SLC38A2 (solute carrier family 38 member 2) - Rat Genome Database

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Gene: SLC38A2 (solute carrier family 38 member 2) Sus scrofa
Analyze
Symbol: SLC38A2
Name: solute carrier family 38 member 2
RGD ID: 14235580
Description: ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); alanine:sodium symporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import (ortholog); amino acid transport (ortholog); ASSOCIATED WITH Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); Fetal Growth Retardation (ortholog); FOUND IN axon (ortholog); brush border (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: SNAT2; sodium-coupled neutral amino acid symporter 2; sodium-coupled neutral amino acid transporter 2; sodium-dependent neutral amino acid transporter-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,113,494 - 77,127,650 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,113,491 - 77,127,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2580,036,344 - 80,050,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:26107628   PMID:30032202  


Genomics

Comparative Map Data
SLC38A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,113,494 - 77,127,650 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,113,491 - 77,127,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2580,036,344 - 80,050,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,358,188 - 46,372,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,358,188 - 46,372,773 (-)EnsemblGRCh38hg38GRCh38
GRCh371246,751,971 - 46,766,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,038,238 - 45,052,814 (-)NCBINCBI36Build 36hg18NCBI36
Build 341245,038,238 - 45,052,814NCBI
Celera1245,549,292 - 45,563,966 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1243,783,294 - 43,797,966 (-)NCBIHuRef
CHM1_11246,717,042 - 46,731,717 (-)NCBICHM1_1
T2T-CHM13v2.01246,317,747 - 46,332,332 (-)NCBIT2T-CHM13v2.0
Slc38a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,585,267 - 96,597,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,585,273 - 96,597,611 (-)EnsemblGRCm39 Ensembl
GRCm381596,687,392 - 96,699,728 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,687,392 - 96,699,730 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,517,823 - 96,530,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,515,426 - 96,527,732 (-)NCBIMGSCv36mm8
Celera1598,833,619 - 98,845,915 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.6NCBI
Slc38a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,730,450 - 129,742,619 (-)NCBIGRCr8
mRatBN7.27127,851,267 - 127,863,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,851,267 - 127,863,436 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,652,230 - 129,664,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,877,742 - 131,889,909 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,795,866 - 131,808,034 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,088,654 - 138,100,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,088,649 - 138,100,841 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,716,131 - 137,728,346 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,365,172 - 135,377,341 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,441,608 - 135,453,778 (-)NCBI
Celera7124,355,437 - 124,367,606 (-)NCBICelera
Cytogenetic Map7q35NCBI
Slc38a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,516,039 - 5,531,758 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,517,323 - 5,530,055 (-)NCBIChiLan1.0ChiLan1.0
SLC38A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,794,056 - 47,808,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,790,814 - 47,805,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,359,637 - 42,374,251 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,230,007 - 43,244,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,230,007 - 43,244,343 (+)Ensemblpanpan1.1panPan2
SLC38A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,056,289 - 8,068,988 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,018,880 - 8,066,331 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,238,710 - 38,252,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,254,344 - 8,268,583 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,254,335 - 8,268,583 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,062,404 - 8,076,598 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,101,404 - 8,115,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,478,220 - 38,492,460 (-)NCBIUU_Cfam_GSD_1.0
Slc38a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,607,736 - 68,620,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,543,820 - 4,557,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,543,845 - 4,557,118 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,580,934 - 42,595,484 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,580,913 - 42,595,484 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037203,832,120 - 203,846,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248165,888,414 - 5,902,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248165,888,447 - 5,902,009 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC38A2
195 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000000877   ⟹   ENSSSCP00000000860
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl577,113,494 - 77,127,650 (-)Ensembl
RefSeq Acc Id: NM_001317081   ⟹   NP_001304010
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1577,116,414 - 77,126,143 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003126626   ⟹   XP_003126674
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1577,113,491 - 77,127,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997964   ⟹   XP_013853418
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1577,113,807 - 77,127,650 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003126674   ⟸   XM_003126626
- Peptide Label: isoform X1
- UniProtKB: K9J4Q4 (UniProtKB/TrEMBL),   A0A8D0TQE1 (UniProtKB/TrEMBL),   R9XZ29 (UniProtKB/TrEMBL),   A0A4X1TR27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853418   ⟸   XM_013997964
- Peptide Label: isoform X2
- UniProtKB: A0A288CFU8 (UniProtKB/TrEMBL),   A0A8D0R082 (UniProtKB/TrEMBL),   A0A4X1TL88 (UniProtKB/TrEMBL),   A0A8D1GA70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001304010   ⟸   NM_001317081
- UniProtKB: K9J4Q4 (UniProtKB/TrEMBL),   A0A8D0TQE1 (UniProtKB/TrEMBL),   R9XZ29 (UniProtKB/TrEMBL),   A0A4X1TR27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000000860   ⟸   ENSSSCT00000000877

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000808 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015028894 UniProtKB/TrEMBL
  ENSSSCG00025015858 UniProtKB/TrEMBL
  ENSSSCG00030006112 UniProtKB/TrEMBL
  ENSSSCG00035058883 UniProtKB/TrEMBL
  ENSSSCG00040018260 UniProtKB/TrEMBL
  ENSSSCG00045001530 UniProtKB/TrEMBL
  ENSSSCG00050035061 UniProtKB/TrEMBL
  ENSSSCG00055008758 UniProtKB/TrEMBL
  ENSSSCG00060046979 UniProtKB/TrEMBL
  ENSSSCG00065014246 UniProtKB/TrEMBL
  ENSSSCG00070010941 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000877 ENTREZGENE
  ENSSSCT00000000877.5 UniProtKB/TrEMBL
  ENSSSCT00015038329.1 UniProtKB/TrEMBL
  ENSSSCT00015038459.1 UniProtKB/TrEMBL
  ENSSSCT00025021288.1 UniProtKB/TrEMBL
  ENSSSCT00025021302.1 UniProtKB/TrEMBL
  ENSSSCT00030008258.1 UniProtKB/TrEMBL
  ENSSSCT00030008274.1 UniProtKB/TrEMBL
  ENSSSCT00035078841.1 UniProtKB/TrEMBL
  ENSSSCT00035078852.1 UniProtKB/TrEMBL
  ENSSSCT00040024715.1 UniProtKB/TrEMBL
  ENSSSCT00045002452.1 UniProtKB/TrEMBL
  ENSSSCT00045002469.1 UniProtKB/TrEMBL
  ENSSSCT00050047128.1 UniProtKB/TrEMBL
  ENSSSCT00050047136.1 UniProtKB/TrEMBL
  ENSSSCT00055017246.1 UniProtKB/TrEMBL
  ENSSSCT00055017312.1 UniProtKB/TrEMBL
  ENSSSCT00060063798.1 UniProtKB/TrEMBL
  ENSSSCT00065018949.1 UniProtKB/TrEMBL
  ENSSSCT00065018958.1 UniProtKB/TrEMBL
  ENSSSCT00070021263.1 UniProtKB/TrEMBL
  ENSSSCT00070021332.1 UniProtKB/TrEMBL
  ENSSSCT00070021353.1 UniProtKB/TrEMBL
  ENSSSCT00070021360.1 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
KEGG Report ssc:100525644 UniProtKB/TrEMBL
NCBI Gene SLC38A2 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 2 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A288CFU8 ENTREZGENE
  A0A4X1TL88 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TN37_PIG UniProtKB/TrEMBL
  A0A4X1TN94_PIG UniProtKB/TrEMBL
  A0A4X1TR27 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QYQ9_PIG UniProtKB/TrEMBL
  A0A8D0R082 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TQE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U0D6_PIG UniProtKB/TrEMBL
  A0A8D1GA70 ENTREZGENE, UniProtKB/TrEMBL
  K9J4Q4 ENTREZGENE, UniProtKB/TrEMBL
  R9XZ29 ENTREZGENE
UniProt Secondary A0A288CFU8 UniProtKB/TrEMBL
  R9XZ29 UniProtKB/TrEMBL
VGNC ID VGNC:93094 ENTREZGENE