Nrip1 (nuclear receptor interacting protein 1) - Rat Genome Database

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Gene: Nrip1 (nuclear receptor interacting protein 1) Rattus norvegicus
Analyze
Symbol: Nrip1
Name: nuclear receptor interacting protein 1
RGD ID: 1311850
Description: Enables nuclear estrogen receptor binding activity. Predicted to be involved in several processes, including cellular response to estradiol stimulus; ovarian follicle rupture; and regulation of gene expression. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in chromatin; cytosol; and nuclear lumen. Predicted to be part of histone deacetylase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in CAKUT and osteoporosis. Orthologous to human NRIP1 (nuclear receptor interacting protein 1); PARTICIPATES IN estrogen signaling pathway; forkhead class A signaling pathway; retinoic acid signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304157; nuclear receptor-interacting protein 1; receptor-interacting protein 140; RIP140
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81128,382,835 - 28,466,483 (-)NCBIGRCr8
mRatBN7.21114,895,843 - 14,979,490 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,895,553 - 14,981,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1123,527,899 - 23,611,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01116,258,128 - 16,341,709 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01115,408,880 - 15,492,225 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,658,225 - 14,742,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01118,314,226 - 18,397,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41115,066,443 - 15,150,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11115,066,765 - 15,073,701 (-)NCBI
Celera1114,903,115 - 14,986,820 (-)NCBICelera
Cytogenetic Map11p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-Hydroxypyrene  (ISO)
1-naphthol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxybenzoic acid (3,3,5-trimethylcyclohexyl) ester  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
9-phenanthrol  (ISO)
acetazolamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[ghi]perylene  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
choline  (ISO)
clofibrate  (ISO)
clorgyline  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
curcumin  (ISO)
cyclosporin A  (ISO)
cyproterone acetate  (ISO)
daidzein  (ISO)
deguelin  (ISO)
Di-n-octyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
estrone  (ISO)
etoposide  (ISO)
flusilazole  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glycitein  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
GW 1929  (ISO)
GW 3965  (ISO)
hexestrol  (ISO)
hydrogen cyanide  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (EXP)
methyltestosterone  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
N-nitrosodiethylamine  (ISO)
ormeloxifene  (EXP)
oxaliplatin  (EXP)
oxybenzone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paxilline  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
pyridoxal 5'-phosphate  (ISO)
resveratrol  (EXP,ISO)
rotenone  (EXP)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
teniposide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Expression of estrogen receptor co-regulators SRC-1, RIP140 and NCoR and their interaction with estrogen receptor in rat uterus, under the influence of ormeloxifene. Daverey A, etal., J Steroid Biochem Mol Biol. 2009 Aug;116(1-2):93-101. Epub 2009 May 19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
5. Estrogen-related genes and postmenopausal osteoporosis risk. Mendoza N, etal., Climacteric. 2012 Dec;15(6):587-93. doi: 10.3109/13697137.2012.656160. Epub 2012 Feb 15.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Multilocus analysis of estrogen-related genes in Spanish postmenopausal women suggests an interactive role of ESR1, ESR2 and NRIP1 genes in the pathogenesis of osteoporosis. Moron FJ, etal., Bone. 2006 Jul;39(1):213-21. Epub 2006 Mar 10.
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs). Rochette-Egly C and Germain P, Nucl Recept Signal. 2009 May 8;7:e005.
Additional References at PubMed
PMID:7641693   PMID:9774688   PMID:10364267   PMID:10531331   PMID:11006275   PMID:11100122   PMID:11266503   PMID:11278635   PMID:11518808   PMID:12773562   PMID:15001550   PMID:15155905  
PMID:15831516   PMID:15879431   PMID:15919748   PMID:19318515   PMID:19796622   PMID:20680503   PMID:21628546   PMID:21700896   PMID:22503866   PMID:22923231   PMID:23071095   PMID:24823858  
PMID:27614093   PMID:27639592  


Genomics

Comparative Map Data
Nrip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81128,382,835 - 28,466,483 (-)NCBIGRCr8
mRatBN7.21114,895,843 - 14,979,490 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,895,553 - 14,981,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1123,527,899 - 23,611,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01116,258,128 - 16,341,709 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01115,408,880 - 15,492,225 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,658,225 - 14,742,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01118,314,226 - 18,397,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41115,066,443 - 15,150,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11115,066,765 - 15,073,701 (-)NCBI
Celera1114,903,115 - 14,986,820 (-)NCBICelera
Cytogenetic Map11p11NCBI
NRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,961,235 - 15,065,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,961,235 - 15,065,936 (-)EnsemblGRCh38hg38GRCh38
GRCh372116,333,556 - 16,437,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362115,255,427 - 15,262,718 (-)NCBINCBI36Build 36hg18NCBI36
Build 342115,255,426 - 15,262,718NCBI
Celera211,503,242 - 1,606,267 (-)NCBICelera
Cytogenetic Map21q11.2-q21.1NCBI
HuRef211,716,336 - 1,819,597 (-)NCBIHuRef
CHM1_12115,894,156 - 15,997,680 (-)NCBICHM1_1
T2T-CHM13v2.02113,316,424 - 13,421,206 (-)NCBIT2T-CHM13v2.0
Nrip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391676,084,291 - 76,170,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1676,084,288 - 76,170,715 (-)EnsemblGRCm39 Ensembl
GRCm381676,287,403 - 76,373,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1676,287,400 - 76,373,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv371676,291,107 - 76,373,294 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361676,173,542 - 76,255,729 (-)NCBIMGSCv36mm8
Celera1676,500,479 - 76,582,542 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.65NCBI
Nrip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,740,253 - 16,820,297 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,740,253 - 16,820,297 (-)NCBIChiLan1.0ChiLan1.0
NRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22211,219,287 - 11,551,964 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1216,157,599 - 6,385,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0211,565,149 - 1,801,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12115,061,717 - 15,165,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2115,065,197 - 15,068,673 (-)Ensemblpanpan1.1panPan2
NRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13111,852,330 - 11,951,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3111,855,338 - 11,932,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3111,864,268 - 11,963,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03111,877,357 - 11,977,128 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13111,849,853 - 11,949,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03111,888,557 - 11,988,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03112,284,433 - 12,384,404 (-)NCBIUU_Cfam_GSD_1.0
Nrip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,963,641 - 13,047,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,884,724 - 7,966,928 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,886,327 - 7,966,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,825,281 - 179,915,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113179,822,731 - 179,916,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213190,199,712 - 190,224,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,480,398 - 77,583,985 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl277,577,029 - 77,580,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605076,338,850 - 76,444,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247453,392,572 - 3,468,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247453,389,486 - 3,469,599 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nrip1
397 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:524
Count of miRNA genes:263
Interacting mature miRNAs:360
Transcripts:ENSRNOT00000002152
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat

Markers in Region
Nrip1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21114,901,084 - 14,901,334 (+)MAPPERmRatBN7.2
Rnor_6.01114,663,467 - 14,663,716NCBIRnor6.0
Rnor_5.01118,319,468 - 18,319,717UniSTSRnor5.0
RGSC_v3.41115,071,685 - 15,071,934UniSTSRGSC3.4
Celera1114,908,357 - 14,908,606UniSTS
Cytogenetic Map11q11UniSTS
RH133591  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21114,895,948 - 14,896,143 (+)MAPPERmRatBN7.2
Rnor_6.01114,658,331 - 14,658,525NCBIRnor6.0
Rnor_5.01118,314,332 - 18,314,526UniSTSRnor5.0
RGSC_v3.41115,066,549 - 15,066,743UniSTSRGSC3.4
Celera1114,903,221 - 14,903,415UniSTS
Cytogenetic Map11q11UniSTS
BI302296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21114,977,240 - 14,977,394 (+)MAPPERmRatBN7.2
Rnor_6.01114,739,384 - 14,739,537NCBIRnor6.0
Rnor_5.01118,395,385 - 18,395,538UniSTSRnor5.0
RGSC_v3.41115,147,958 - 15,148,111UniSTSRGSC3.4
Celera1114,984,641 - 14,984,794UniSTS
Cytogenetic Map11q11UniSTS
AF053062  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21114,899,235 - 14,899,314 (+)MAPPERmRatBN7.2
Rnor_6.01114,661,618 - 14,661,696NCBIRnor6.0
Rnor_5.01118,317,619 - 18,317,697UniSTSRnor5.0
RGSC_v3.41115,069,836 - 15,069,914UniSTSRGSC3.4
Celera1114,906,508 - 14,906,586UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000002152   ⟹   ENSRNOP00000002152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,773 - 14,980,299 (-)Ensembl
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094986   ⟹   ENSRNOP00000092566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,553 - 14,979,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101761   ⟹   ENSRNOP00000080753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,896,969 - 14,955,842 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102333   ⟹   ENSRNOP00000089206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,850 - 14,961,276 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103187   ⟹   ENSRNOP00000077848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,852 - 14,909,878 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104866   ⟹   ENSRNOP00000094016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,553 - 14,981,761 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108596   ⟹   ENSRNOP00000087999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,852 - 14,943,252 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114589   ⟹   ENSRNOP00000077794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,773 - 14,933,989 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118675   ⟹   ENSRNOP00000077049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1114,895,553 - 14,961,276 (-)Ensembl
RefSeq Acc Id: NM_001100560   ⟹   NP_001094030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81128,382,835 - 28,466,412 (-)NCBI
mRatBN7.21114,895,843 - 14,979,421 (-)NCBI
Rnor_6.01114,658,225 - 14,741,563 (-)NCBI
Rnor_5.01118,314,226 - 18,397,564 (-)NCBI
RGSC_v3.41115,066,443 - 15,150,137 (-)RGD
Celera1114,903,115 - 14,986,820 (-)RGD
Sequence:
RefSeq Acc Id: XM_039088446   ⟹   XP_038944374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81128,382,835 - 28,466,483 (-)NCBI
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088447   ⟹   XP_038944375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81128,382,835 - 28,466,483 (-)NCBI
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088448   ⟹   XP_038944376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81128,382,835 - 28,466,483 (-)NCBI
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088449   ⟹   XP_038944377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81128,382,835 - 28,466,483 (-)NCBI
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_063270607   ⟹   XP_063126677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81128,382,835 - 28,395,184 (-)NCBI
RefSeq Acc Id: NP_001094030   ⟸   NM_001100560
- UniProtKB: G3V672 (UniProtKB/TrEMBL),   A6JL20 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002152   ⟸   ENSRNOT00000002152
RefSeq Acc Id: XP_038944377   ⟸   XM_039088449
- Peptide Label: isoform X1
- UniProtKB: G3V672 (UniProtKB/TrEMBL),   A6JL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944375   ⟸   XM_039088447
- Peptide Label: isoform X1
- UniProtKB: G3V672 (UniProtKB/TrEMBL),   A6JL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944374   ⟸   XM_039088446
- Peptide Label: isoform X1
- UniProtKB: G3V672 (UniProtKB/TrEMBL),   A6JL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944376   ⟸   XM_039088448
- Peptide Label: isoform X1
- UniProtKB: G3V672 (UniProtKB/TrEMBL),   A6JL20 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094016   ⟸   ENSRNOT00000104866
Ensembl Acc Id: ENSRNOP00000092566   ⟸   ENSRNOT00000094986
Ensembl Acc Id: ENSRNOP00000087999   ⟸   ENSRNOT00000108596
Ensembl Acc Id: ENSRNOP00000077049   ⟸   ENSRNOT00000118675
Ensembl Acc Id: ENSRNOP00000077848   ⟸   ENSRNOT00000103187
Ensembl Acc Id: ENSRNOP00000077794   ⟸   ENSRNOT00000114589
Ensembl Acc Id: ENSRNOP00000089206   ⟸   ENSRNOT00000102333
Ensembl Acc Id: ENSRNOP00000080753   ⟸   ENSRNOT00000101761
RefSeq Acc Id: XP_063126677   ⟸   XM_063270607
- Peptide Label: isoform X1
- UniProtKB: A6JL20 (UniProtKB/TrEMBL),   G3V672 (UniProtKB/TrEMBL)
Protein Domains
Nuclear receptor-interacting protein 1 repression

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V672-F1-model_v2 AlphaFold G3V672 1-1162 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698006
Promoter ID:EPDNEW_R8531
Type:initiation region
Name:Nrip1_1
Description:nuclear receptor interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,741,563 - 14,741,623EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311850 AgrOrtholog
BioCyc Gene G2FUF-22214 BioCyc
Ensembl Genes ENSRNOG00000001585 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002152.4 UniProtKB/TrEMBL
  ENSRNOT00000094986.1 UniProtKB/TrEMBL
  ENSRNOT00000101761.1 UniProtKB/TrEMBL
  ENSRNOT00000102333.1 UniProtKB/TrEMBL
  ENSRNOT00000103187.1 UniProtKB/TrEMBL
  ENSRNOT00000104866.1 UniProtKB/TrEMBL
  ENSRNOT00000108596.1 UniProtKB/TrEMBL
  ENSRNOT00000114589.1 UniProtKB/TrEMBL
  ENSRNOT00000118675.1 UniProtKB/TrEMBL
InterPro NRIP1 UniProtKB/TrEMBL
  NRIP1_RD1 UniProtKB/TrEMBL
  NRIP1_RD2 UniProtKB/TrEMBL
  NRIP1_RD3 UniProtKB/TrEMBL
  NRIP1_RD4 UniProtKB/TrEMBL
KEGG Report rno:304157 UniProtKB/TrEMBL
NCBI Gene 304157 ENTREZGENE
PANTHER NUCLEAR RECEPTOR-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15088 UniProtKB/TrEMBL
Pfam NRIP1_repr_1 UniProtKB/TrEMBL
  NRIP1_repr_2 UniProtKB/TrEMBL
  NRIP1_repr_3 UniProtKB/TrEMBL
  NRIP1_repr_4 UniProtKB/TrEMBL
PhenoGen Nrip1 PhenoGen
RatGTEx ENSRNOG00000001585 RatGTEx
UniProt A6JL20 ENTREZGENE, UniProtKB/TrEMBL
  G3V672 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nrip1  nuclear receptor interacting protein 1   Nrip1_predicted  nuclear receptor interacting protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nrip1_predicted  nuclear receptor interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED