Nog (noggin) - Rat Genome Database

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Gene: Nog (noggin) Ictidomys tridecemlineatus
Analyze
Symbol: Nog
Name: noggin
RGD ID: 12531258
Description: ENCODES a protein that exhibits growth factor binding (ortholog); protein-containing complex binding (ortholog); receptor ligand inhibitor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cellular response to BMP stimulus (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH acute kidney tubular necrosis (ortholog); Alzheimer's disease (ortholog); brachydactyly type B2 (ortholog); FOUND IN axon (ortholog); extracellular space (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560230,811,040 - 30,812,486 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364906,262,785 - 6,263,483 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364906,262,651 - 6,264,069 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 24 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelacute kidney tubular necrosis  ISONog (Rattus norvegicus)9068941associated with Kidney Reperfusion InjuryRGDPMID:16284088 and REF_RGD_ID:1601494
NogSquirrelAlzheimer's disease  ISONog (Mus musculus)9068941 RGDPMID:19463786 and REF_RGD_ID:10414082
NogSquirrelbrachydactyly type B2 no_associationISONOG (Homo sapiens)9068941DNA:mutation:cds:p.G92E(human)RGDPMID:22529972 and REF_RGD_ID:12801483
NogSquirrelcleft lip susceptibilityISONOG (Homo sapiens)9068941DNA:SNP: : rs227727 (human)RGDPMID:25704602 and REF_RGD_ID:11251786
NogSquirrelcleft lip susceptibilityISONOG (Homo sapiens)9068941DNA:SNP: :rs227731(human)RGDPMID:25339627 and REF_RGD_ID:12801482
NogSquirrelConductive Hearing Loss  ISONog (Mus musculus)9068941 RGDPMID:18096605 and REF_RGD_ID:12801451
NogSquirrelCOVID-19  ISONOG (Homo sapiens)9068941mRNA:decreased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
NogSquirrelcraniosynostosis treatmentISONOG (Homo sapiens)9068941 RGDPMID:19627528 and REF_RGD_ID:8547554
NogSquirrelesophageal atresia/tracheoesophageal fistula  ISONog (Mus musculus)9068941 RGDPMID:17260385 and REF_RGD_ID:12801454
NogSquirrelHuntington's disease treatmentISONOG (Homo sapiens)9068941 RGDPMID:17885687 and REF_RGD_ID:10415531
NogSquirrelhyperopia  ISONOG (Homo sapiens)9068941associated with Multiple Synostoses Syndrome 1 and DNA:mutation:cds:1426G>C (P.W205C)(Human)RGDPMID:16151340 and REF_RGD_ID:12801467
NogSquirrelMicrognathism  ISONOG (Homo sapiens)9068941DNA:SNP:rs1348322(human) RGDPMID:20645637 and REF_RGD_ID:12801465
NogSquirrelosteoporosis  ISONog (Mus musculus)9068941 RGDPMID:12975477 and REF_RGD_ID:10414323
NogSquirrelPeripheral Nerve Injuries treatmentISONog (Mus musculus)9068941 RGDPMID:17258709 and REF_RGD_ID:10428775
NogSquirrelprolactinoma  ISONog (Mus musculus)9068941mRNA and protein:decreased expression:pituitaryRGDPMID:12552124 and REF_RGD_ID:629544
NogSquirrelproximal symphalangism  ISONOG (Homo sapiens)9068941DNA:missense mutation:cds:c.499C>T(p.R167C)humanRGDPMID:24326127 and REF_RGD_ID:12801479
NogSquirrelproximal symphalangism  ISONOG (Homo sapiens)9068941 RGDPMID:10080184 and REF_RGD_ID:1600234
NogSquirrelproximal symphalangism  ISONOG (Homo sapiens)9068941DNA:mutations:cds:g.551G>A (p.C184Y) more ...RGDPMID:11846737 and REF_RGD_ID:12801455
NogSquirrelPulmonary Hypertension, Hypoxia-Induced  ISONog (Rattus norvegicus)9068941mRNA and protein:decreased expression:lung:RGDPMID:25740156 and REF_RGD_ID:12801489
NogSquirrelrelapsing-remitting multiple sclerosis  ISONOG (Homo sapiens)9068941mRNA and protein:decreased expression:mononuclear cell"RGDPMID:21111488 and REF_RGD_ID:12801480
1 to 20 of 24 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelbrachydactyly type B2  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Brachydactyly type B2ClinVarPMID:10080184 more ...
NogSquirrelgenetic disease  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16532400 more ...
NogSquirrelhereditary breast ovarian cancer syndrome  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Breast-ovarian cancer more ...ClinVarPMID:38922859
NogSquirrelJoubert syndrome 1  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:28492532
NogSquirrelmultiple synostoses syndrome 1  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Symphalangism-brachydactyly syndromeClinVarPMID:10080184 more ...
NogSquirrelproximal symphalangism 1  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Proximal symphalangism 1AClinVarPMID:10080184 more ...
NogSquirrelStapes Ankylosis with Broad Thumbs and Toes  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Stapes ankylosis with broad thumbs and toesClinVarPMID:10069712 more ...
NogSquirreltarsal-carpal coalition syndrome  ISONOG (Homo sapiens)8554872ClinVar Annotator: match by term: Tarsal-carpal coalition syndromeClinVarPMID:10080184 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelproximal symphalangism  ISONOG (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelesophageal atresia/tracheoesophageal fistula  ISONog (Mus musculus)9068941OMIM:189960MouseDO 


Biological Process
1 to 20 of 108 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelanatomical structure formation involved in morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelatrial cardiac muscle tissue morphogenesis involved_inIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelaxial mesoderm development acts_upstream_of_or_withinIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelaxon guidance acts_upstream_of_or_withinIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelBMP signaling pathway acts_upstream_ofIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelBMP signaling pathway involved_inISONog (Mus musculus)9068941 PMID:17634368MGIPMID:17634368
NogSquirrelBMP signaling pathway involved_inISOMGI:13132689068941 PMID:12397106MGIPMID:12397106
NogSquirrelbrain development acts_upstream_of_or_withinIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelcartilage development involved_inIEAUniRule:UR000329325150520179 UniProtGO_REF:0000104
NogSquirrelcartilage development acts_upstream_ofIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelcartilage development involved_inIEAUniProtKB-KW:KW-0891150520179 UniProtGO_REF:0000043
NogSquirrelcell differentiation involved_inIEAUniProtKB-KW:KW-0221150520179 UniProtGO_REF:0000043
NogSquirrelcell differentiation in hindbrain involved_inIEAUniProtKB:Q13253 and ensembl:ENSP00000328181150520179 EnsemblGO_REF:0000107
NogSquirrelcell population proliferation involved_inIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelcellular response to BMP stimulus  ISONog (Rattus norvegicus)9068941 RGDPMID:21238590 and REF_RGD_ID:12801486
NogSquirrelcellular response to BMP stimulus acts_upstream_of_or_withinIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelcellular response to hypoxia  ISONog (Rattus norvegicus)9068941 RGDPMID:25740156 and REF_RGD_ID:12801489
NogSquirrelcentral nervous system development acts_upstream_of_or_withinIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirrelcranial skeletal system development involved_inIEAUniProtKB:P97466 and ensembl:ENSMUSP00000061427150520179 EnsemblGO_REF:0000107
NogSquirreldorsal/ventral pattern formation involved_inIEAPANTHER:PTN000051996150520179 TreeGrafterGO_REF:0000118
1 to 20 of 108 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelaxon  ISONog (Rattus norvegicus)9068941 RGDPMID:21447372 and REF_RGD_ID:12801487
NogSquirrelextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
NogSquirrelextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
NogSquirrelextracellular space located_inIEAPANTHER:PTN000051996150520179 TreeGrafterGO_REF:0000118
NogSquirrelextracellular space located_inIEAUniProtKB:P97466 more ...150520179 EnsemblGO_REF:0000107
NogSquirrelextracellular space  ISONog (Rattus norvegicus)9068941 RGDPMID:15199066 and REF_RGD_ID:1599074
NogSquirrelpresynapse located_inIEAGO:0099171150520179 GOCGO_REF:0000108
NogSquirrelprotein-containing complex  ISONog (Rattus norvegicus)9068941 RGDPMID:15199066 and REF_RGD_ID:1599074

Molecular Function
1 to 9 of 9 rows

  
1 to 9 of 9 rows

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NogSquirrelBone morphogenetic proteins signaling pathway  ISONOG (Homo sapiens)9068941 PIDPID:200144
PMID:22301074   PMID:30032202  



Nog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560230,811,040 - 30,812,486 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364906,262,785 - 6,263,483 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364906,262,651 - 6,264,069 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381756,593,699 - 56,595,611 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1756,593,699 - 56,595,611 (+)EnsemblGRCh38hg38GRCh38
GRCh371754,671,060 - 54,672,972 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,026,274 - 52,027,546 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,026,273 - 52,027,542NCBI
Celera1751,132,757 - 51,134,648 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,031,838 - 50,033,727 (+)NCBIHuRef
CHM1_11754,735,932 - 54,737,820 (+)NCBICHM1_1
T2T-CHM13v2.01757,469,821 - 57,471,732 (+)NCBIT2T-CHM13v2.0
Nog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391189,191,464 - 89,193,385 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1189,191,464 - 89,193,158 (-)EnsemblGRCm39 Ensembl
GRCm381189,300,638 - 89,302,559 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1189,300,638 - 89,302,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv371189,161,952 - 89,163,873 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361189,117,412 - 89,118,110 (-)NCBIMGSCv36mm8
Celera1198,919,523 - 98,921,373 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Nog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,625,874 - 74,627,501 (-)NCBIGRCr8
mRatBN7.21074,128,712 - 74,130,339 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1074,128,712 - 74,130,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,757,906 - 78,759,533 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01078,262,852 - 78,264,479 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,730,695 - 73,732,322 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,811,759 - 76,813,386 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,811,759 - 76,813,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01076,677,612 - 76,679,239 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,689,244 - 77,690,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,703,801 - 77,704,728 (-)NCBI
Celera1073,029,127 - 73,030,754 (-)NCBICelera
Cytogenetic Map10q26NCBI
Nog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554516,193,042 - 6,193,740 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554516,192,368 - 6,193,766 (-)NCBIChiLan1.0ChiLan1.0
NOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21972,764,735 - 72,767,331 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11777,576,197 - 77,577,597 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01750,669,186 - 50,671,081 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11755,532,208 - 55,533,782 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1755,532,394 - 55,533,092 (+)Ensemblpanpan1.1panPan2
NOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,453,604 - 31,456,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha930,695,378 - 30,696,228 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,262,855 - 32,263,712 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,262,940 - 32,263,663 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,048,413 - 31,049,269 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,332,204 - 31,333,060 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,415,982 - 31,416,833 (+)NCBIUU_Cfam_GSD_1.0
NOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1232,891,321 - 32,892,206 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11232,891,321 - 32,892,206 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NOG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,816,783 - 36,818,693 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,817,476 - 36,818,174 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,642,384 - 7,644,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nog
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479511,696,353 - 11,697,051 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479511,696,102 - 11,697,367 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005321598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000029914   ⟹   ENSSTOP00000018887
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364906,262,785 - 6,263,483 (-)Ensembl
RefSeq Acc Id: XM_005321598   ⟹   XP_005321655
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560230,811,040 - 30,812,486 (+)NCBI
SpeTri2.0NW_0049364906,262,651 - 6,264,069 (-)NCBI
Sequence:
Protein RefSeqs XP_005321655 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018887.1
GenBank Protein KAG3269317 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269318 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321655   ⟸   XM_005321598
- UniProtKB: I3N3E1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000018887   ⟸   ENSSTOT00000029914



1 to 13 of 13 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000024922 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029914.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  Noggin UniProtKB/TrEMBL
NCBI Gene Nog ENTREZGENE
PANTHER NOGGIN UniProtKB/TrEMBL
  PTHR10494 UniProtKB/TrEMBL
Pfam Noggin UniProtKB/TrEMBL
PIRSF Noggin UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt I3N3E1 ENTREZGENE, UniProtKB/TrEMBL
1 to 13 of 13 rows