Ank3 (ankyrin 3) - Rat Genome Database

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Gene: Ank3 (ankyrin 3) Ictidomys tridecemlineatus
Analyze
Symbol: Ank3
Name: ankyrin 3
RGD ID: 12576517
Description: ENCODES a protein that exhibits cadherin binding (ortholog); cytoskeletal protein binding (ortholog); phosphorylation-dependent protein binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); axon development (ortholog); axon guidance (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Autosomal Dominant Intellectual Developmental Disorder 70 (ortholog); autosomal recessive intellectual developmental disorder 37 (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); basal plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721368,578,618 - 68,890,049 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366142,664,594 - 2,976,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterograde axonal transport  (ISO)
axon development  (ISO)
axon guidance  (ISO)
axonogenesis  (ISO)
cellular response to magnesium ion  (ISO)
clustering of voltage-gated sodium channels  (ISO)
establishment of protein localization  (ISO)
establishment or maintenance of microtubule cytoskeleton polarity  (ISO)
Golgi to plasma membrane protein transport  (ISO)
magnesium ion homeostasis  (ISO)
maintenance of protein location in cell  (ISO)
maintenance of protein location in plasma membrane  (ISO)
membrane assembly  (ISO)
mitotic cytokinesis  (ISO)
negative regulation of delayed rectifier potassium channel activity  (ISO)
negative regulation of endocytosis  (ISO)
neuromuscular junction development  (ISO)
neuronal action potential  (ISO)
plasma membrane organization  (ISO)
positive regulation of cation channel activity  (ISO)
positive regulation of cell communication by electrical coupling  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of homotypic cell-cell adhesion  (ISO)
positive regulation of membrane depolarization during cardiac muscle cell action potential  (ISO)
positive regulation of membrane potential  (ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (ISO)
positive regulation of protein targeting to membrane  (ISO)
positive regulation of sodium ion import across plasma membrane  (ISO)
positive regulation of sodium ion transmembrane transporter activity  (ISO)
positive regulation of sodium ion transport  (ISO)
protein localization to axon  (ISO)
protein localization to plasma membrane  (ISO)
regulation of modification of postsynaptic structure  (ISO)
regulation of potassium ion transport  (ISO)
regulation of protein targeting  (ISO)
response to immobilization stress  (ISO)
synapse organization  (ISO)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ank3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721368,578,618 - 68,890,049 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366142,664,594 - 2,976,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381060,026,298 - 60,733,528 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1060,026,298 - 60,733,490 (-)EnsemblGRCh38hg38GRCh38
GRCh371061,786,056 - 62,493,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361061,458,165 - 61,819,494 (-)NCBINCBI36Build 36hg18NCBI36
Build 341061,458,164 - 61,819,494NCBI
Celera1055,053,717 - 55,415,045 (-)NCBICelera
Cytogenetic Map10q21.2NCBI
HuRef1055,773,261 - 56,482,641 (-)NCBIHuRef
CHM1_11062,067,860 - 62,775,531 (-)NCBICHM1_1
T2T-CHM13v2.01060,881,045 - 61,590,258 (-)NCBIT2T-CHM13v2.0
Ank3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391069,234,608 - 69,863,266 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1069,234,603 - 69,863,268 (+)EnsemblGRCm39 Ensembl
GRCm381069,533,486 - 70,027,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1069,398,773 - 70,027,438 (+)EnsemblGRCm38mm10GRCm38
MGSCv371068,996,456 - 69,490,184 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361068,929,206 - 69,420,423 (+)NCBIMGSCv36mm8
Celera1070,624,257 - 71,118,490 (+)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.1NCBI
Ank3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82018,601,307 - 19,224,790 (-)NCBIGRCr8
mRatBN7.22018,602,267 - 19,225,831 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2018,602,786 - 19,086,300 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2019,329,523 - 19,814,751 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02018,684,223 - 19,167,453 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02019,157,090 - 19,642,620 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02019,948,767 - 20,480,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2020,105,047 - 20,480,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02022,087,201 - 22,609,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42019,328,684 - 19,828,196 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12019,342,749 - 19,991,423 (-)NCBI
Celera2019,989,307 - 20,463,938 (-)NCBICelera
Cytogenetic Map20p11NCBI
Ank3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542513,522,233 - 13,851,286 (-)NCBIChiLan1.0ChiLan1.0
ANK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2872,238,291 - 72,947,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11072,243,612 - 72,953,138 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01056,560,589 - 57,269,952 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11058,774,451 - 59,136,990 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1058,790,696 - 59,602,954 (-)Ensemblpanpan1.1panPan2
ANK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1412,166,275 - 12,827,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl412,167,550 - 12,827,037 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha412,363,980 - 13,033,138 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0412,429,077 - 13,092,708 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl412,429,546 - 13,092,821 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1412,405,705 - 12,731,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0412,524,697 - 13,188,432 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0412,836,070 - 13,499,460 (-)NCBIUU_Cfam_GSD_1.0
ANK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11463,416,154 - 63,809,220 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21468,392,391 - 68,782,101 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1970,549,665 - 71,253,928 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl970,893,260 - 71,254,245 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604831,446,144 - 32,148,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ank3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247913,299,287 - 3,633,631 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040273299   ⟹   XP_040129233
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721368,578,618 - 68,890,049 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040129233 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040129233   ⟸   XM_040273299


Additional Information

Database Acc Id Source(s)
NCBI Gene Ank3 ENTREZGENE