Nrip1 (nuclear receptor interacting protein 1) - Rat Genome Database

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Gene: Nrip1 (nuclear receptor interacting protein 1) Ictidomys tridecemlineatus
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Symbol: Nrip1
Name: nuclear receptor interacting protein 1
RGD ID: 12570037
Description: ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN estrogen signaling pathway; forkhead class A signaling pathway; retinoic acid signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Breast Neoplasms (ortholog); CAKUT (ortholog); FOUND IN chromatin (inferred); cytosol (inferred); fibrillar center (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear receptor interacting protein 1, transcript variant X1; nuclear receptor interacting protein 1, transcript variant X2; nuclear receptor interacting protein 1, transcript variant X3; nuclear receptor-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,963,641 - 13,047,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,884,724 - 7,966,928 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,886,327 - 7,966,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nrip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,963,641 - 13,047,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,884,724 - 7,966,928 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,886,327 - 7,966,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,961,235 - 15,065,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,961,235 - 15,065,936 (-)EnsemblGRCh38hg38GRCh38
GRCh372116,333,556 - 16,437,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362115,255,427 - 15,262,718 (-)NCBINCBI36Build 36hg18NCBI36
Build 342115,255,426 - 15,262,718NCBI
Celera211,503,242 - 1,606,267 (-)NCBICelera
Cytogenetic Map21q11.2-q21.1NCBI
HuRef211,716,336 - 1,819,597 (-)NCBIHuRef
CHM1_12115,894,156 - 15,997,680 (-)NCBICHM1_1
T2T-CHM13v2.02113,316,424 - 13,421,206 (-)NCBIT2T-CHM13v2.0
Nrip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391676,084,291 - 76,170,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1676,084,288 - 76,170,715 (-)EnsemblGRCm39 Ensembl
GRCm381676,287,403 - 76,373,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1676,287,400 - 76,373,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv371676,291,107 - 76,373,294 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361676,173,542 - 76,255,729 (-)NCBIMGSCv36mm8
Celera1676,500,479 - 76,582,542 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.65NCBI
Nrip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81128,382,835 - 28,466,483 (-)NCBIGRCr8
mRatBN7.21114,895,843 - 14,979,490 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,895,553 - 14,981,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1123,527,899 - 23,611,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01116,258,128 - 16,341,709 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01115,408,880 - 15,492,225 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,658,225 - 14,742,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01118,314,226 - 18,397,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41115,066,443 - 15,150,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11115,066,765 - 15,073,701 (-)NCBI
Celera1114,903,115 - 14,986,820 (-)NCBICelera
Cytogenetic Map11p11NCBI
Nrip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,740,253 - 16,820,297 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,740,253 - 16,820,297 (-)NCBIChiLan1.0ChiLan1.0
NRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22211,219,287 - 11,551,964 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1216,157,599 - 6,385,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0211,565,149 - 1,801,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12115,061,717 - 15,165,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2115,065,197 - 15,068,673 (-)Ensemblpanpan1.1panPan2
NRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13111,852,330 - 11,951,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3111,855,338 - 11,932,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3111,864,268 - 11,963,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03111,877,357 - 11,977,128 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13111,849,853 - 11,949,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03111,888,557 - 11,988,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03112,284,433 - 12,384,404 (-)NCBIUU_Cfam_GSD_1.0
NRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,825,281 - 179,915,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113179,822,731 - 179,916,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213190,199,712 - 190,224,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,480,398 - 77,583,985 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl277,577,029 - 77,580,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605076,338,850 - 76,444,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247453,392,572 - 3,468,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247453,389,486 - 3,469,599 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000020376   ⟹   ENSSTOP00000019843
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365057,884,724 - 7,966,928 (-)Ensembl
RefSeq Acc Id: XM_005324309   ⟹   XP_005324366
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,047,152 (-)NCBI
SpeTri2.0NW_0049365057,886,327 - 7,966,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286948   ⟹   XP_040142882
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,045,393 (-)NCBI
RefSeq Acc Id: XM_040286949   ⟹   XP_040142883
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,045,393 (-)NCBI
RefSeq Acc Id: XM_040286950   ⟹   XP_040142884
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,045,393 (-)NCBI
RefSeq Acc Id: XM_040286952   ⟹   XP_040142886
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,045,393 (-)NCBI
RefSeq Acc Id: XM_040286953   ⟹   XP_040142887
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,045,393 (-)NCBI
RefSeq Acc Id: XM_040286954   ⟹   XP_040142888
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497112,963,641 - 13,045,393 (-)NCBI
RefSeq Acc Id: XP_005324366   ⟸   XM_005324309
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142882   ⟸   XM_040286948
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142884   ⟸   XM_040286950
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142886   ⟸   XM_040286952
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142883   ⟸   XM_040286949
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142887   ⟸   XM_040286953
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142888   ⟸   XM_040286954
- UniProtKB: I3N647 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000019843   ⟸   ENSSTOT00000020376
Protein Domains
Nuclear receptor-interacting protein 1 repression


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020623 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020376.2 UniProtKB/TrEMBL
InterPro NRIP1 UniProtKB/TrEMBL
  NRIP1_RD1 UniProtKB/TrEMBL
  NRIP1_RD2 UniProtKB/TrEMBL
  NRIP1_RD3 UniProtKB/TrEMBL
  NRIP1_RD4 UniProtKB/TrEMBL
NCBI Gene Nrip1 ENTREZGENE
PANTHER NUCLEAR RECEPTOR-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15088 UniProtKB/TrEMBL
Pfam NRIP1_repr_1 UniProtKB/TrEMBL
  NRIP1_repr_2 UniProtKB/TrEMBL
  NRIP1_repr_3 UniProtKB/TrEMBL
  NRIP1_repr_4 UniProtKB/TrEMBL
UniProt I3N647 ENTREZGENE, UniProtKB/TrEMBL