SLC38A2 (solute carrier family 38 member 2) - Rat Genome Database

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Gene: SLC38A2 (solute carrier family 38 member 2) Canis lupus familiaris
Analyze
Symbol: SLC38A2
Name: solute carrier family 38 member 2
RGD ID: 12421101
Description: ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); alanine:sodium symporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import (ortholog); amino acid transport (ortholog); ASSOCIATED WITH Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); Fetal Growth Retardation (ortholog); FOUND IN axon (ortholog); brush border (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-coupled neutral amino acid transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,056,289 - 8,068,988 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,018,880 - 8,066,331 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,238,710 - 38,252,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,254,344 - 8,268,583 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,254,335 - 8,268,583 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,062,404 - 8,076,598 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,101,404 - 8,115,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,478,220 - 38,492,460 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC38A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,056,289 - 8,068,988 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,018,880 - 8,066,331 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,238,710 - 38,252,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,254,344 - 8,268,583 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,254,335 - 8,268,583 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,062,404 - 8,076,598 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,101,404 - 8,115,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,478,220 - 38,492,460 (-)NCBIUU_Cfam_GSD_1.0
SLC38A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,358,188 - 46,372,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,358,188 - 46,372,773 (-)EnsemblGRCh38hg38GRCh38
GRCh371246,751,971 - 46,766,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,038,238 - 45,052,814 (-)NCBINCBI36Build 36hg18NCBI36
Build 341245,038,238 - 45,052,814NCBI
Celera1245,549,292 - 45,563,966 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1243,783,294 - 43,797,966 (-)NCBIHuRef
CHM1_11246,717,042 - 46,731,717 (-)NCBICHM1_1
T2T-CHM13v2.01246,317,747 - 46,332,332 (-)NCBIT2T-CHM13v2.0
Slc38a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,585,267 - 96,597,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,585,273 - 96,597,611 (-)EnsemblGRCm39 Ensembl
GRCm381596,687,392 - 96,699,728 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,687,392 - 96,699,730 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,517,823 - 96,530,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,515,426 - 96,527,732 (-)NCBIMGSCv36mm8
Celera1598,833,619 - 98,845,915 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.6NCBI
Slc38a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,730,450 - 129,742,619 (-)NCBIGRCr8
mRatBN7.27127,851,267 - 127,863,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,851,267 - 127,863,436 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,652,230 - 129,664,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,877,742 - 131,889,909 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,795,866 - 131,808,034 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,088,654 - 138,100,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,088,649 - 138,100,841 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,716,131 - 137,728,346 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,365,172 - 135,377,341 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,441,608 - 135,453,778 (-)NCBI
Celera7124,355,437 - 124,367,606 (-)NCBICelera
Cytogenetic Map7q35NCBI
Slc38a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,516,039 - 5,531,758 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,517,323 - 5,530,055 (-)NCBIChiLan1.0ChiLan1.0
SLC38A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,794,056 - 47,808,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,790,814 - 47,805,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,359,637 - 42,374,251 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,230,007 - 43,244,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,230,007 - 43,244,343 (+)Ensemblpanpan1.1panPan2
Slc38a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,607,736 - 68,620,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,543,820 - 4,557,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,543,845 - 4,557,118 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,113,494 - 77,127,650 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,113,491 - 77,127,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2580,036,344 - 80,050,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,580,934 - 42,595,484 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,580,913 - 42,595,484 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037203,832,120 - 203,846,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248165,888,414 - 5,902,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248165,888,447 - 5,902,009 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC38A2
171 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005636944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000014728   ⟹   ENSCAFP00000013622
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl278,018,880 - 8,066,331 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000047987   ⟹   ENSCAFP00000042287
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl278,055,216 - 8,066,331 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000086619   ⟹   ENSCAFP00000043298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl278,056,969 - 8,066,331 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048259   ⟹   ENSCAFP00845037852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl278,254,335 - 8,268,581 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048352   ⟹   ENSCAFP00845037935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl278,254,343 - 8,268,583 (+)Ensembl
RefSeq Acc Id: XM_005636945   ⟹   XP_005637002
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,056,348 - 8,068,988 (+)NCBI
Dog10K_Boxer_Tasha2738,238,710 - 38,251,333 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038438397   ⟹   XP_038294325
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,254,344 - 8,268,583 (+)NCBI
RefSeq Acc Id: XM_038438398   ⟹   XP_038294326
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,255,947 - 8,268,583 (+)NCBI
RefSeq Acc Id: XM_038460019   ⟹   XP_038315947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2738,238,710 - 38,252,924 (-)NCBI
RefSeq Acc Id: XM_038513093   ⟹   XP_038369021
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,062,404 - 8,076,598 (+)NCBI
RefSeq Acc Id: XM_038513094   ⟹   XP_038369022
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,063,996 - 8,076,598 (+)NCBI
RefSeq Acc Id: XM_038577436   ⟹   XP_038433364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,478,220 - 38,492,460 (-)NCBI
RefSeq Acc Id: XM_038577437   ⟹   XP_038433365
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,478,220 - 38,490,864 (-)NCBI
RefSeq Acc Id: XM_038640864   ⟹   XP_038496792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,101,404 - 8,115,453 (+)NCBI
RefSeq Acc Id: XM_038640865   ⟹   XP_038496793
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,102,977 - 8,115,453 (+)NCBI
RefSeq Acc Id: XP_005637002   ⟸   XM_005636945
- Peptide Label: isoform X2
- UniProtKB: A0A8C0T6Q8 (UniProtKB/TrEMBL),   A0A8P0NBK3 (UniProtKB/TrEMBL),   A0A8C0PIM1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000013622   ⟸   ENSCAFT00000014728
Ensembl Acc Id: ENSCAFP00000043298   ⟸   ENSCAFT00000086619
Ensembl Acc Id: ENSCAFP00000042287   ⟸   ENSCAFT00000047987
RefSeq Acc Id: XP_038369021   ⟸   XM_038513093
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369022   ⟸   XM_038513094
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038496792   ⟸   XM_038640864
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038496793   ⟸   XM_038640865
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038294325   ⟸   XM_038438397
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KDZ7 (UniProtKB/TrEMBL),   A0A8I3Q1D1 (UniProtKB/TrEMBL),   A0A8C0TBV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294326   ⟸   XM_038438398
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PNK8 (UniProtKB/TrEMBL),   A0A8I3Q2J2 (UniProtKB/TrEMBL),   A0A8C0PIM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315947   ⟸   XM_038460019
- Peptide Label: isoform X1
- UniProtKB: A0A8C0T6P7 (UniProtKB/TrEMBL),   A0A8C0TBV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433364   ⟸   XM_038577436
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KDZ7 (UniProtKB/TrEMBL),   A0A8C0TBV2 (UniProtKB/TrEMBL),   A0A8I3Q1D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433365   ⟸   XM_038577437
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PIM1 (UniProtKB/TrEMBL),   A0A8C0PNK8 (UniProtKB/TrEMBL),   A0A8I3Q2J2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845037935   ⟸   ENSCAFT00845048352
Ensembl Acc Id: ENSCAFP00845037852   ⟸   ENSCAFT00845048259
Protein Domains
Amino acid transporter transmembrane

Promoters
RGD ID:13688127
Promoter ID:EPDNEW_C6195
Type:initiation region
Name:SLC38A2_1
Description:solute carrier family 38 member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,056,370 - 8,056,430EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009261 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025245 UniProtKB/TrEMBL
  ENSCAFG00040020106 UniProtKB/TrEMBL
  ENSCAFG00845027394 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014728.4 UniProtKB/TrEMBL
  ENSCAFT00030046660.1 UniProtKB/TrEMBL
  ENSCAFT00030046696.1 UniProtKB/TrEMBL
  ENSCAFT00040037170.1 UniProtKB/TrEMBL
  ENSCAFT00040037286.1 UniProtKB/TrEMBL
  ENSCAFT00040037372.1 UniProtKB/TrEMBL
  ENSCAFT00845048259 ENTREZGENE
  ENSCAFT00845048259.1 UniProtKB/TrEMBL
  ENSCAFT00845048352 ENTREZGENE
  ENSCAFT00845048352.1 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
KEGG Report cfa:486596 UniProtKB/TrEMBL
NCBI Gene SLC38A2 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 2 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A8C0KDZ7 ENTREZGENE
  A0A8C0PIM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PNK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T6P7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T6Q8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TBV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q1D1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q2J2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NBK3 ENTREZGENE
UniProt Secondary A0A8P0NBK3 UniProtKB/TrEMBL
VGNC ID VGNC:46393 ENTREZGENE