Symbol:
Rpl23a
Name:
ribosomal protein L23a
RGD ID:
12570878
Description:
ENCODES a protein that exhibits large ribosomal subunit rRNA binding (ortholog); INVOLVED IN translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Parkinson's disease (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); nucleus (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
60S ribosomal protein L23a
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 42,051,881 - 42,055,814 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936538 4,929,895 - 4,933,761 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936538 4,929,893 - 4,933,759 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Rpl23a Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 42,051,881 - 42,055,814 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936538 4,929,895 - 4,933,761 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936538 4,929,893 - 4,933,759 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
RPL23A Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 28,719,985 - 28,724,359 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 28,719,985 - 28,724,359 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 27,047,003 - 27,051,377 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 24,071,127 - 24,075,501 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 17 24,071,017 - 24,075,500 NCBI Celera 17 23,906,165 - 23,910,537 (+) NCBI Celera Cytogenetic Map 17 q11.2 NCBI HuRef 17 23,255,900 - 23,260,272 (+) NCBI HuRef CHM1_1 17 27,109,472 - 27,113,844 (+) NCBI CHM1_1 T2T-CHM13v2.0 17 29,662,794 - 29,667,166 (+) NCBI T2T-CHM13v2.0
Rpl23a Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 78,071,761 - 78,074,410 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 78,071,758 - 78,074,410 (-) Ensembl GRCm39 Ensembl GRCm38 11 78,180,935 - 78,183,584 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 78,180,932 - 78,183,584 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 77,994,437 - 77,997,086 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 77,997,130 - 77,999,738 (-) NCBI MGSCv36 mm8 Celera 11 85,680,808 - 85,683,457 (-) NCBI Celera Cytogenetic Map 11 B5 NCBI cM Map 11 46.74 NCBI
Rpl23a Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 63,574,732 - 63,577,511 (-) NCBI GRCr8 mRatBN7.2 10 63,076,660 - 63,079,346 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 63,076,066 - 63,079,346 (-) Ensembl mRatBN7.2 Ensembl mRatBN7.2 Ensembl 15 31,302,329 - 31,302,979 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 67,708,947 - 67,711,633 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 67,214,301 - 67,216,987 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 62,685,257 - 62,688,055 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 65,441,295 - 65,443,981 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 65,441,295 - 65,443,981 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 66,190,636 - 66,193,322 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 64,451,931 - 64,454,617 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 10 62,054,259 - 62,056,945 (-) NCBI Celera Cytogenetic Map 10 q25 NCBI
Rpl23a Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955481 4,433,417 - 4,437,754 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955481 4,433,367 - 4,437,838 (-) NCBI ChiLan1.0 ChiLan1.0
RPL23A Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 35,735,384 - 35,741,278 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 37,615,906 - 37,620,420 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 28,051,502 - 28,055,630 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 28,556,527 - 28,561,032 (-) NCBI panpan1.1 PanPan1.1 panPan2
LOC106558887 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 6 11,192,720 - 11,193,214 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 6 12,818,516 - 12,818,999 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 6 11,192,761 - 11,193,244 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 43,733,264 - 43,736,897 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 6 11,061,449 - 11,061,932 (+) NCBI UMICH_Zoey_3.1
RPL23A Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 44,957,142 - 44,960,735 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 44,956,851 - 44,960,737 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 46,941,786 - 46,945,674 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RPL23A
Rpl23a
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000005029 ⟹ ENSSTOP00000004510
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936538 4,929,895 - 4,933,761 (+) Ensembl
RefSeq Acc Id:
XM_005327833 ⟹ XP_005327890
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405602 42,051,881 - 42,055,814 (+) NCBI SpeTri2.0 NW_004936538 4,929,893 - 4,933,759 (+) NCBI
Sequence:
GAGTCTTCAATGAGATTTGGCACTATAAGCCCATGGGACCGGGCCTCGTAGACCCTTTTCACCAAGATGGCGCCGAAAGCTAAGAAGGAAGCTCCTGCCCCTCCCAAAGCTGAAGCCAAAGCAAAAGC
hide sequence
RefSeq Acc Id:
XP_005327890 ⟸ XM_005327833
- UniProtKB:
I3M5B9 (UniProtKB/TrEMBL), A0A287DBE5 (UniProtKB/TrEMBL)
- Sequence:
MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLI
hide sequence
Ensembl Acc Id:
ENSSTOP00000004510 ⟸ ENSSTOT00000005029
