Nrip1 (nuclear receptor interacting protein 1) - Rat Genome Database

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Gene: Nrip1 (nuclear receptor interacting protein 1) Chinchilla lanigera
Analyze
Symbol: Nrip1
Name: nuclear receptor interacting protein 1
RGD ID: 8718383
Description: ENCODES a protein that exhibits histone deacetylase binding (ortholog); nuclear estrogen receptor binding (ortholog); nuclear glucocorticoid receptor binding (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); PARTICIPATES IN estrogen signaling pathway; forkhead class A signaling pathway; retinoic acid signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Breast Neoplasms (ortholog); CAKUT (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); fibrillar center (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear receptor-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,740,253 - 16,820,297 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,740,253 - 16,820,297 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nrip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,740,253 - 16,820,297 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,740,253 - 16,820,297 (-)NCBIChiLan1.0ChiLan1.0
NRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,961,235 - 15,065,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,961,235 - 15,065,936 (-)EnsemblGRCh38hg38GRCh38
GRCh372116,333,556 - 16,437,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362115,255,427 - 15,262,718 (-)NCBINCBI36Build 36hg18NCBI36
Build 342115,255,426 - 15,262,718NCBI
Celera211,503,242 - 1,606,267 (-)NCBICelera
Cytogenetic Map21q11.2-q21.1NCBI
HuRef211,716,336 - 1,819,597 (-)NCBIHuRef
CHM1_12115,894,156 - 15,997,680 (-)NCBICHM1_1
T2T-CHM13v2.02113,316,424 - 13,421,206 (-)NCBIT2T-CHM13v2.0
Nrip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391676,084,291 - 76,170,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1676,084,288 - 76,170,715 (-)EnsemblGRCm39 Ensembl
GRCm381676,287,403 - 76,373,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1676,287,400 - 76,373,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv371676,291,107 - 76,373,294 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361676,173,542 - 76,255,729 (-)NCBIMGSCv36mm8
Celera1676,500,479 - 76,582,542 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.65NCBI
Nrip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81128,382,835 - 28,466,483 (-)NCBIGRCr8
mRatBN7.21114,895,843 - 14,979,490 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,895,553 - 14,981,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1123,527,899 - 23,611,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01116,258,128 - 16,341,709 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01115,408,880 - 15,492,225 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,658,225 - 14,742,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01118,314,226 - 18,397,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41115,066,443 - 15,150,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11115,066,765 - 15,073,701 (-)NCBI
Celera1114,903,115 - 14,986,820 (-)NCBICelera
Cytogenetic Map11p11NCBI
NRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22211,219,287 - 11,551,964 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1216,157,599 - 6,385,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0211,565,149 - 1,801,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12115,061,717 - 15,165,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2115,065,197 - 15,068,673 (-)Ensemblpanpan1.1panPan2
NRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13111,852,330 - 11,951,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3111,855,338 - 11,932,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3111,864,268 - 11,963,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03111,877,357 - 11,977,128 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13111,849,853 - 11,949,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03111,888,557 - 11,988,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03112,284,433 - 12,384,404 (-)NCBIUU_Cfam_GSD_1.0
Nrip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,963,641 - 13,047,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,884,724 - 7,966,928 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,886,327 - 7,966,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,825,281 - 179,915,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113179,822,731 - 179,916,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213190,199,712 - 190,224,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,480,398 - 77,583,985 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl277,577,029 - 77,580,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605076,338,850 - 76,444,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247453,392,572 - 3,468,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247453,389,486 - 3,469,599 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007153   ⟹   ENSCLAP00000007041
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540716,740,253 - 16,820,297 (-)Ensembl
RefSeq Acc Id: XM_005375568   ⟹   XP_005375625
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540716,740,253 - 16,820,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375569   ⟹   XP_005375626
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540716,740,253 - 16,818,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375570   ⟹   XP_005375627
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540716,740,253 - 16,815,756 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375625 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375626 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375627 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007041
  ENSCLAP00000007041.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375625   ⟸   XM_005375568
- UniProtKB: A0A8C2UX09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375626   ⟸   XM_005375569
- UniProtKB: A0A8C2UX09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375627   ⟸   XM_005375570
- UniProtKB: A0A8C2UX09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007041   ⟸   ENSCLAT00000007153
Protein Domains
Nuclear receptor-interacting protein 1 repression


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004956 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007153 ENTREZGENE
  ENSCLAT00000007153.1 UniProtKB/TrEMBL
InterPro NRIP1 UniProtKB/TrEMBL
  NRIP1_RD1 UniProtKB/TrEMBL
  NRIP1_RD2 UniProtKB/TrEMBL
  NRIP1_RD3 UniProtKB/TrEMBL
  NRIP1_RD4 UniProtKB/TrEMBL
NCBI Gene Nrip1 ENTREZGENE
PANTHER NUCLEAR RECEPTOR-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15088 UniProtKB/TrEMBL
Pfam NRIP1_repr_1 UniProtKB/TrEMBL
  NRIP1_repr_2 UniProtKB/TrEMBL
  NRIP1_repr_3 UniProtKB/TrEMBL
  NRIP1_repr_4 UniProtKB/TrEMBL
UniProt A0A8C2UX09 ENTREZGENE, UniProtKB/TrEMBL