Nrip1 (nuclear receptor interacting protein 1) - Rat Genome Database
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Gene: Nrip1 (nuclear receptor interacting protein 1) Rattus norvegicus
Analyze
Symbol: Nrip1
Name: nuclear receptor interacting protein 1
RGD ID: 1311850
Description: Exhibits estrogen receptor binding activity. Predicted to be involved in several processes, including cellular response to estradiol stimulus; circadian regulation of gene expression; and regulation of transcription by RNA polymerase II. Predicted to localize to chromatin; cytosol; and nuclear lumen. Human ortholog(s) of this gene implicated in CAKUT and osteoporosis. Orthologous to human NRIP1 (nuclear receptor interacting protein 1); PARTICIPATES IN estrogen signaling pathway; forkhead class A signaling pathway; retinoic acid signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC304157; nuclear receptor-interacting protein 1; receptor-interacting protein 140; RIP140
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01114,658,225 - 14,742,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01118,314,226 - 18,397,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41115,066,443 - 15,150,137 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11115,066,765 - 15,073,701 (-)NCBI
Celera1114,903,115 - 14,986,820 (-)NCBICelera
Cytogenetic Map11p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-Hydroxypyrene  (ISO)
1-naphthol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
9-phenanthrol  (ISO)
acetazolamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
calcitriol  (ISO)
choline  (ISO)
clofibrate  (ISO)
clorgyline  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cyproterone acetate  (ISO)
daidzein  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
estrone  (ISO)
etoposide  (ISO)
flusilazole  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
genistein  (ISO)
glycitein  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
GW 1929  (ISO)
GW 3965  (ISO)
hexestrol  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (EXP)
methyltestosterone  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
N-nitrosodiethylamine  (ISO)
ormeloxifene  (EXP)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
Paxilline  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pyridoxal 5'-phosphate  (ISO)
resveratrol  (EXP,ISO)
rotenone  (EXP)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
teniposide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zearalenone  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7641693   PMID:9774688   PMID:10364267   PMID:10531331   PMID:11006275   PMID:11100122   PMID:11266503   PMID:11278635   PMID:11518808   PMID:12773562   PMID:15001550   PMID:15155905  
PMID:15831516   PMID:15879431   PMID:15919748   PMID:19318515   PMID:19796622   PMID:20680503   PMID:21628546   PMID:21700896   PMID:22503866   PMID:22923231   PMID:23071095   PMID:24823858  
PMID:27614093   PMID:27639592  


Genomics

Comparative Map Data
Nrip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01114,658,225 - 14,742,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01118,314,226 - 18,397,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41115,066,443 - 15,150,137 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11115,066,765 - 15,073,701 (-)NCBI
Celera1114,903,115 - 14,986,820 (-)NCBICelera
Cytogenetic Map11p11NCBI
NRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2114,961,235 - 15,065,936 (-)EnsemblGRCh38hg38GRCh38
GRCh382114,961,235 - 15,065,903 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372116,333,556 - 16,437,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362115,255,427 - 15,262,718 (-)NCBINCBI36hg18NCBI36
Build 342115,255,426 - 15,262,718NCBI
Celera211,503,242 - 1,606,267 (-)NCBI
Cytogenetic Map21q11.2-q21.1NCBI
HuRef211,716,336 - 1,819,597 (-)NCBIHuRef
CHM1_12115,894,156 - 15,997,680 (-)NCBICHM1_1
Nrip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391676,084,291 - 76,170,930 (-)NCBIGRCm39mm39
GRCm39 Ensembl1676,084,288 - 76,170,715 (-)Ensembl
GRCm381676,287,403 - 76,373,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1676,287,400 - 76,373,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv371676,291,107 - 76,373,294 (-)NCBIGRCm37mm9NCBIm37
MGSCv361676,173,542 - 76,255,729 (-)NCBImm8
Celera1676,500,479 - 76,582,542 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
Nrip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,740,253 - 16,820,297 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,740,253 - 16,820,297 (-)NCBIChiLan1.0ChiLan1.0
NRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12115,061,717 - 15,165,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2115,065,197 - 15,068,673 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0211,565,149 - 1,801,358 (-)NCBIMhudiblu_PPA_v0panPan3
NRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3111,855,338 - 11,932,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13111,852,330 - 11,951,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nrip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365057,886,327 - 7,966,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,824,862 - 179,915,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113179,822,731 - 179,916,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213190,199,712 - 190,224,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRIP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,480,398 - 77,583,985 (+)NCBI
ChlSab1.1 Ensembl277,577,029 - 77,580,496 (+)Ensembl
Nrip1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247453,389,486 - 3,469,599 (-)NCBI

Position Markers
Nrip1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01114,663,467 - 14,663,716NCBIRnor6.0
Rnor_5.01118,319,468 - 18,319,717UniSTSRnor5.0
RGSC_v3.41115,071,685 - 15,071,934UniSTSRGSC3.4
Celera1114,908,357 - 14,908,606UniSTS
Cytogenetic Map11q11UniSTS
RH133591  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01114,658,331 - 14,658,525NCBIRnor6.0
Rnor_5.01118,314,332 - 18,314,526UniSTSRnor5.0
RGSC_v3.41115,066,549 - 15,066,743UniSTSRGSC3.4
Celera1114,903,221 - 14,903,415UniSTS
Cytogenetic Map11q11UniSTS
BI302296  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01114,739,384 - 14,739,537NCBIRnor6.0
Rnor_5.01118,395,385 - 18,395,538UniSTSRnor5.0
RGSC_v3.41115,147,958 - 15,148,111UniSTSRGSC3.4
Celera1114,984,641 - 14,984,794UniSTS
Cytogenetic Map11q11UniSTS
AF053062  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01114,661,618 - 14,661,696NCBIRnor6.0
Rnor_5.01118,317,619 - 18,317,697UniSTSRnor5.0
RGSC_v3.41115,069,836 - 15,069,914UniSTSRGSC3.4
Celera1114,906,508 - 14,906,586UniSTS
Cytogenetic Map11q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11133867429Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11172720192Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)1132503169342559Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11935127454351274Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111136730644444347Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:524
Count of miRNA genes:263
Interacting mature miRNAs:360
Transcripts:ENSRNOT00000002152
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 12 19 12 8 8 70 34 34 11 8
Low 43 29 29 29 3 4 1 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002152   ⟹   ENSRNOP00000002152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1114,658,225 - 14,741,563 (-)Ensembl
RefSeq Acc Id: NM_001100560   ⟹   NP_001094030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21114,895,843 - 14,979,421 (-)NCBI
Rnor_6.01114,658,225 - 14,741,563 (-)NCBI
Rnor_5.01118,314,226 - 18,397,564 (-)NCBI
RGSC_v3.41115,066,443 - 15,150,137 (-)RGD
Celera1114,903,115 - 14,986,820 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598019   ⟹   XP_017453508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,658,225 - 14,723,527 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598020   ⟹   XP_017453509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,658,225 - 14,742,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598021   ⟹   XP_017453510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,658,225 - 14,667,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088446   ⟹   XP_038944374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088447   ⟹   XP_038944375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088448   ⟹   XP_038944376
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088449   ⟹   XP_038944377
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21114,895,843 - 14,979,490 (-)NCBI
RefSeq Acc Id: XM_039088450   ⟹   XP_038944378
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21114,895,843 - 14,908,189 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001094030   ⟸   NM_001100560
- UniProtKB: G3V672 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453509   ⟸   XM_017598020
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453508   ⟸   XM_017598019
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453510   ⟸   XM_017598021
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000002152   ⟸   ENSRNOT00000002152
RefSeq Acc Id: XP_038944377   ⟸   XM_039088449
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944375   ⟸   XM_039088447
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944374   ⟸   XM_039088446
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944376   ⟸   XM_039088448
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944378   ⟸   XM_039088450
- Peptide Label: isoform X1
Protein Domains
NRIP1_repr_1   NRIP1_repr_2   NRIP1_repr_4

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698006
Promoter ID:EPDNEW_R8531
Type:initiation region
Name:Nrip1_1
Description:nuclear receptor interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,741,563 - 14,741,623EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311850 AgrOrtholog
Ensembl Genes ENSRNOG00000001585 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002152 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002152 ENTREZGENE, UniProtKB/TrEMBL
InterPro NRIP1 UniProtKB/TrEMBL
  NRIP1_RD1 UniProtKB/TrEMBL
  NRIP1_RD2 UniProtKB/TrEMBL
  NRIP1_RD3 UniProtKB/TrEMBL
  NRIP1_RD4 UniProtKB/TrEMBL
KEGG Report rno:304157 UniProtKB/TrEMBL
NCBI Gene 304157 ENTREZGENE
PANTHER PTHR15088 UniProtKB/TrEMBL
Pfam NRIP1_repr_1 UniProtKB/TrEMBL
  NRIP1_repr_2 UniProtKB/TrEMBL
  NRIP1_repr_3 UniProtKB/TrEMBL
  NRIP1_repr_4 UniProtKB/TrEMBL
PhenoGen Nrip1 PhenoGen
UniProt G3V672 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nrip1  nuclear receptor interacting protein 1   Nrip1_predicted  nuclear receptor interacting protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nrip1_predicted  nuclear receptor interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED