATACCAAACG
TATTTTCAGCTCCCTCCCTCCCAGCCCCCCAATTTCCTGCGGGCGGGTACAAAGGACCCTTTAA
GTGTCCCTGGAGTTGGGAGGGAGGAACAGGGGACATAAAGCCTGTCTTGTCTCAATTCCAGGCT
GGAGAGGGTGGGTTCAAAAGACACCTGAGCTCATCTCCTCTCAGCACCAGCCCAACCCAGGCCT
GGGGATCTGGAGGTTGGTGATTCGGGGACGGTGCTACACTCGTCTCCTCTGTTTGTTTTACTTC
CCCAAAATGGACCTTTTTTTCTAAGAGTCCCAGAGAATGGGGAATTGTTCCTGTAAATATATAT
TTTTAAAGGTG

hide sequence

RefSeq Acc Id:

XM_013358019 ⟹ XP_013213473

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,561,981 - 33,573,379 (-)	NCBI
SpeTri2.0	NW_004936502	13,402,732 - 13,414,307 (-)	NCBI

Sequence:

show sequence

TTTAACTCTGAGTAAAATATCCCCATTTTATAGATGAGCAACCAGGTACAGAGAGGCTGAGTGC
TTGCTCAAAGCCACACGGACAGAACAGGGCAGAGGAACATGAGACTGTTCTCCAAAGAGGAGAT
TTGCAAGAGTAGCCAGGTTATTTGATGTATTGGTTCATTTAGAAGAATGAATTCTGCCTGGTAG
GTCCTGGAACATGATGATTGTGTCATGAAGAGTTCATCAGTGGAAGGAATGGCTCCCCTGGCAG
GGAGAACAGCATGAATGTATTTTCAGAGGTACCTCTGGGATGGCGTGAGCGCTTCCCCAGCGAT
GGACCCATCTGTGACGCTGTGGCAGTTTCTGCTGCAGCTTTTGAGAGAGCAAGGCAATGGCCAC
ATCATCTCCTGGACTTCACGGGATGGTGGTGAGTTCAAGCTGGTGGACGCAGAGGAGGTGGCCC
GGCTGTGGGGGCTGCGCAAGAACAAGACCAACATGAATTATGACAAGCTCAGCCGGGCCTTGCG
GTACTACTATGACAAGAATATCATCCGCAAAGTGAGTGGCCAGAAGTTTGTCTACAAGTTTGTG
TCCTACCCCGAGGTTGCAAGGTGCTCCACAGAGGACTGCCTACCCCAGGCCGAGGTATCTGTAG
CCTCTGCCGTGGCAAATGTGGCCCCTGCTGCTGTACATGCTGCCCCCGGGGACACTGCCTCTGG
AAAGCCAGGCACACCCAAGGGTGCAGGAATAGCAGGCCCAGGCGGTCTGGCACGCAGCAGCCGG
AATGAGTACATGCGCTCCGGCCTCTACTCCACCTTCACCATCCAGTCCCTGCAGCCACAGCCAC
CCCCTCATCCTCGGCCAGCCTCGGTGCTTCCCAACACCACCCCTGCAGGAGCAGCAGCACCTCC
CCCAGGGAGCAGGAGCACCAGTCCAAACCCCTTGGAGGCTTGTCTGGATGCAGAAGAGGCTGGC
CTGCCTCTGCAGGTCATCCTGACTCCGCCTGAGGCCCCAAACATGAAATCGGAAGAACTGAATG
TGGAGCCAGGTTTGGGCCGGTCACTGCCCCCAGAGGTGAAAGTGGAAGGGCCCAAGGAAGACTT
GGGAGCTGCAGGGGAGGTGGGGTTTGTGCCAGAAGCTGCCAAGGCTGGTCCCGAAGTCCCTCCT
GCAGAGGGCATGCCAGCCCGGATGCCCGCTGTTGTTATGGAAACTACAGCACAGGTGGGTGGCC
TTGCGGCCTCCACCACTGAAATCACCCAGCCACAAAAAGGCCGGAAGCCCCGGGACCTGGAGCT
TCCACTCAGCCCAAGCCTGCTGGGTGGACCAGGACCCGAACGGACTCCAGGATCAGGAACTGGC
TCTGGTGTGCAGGCACCAGGGCCAGCACTAACGCCATCCCTGCTACCTACGCATACGTTGACCC
CGGTGCTGCTGACGCCCAGCTCGCTGCCCCCCAGCATTCACTTCTGGAGCACCCTGAGTCCTAT
CGCACCCCGAAGCCCAGCCAAGCTCTCCTTCCAGTTTCCGTCCAGTGGCAGCGCCCAGGTGCAC
ATCCCTTCCATCAGCGTGGATGGCCTCTCGACCCCCGTGGTGCTCTCCCCAGGGCCCCAGAAGC
CATGACTACCGCCACCACCAACCCTTTCTGGGGTCACTCCATCTGTGACCCTGAACTTCTCTCC
AGCCAGCCATCTCAAGGAGAAACATAGTTCACTGACAGACTCAAGCTCTGGTTGTGGTGGGGTG
GGGAATTCCTGGGAAGAAGGATCTCTCACTAACTCCTTCACCGAAAACCTACAACTTCTGTCTT
CTTCGTCAGTCCCCCAGTGGCCGCCCTTACACGTCTCCTACTTCAGTGGTAGGGGCGGTTTATT
TATTTATTTTTTGAAGGCCACTGGGAGGAGCCTGGCCCAACCCTTTTAGGGGGGTGGTTAAGAC
ATCTCCCCCATCTCCCCCATCTCCCTACTTTTTTCCCTAAGACAAGACAATCGGGGTCTGGCTT
GAGAAGGACCTTTCTTTATTTATTTCTCAGCCTGCCCTTGGGGAGATGAGGGAGCCCTGTCTCC
ATTTTGGGGTGTGGGTAGAAGAGCTAGTTTGCTTTGTTTTATTATTCCTGGCCATCCCAAGGGT
TCAGGAAGAATTTATCCGCTTTAATGGTTTAGGAGTCTTGACCAAGAAAGGATCACACCCTGGA
AAGAGGAATTTCCACCTCCCCAACCTTTCTCTCAGACAGCTTGTCCTTTACTCGACCAACATTG
TGGCCAGGGAGGAACACCCTTTTGTTGTTCTCTCCCCTGAGAAGCCATTCCTTTGTCTGCCAAA
CTCCCTGGGGTCCTGCCTGTTACCTCCCAATGGAGGGTTTTTTTCGGGGGTGGTCCCCGTCTGG
GGGACCCCTCCAACCAGTACTCCAAGTTTCCCTGTCTTTCACCCCCTGCCATTTTGATAGTATA
ATCTATTTTTAAATGGGGCTTTTCAATAGGGGAGAGGGAGGCATCTCTTCCTATATCTGATGGG
GTGGGTGGGTGGGAAGGAAGGGATTTGGGGGTGATCTTCATGCTGCCCCCAAGTGTTTATTTTT
GATACCAAACGTATTTTCAGCTCCCTCCCTCCCAGCCCCCCAATTTCCTGCGGGCGGGTACAAA
GGACCCTTTAAGTGTCCCTGGAGTTGGGAGGGAGGAACAGGGGACATAAAGCCTGTCTTGTCTC
AATTCCAGGCTGGAGAGGGTGGGTTCAAAAGACACCTGAGCTCATCTCCTCTCAGCACCAGCCC
AACCCAGGCCTGGGGATCTGGAGGTTGGTGATTCGGGGACGGTGCTACACTCGTCTCCTCTGTT
TGTTTTACTTCCCCAAAATGGACCTTTTTTTCTAAGAGTCCCAGAGAATGGGGAATTGTTCCTG
TAAATATATATTTTTAAAGGTGTT

hide sequence

RefSeq Acc Id:

XM_021725593 ⟹ XP_021581268

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,561,981 - 33,573,637 (-)	NCBI
SpeTri2.0	NW_004936502	13,402,726 - 13,414,419 (-)	NCBI

Sequence:

show sequence

GATTTACATTTTTGAGTGTCTGCCATGTACCAGAAACATATTTTTAAGCCCTTCATGCATATTA
ACATTTAACCCGCATAAAAGCCCTTGAGGTAGATGATTTTTTTAAATATTTAACTCTGAGTAAA
ATATCCCCATTTTATAGATGAGCAACCAGGTACAGAGAGGCTGAGTGCTTGCTCAAAGCCACAC
GGACAGAACAGGGCAGAGGAACATGAGACTGTTCTCCAAAGAGGAGATTTGCAAGAGTAGCCAG
GTTATTTGATGTATTGGTTCATTTAGAAGAATGAATTCTGCCTGGTAGGTCCTGGAACATGATG
ATTGTGTCATGAAGAGTTCATCAGTGGAAGGAATGGCTCCCCTGGCAGGGAGAACAGCATGAAT
GTATTTTCAGAGGTACCTCTGGGATGGCGTGAGCGCTTCCCCAGCGATGGACCCATCTGTGACG
CTGTGGCAGTTTCTGCTGCAGCTTTTGAGAGAGCAAGGCAATGGCCACATCATCTCCTGGACTT
CACGGGATGGTGGTGAGTTCAAGCTGGTGGACGCAGAGGAGGTGGCCCGGCTGTGGGGGCTGCG
CAAGAACAAGACCAACATGAATTATGACAAGCTCAGCCGGGCCTTGCGGTACTACTATGACAAG
AATATCATCCGCAAAGTGAGTGGCCAGAAGTTTGTCTACAAGTTTGTGTCCTACCCCGAGGTTG
CAAGGTGCTCCACAGAGGACTGCCTACCCCAGGCCGAGGTATCTGTAGCCTCTGCCGTGGCAAA
TGTGGCCCCTGCTGCTGTACATGCTGCCCCCGGGGACACTGCCTCTGGAAAGCCAGGCACACCC
AAGGGTGCAGGAATAGCAGGCCCAGGCGGTCTGGCACGCAGCAGCCGGAATGAGTACATGCGCT
CCGGCCTCTACTCCACCTTCACCATCCAGTCCCTGCAGCCACAGCCACCCCCTCATCCTCGGCC
AGCCTCGGTGCTTCCCAACACCACCCCTGCAGGAGCAGCAGCACCTCCCCCAGGGAGCAGGAGC
ACCAGTCCAAACCCCTTGGAGGCTTGTCTGGATGCAGAAGAGGCTGGCCTGCCTCTGCAGACCC
CGGTGCTGCTGACGCCCAGCTCGCTGCCCCCCAGCATTCACTTCTGGAGCACCCTGAGTCCTAT
CGCACCCCGAAGCCCAGCCAAGCTCTCCTTCCAGTTTCCGTCCAGTGGCAGCGCCCAGGTGCAC
ATCCCTTCCATCAGCGTGGATGGCCTCTCGACCCCCGTGGTGCTCTCCCCAGGGCCCCAGAAGC
CATGACTACCGCCACCACCAACCCTTTCTGGGGTCACTCCATCTGTGACCCTGAACTTCTCTCC
AGCCAGCCATCTCAAGGAGAAACATAGTTCACTGACAGACTCAAGCTCTGGTTGTGGTGGGGTG
GGGAATTCCTGGGAAGAAGGATCTCTCACTAACTCCTTCACCGAAAACCTACAACTTCTGTCTT
CTTCGTCAGTCCCCCAGTGGCCGCCCTTACACGTCTCCTACTTCAGTGGTAGGGGCGGTTTATT
TATTTATTTTTTGAAGGCCACTGGGAGGAGCCTGGCCCAACCCTTTTAGGGGGGTGGTTAAGAC
ATCTCCCCCATCTCCCCCATCTCCCTACTTTTTTCCCTAAGACAAGACAATCGGGGTCTGGCTT
GAGAAGGACCTTTCTTTATTTATTTCTCAGCCTGCCCTTGGGGAGATGAGGGAGCCCTGTCTCC
ATTTTGGGGTGTGGGTAGAAGAGCTAGTTTGCTTTGTTTTATTATTCCTGGCCATCCCAAGGGT
TCAGGAAGAATTTATCCGCTTTAATGGTTTAGGAGTCTTGACCAAGAAAGGATCACACCCTGGA
AAGAGGAATTTCCACCTCCCCAACCTTTCTCTCAGACAGCTTGTCCTTTACTCGACCAACATTG
TGGCCAGGGAGGAACACCCTTTTGTTGTTCTCTCCCCTGAGAAGCCATTCCTTTGTCTGCCAAA
CTCCCTGGGGTCCTGCCTGTTACCTCCCAATGGAGGGTTTTTTTCGGGGGTGGTCCCCGTCTGG
GGGACCCCTCCAACCAGTACTCCAAGTTTCCCTGTCTTTCACCCCCTGCCATTTTGATAGTATA
ATCTATTTTTAAATGGGGCTTTTCAATAGGGGAGAGGGAGGCATCTCTTCCTATATCTGATGGG
GTGGGTGGGTGGGAAGGAAGGGATTTGGGGGTGATCTTCATGCTGCCCCCAAGTGTTTATTTTT
GATACCAAACGTATTTTCAGCTCCCTCCCTCCCAGCCCCCCAATTTCCTGCGGGCGGGTACAAA
GGACCCTTTAAGTGTCCCTGGAGTTGGGAGGGAGGAACAGGGGACATAAAGCCTGTCTTGTCTC
AATTCCAGGCTGGAGAGGGTGGGTTCAAAAGACACCTGAGCTCATCTCCTCTCAGCACCAGCCC
AACCCAGGCCTGGGGATCTGGAGGTTGGTGATTCGGGGACGGTGCTACACTCGTCTCCTCTGTT
TGTTTTACTTCCCCAAAATGGACCTTTTTTTCTAAGAGTCCCAGAGAATGGGGAATTGTTCCTG
TAAATATATATTTTTAAAGGTGTTGCTGGA

hide sequence

RefSeq Acc Id:

XM_040279106 ⟹ XP_040135040

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	33,561,981 - 33,571,673 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005324085	(Get FASTA)	NCBI Sequence Viewer
	XP_013213473	(Get FASTA)	NCBI Sequence Viewer
	XP_021581268	(Get FASTA)	NCBI Sequence Viewer
	XP_040135040	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008908.2
GenBank Protein	KAG3272029	(Get FASTA)	NCBI Sequence Viewer
	KAG3272030	(Get FASTA)	NCBI Sequence Viewer
	KAG3272031	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013213473 ⟸ XM_013358019

- Peptide Label:

isoform X1

- Sequence:

show sequence

MYFQRYLWDGVSASPAMDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGL
RKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVSYPEVARCSTEDCLPQAEVSVASAVA
NVAPAAVHAAPGDTASGKPGTPKGAGIAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPR
PASVLPNTTPAGAAAPPPGSRSTSPNPLEACLDAEEAGLPLQVILTPPEAPNMKSEELNVEPGL
GRSLPPEVKVEGPKEDLGAAGEVGFVPEAAKAGPEVPPAEGMPARMPAVVMETTAQVGGLAAST
TEITQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGTGSGVQAPGPALTPSLLPTHTLTPVLLT
PSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQKP

hide sequence

RefSeq Acc Id:	XP_005324085 ⟸ XM_005324028
- Peptide Label:	isoform X2
- UniProtKB:	I3MEI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL RYYYDKNIIRKVSGQKFVYKFVSYPEVARCSTEDCLPQAEVSVASAVANVAPAAVHAAPGDTAS GKPGTPKGAGIAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPRPASVLPNTTPAGAAAP PPGSRSTSPNPLEACLDAEEAGLPLQVILTPPEAPNMKSEELNVEPGLGRSLPPEVKVEGPKED LGAAGEVGFVPEAAKAGPEVPPAEGMPARMPAVVMETTAQVGGLAASTTEITQPQKGRKPRDLE LPLSPSLLGGPGPERTPGSGTGSGVQAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSP IAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQKP hide sequence

RefSeq Acc Id:

XP_021581268 ⟸ XM_021725593

- Peptide Label:

isoform X3

- Sequence:

show sequence

MYFQRYLWDGVSASPAMDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGL
RKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVSYPEVARCSTEDCLPQAEVSVASAVA
NVAPAAVHAAPGDTASGKPGTPKGAGIAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPR
PASVLPNTTPAGAAAPPPGSRSTSPNPLEACLDAEEAGLPLQTPVLLTPSSLPPSIHFWSTLSP
IAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQKP

hide sequence

RefSeq Acc Id:	XP_040135040 ⟸ XM_040279106
- Peptide Label:	isoform X2
- UniProtKB:	I3MEI5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000008908 ⟸ ENSSTOT00000009930

Protein Domains

ETS

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009932	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009930.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Ets_dom	UniProtKB/TrEMBL
	ETS_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Elk1	ENTREZGENE
PANTHER	ETS DOMAIN-CONTAINING PROTEIN ELK-1	UniProtKB/TrEMBL
	PTHR11849	UniProtKB/TrEMBL
Pfam	Ets	UniProtKB/TrEMBL
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
SMART	ETS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	I3MEI5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-29	Elk1	ETS transcription factor ELK1		ELK1, ETS transcription factor	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

Imported Annotations - PID (archival)