SLC38A2 (solute carrier family 38 member 2) - Rat Genome Database

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Gene: SLC38A2 (solute carrier family 38 member 2) Pan paniscus
Analyze
Symbol: SLC38A2
Name: solute carrier family 38 member 2
RGD ID: 11964478
Description: ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); alanine:sodium symporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import (ortholog); amino acid transport (ortholog); ASSOCIATED WITH Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); Fetal Growth Retardation (ortholog); FOUND IN axon (ortholog); brush border (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Amino acid transporter A2; SNAT2; sodium-coupled neutral amino acid symporter 2; Sodium-coupled neutral amino acid transporter 2; System A amino acid transporter 2; System A transporter 1; System N amino acid transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,794,056 - 47,808,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,790,814 - 47,805,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,359,637 - 42,374,251 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,230,007 - 43,244,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,230,007 - 43,244,343 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:18689901   PMID:30032202  


Genomics

Comparative Map Data
SLC38A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,794,056 - 47,808,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,790,814 - 47,805,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,359,637 - 42,374,251 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,230,007 - 43,244,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,230,007 - 43,244,343 (+)Ensemblpanpan1.1panPan2
SLC38A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,358,188 - 46,372,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,358,188 - 46,372,773 (-)EnsemblGRCh38hg38GRCh38
GRCh371246,751,971 - 46,766,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,038,238 - 45,052,814 (-)NCBINCBI36Build 36hg18NCBI36
Build 341245,038,238 - 45,052,814NCBI
Celera1245,549,292 - 45,563,966 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1243,783,294 - 43,797,966 (-)NCBIHuRef
CHM1_11246,717,042 - 46,731,717 (-)NCBICHM1_1
T2T-CHM13v2.01246,317,747 - 46,332,332 (-)NCBIT2T-CHM13v2.0
Slc38a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,585,267 - 96,597,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,585,273 - 96,597,611 (-)EnsemblGRCm39 Ensembl
GRCm381596,687,392 - 96,699,728 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,687,392 - 96,699,730 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,517,823 - 96,530,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,515,426 - 96,527,732 (-)NCBIMGSCv36mm8
Celera1598,833,619 - 98,845,915 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.6NCBI
Slc38a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,730,450 - 129,742,619 (-)NCBIGRCr8
mRatBN7.27127,851,267 - 127,863,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,851,267 - 127,863,436 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,652,230 - 129,664,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,877,742 - 131,889,909 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,795,866 - 131,808,034 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,088,654 - 138,100,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,088,649 - 138,100,841 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,716,131 - 137,728,346 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,365,172 - 135,377,341 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,441,608 - 135,453,778 (-)NCBI
Celera7124,355,437 - 124,367,606 (-)NCBICelera
Cytogenetic Map7q35NCBI
Slc38a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,516,039 - 5,531,758 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,517,323 - 5,530,055 (-)NCBIChiLan1.0ChiLan1.0
SLC38A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,056,289 - 8,068,988 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,018,880 - 8,066,331 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,238,710 - 38,252,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,254,344 - 8,268,583 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,254,335 - 8,268,583 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,062,404 - 8,076,598 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,101,404 - 8,115,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,478,220 - 38,492,460 (-)NCBIUU_Cfam_GSD_1.0
Slc38a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,607,736 - 68,620,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,543,820 - 4,557,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,543,845 - 4,557,118 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,113,494 - 77,127,650 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,113,491 - 77,127,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2580,036,344 - 80,050,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,580,934 - 42,595,484 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,580,913 - 42,595,484 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037203,832,120 - 203,846,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248165,888,414 - 5,902,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248165,888,447 - 5,902,009 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000038003   ⟹   ENSPPAP00000015313
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1243,230,007 - 43,244,343 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000038007   ⟹   ENSPPAP00000015317
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1243,230,013 - 43,244,343 (+)Ensembl
RefSeq Acc Id: XM_003825763   ⟹   XP_003825811
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21047,794,056 - 47,808,779 (+)NCBI
NHGRI_mPanPan11247,790,814 - 47,805,537 (+)NCBI
Mhudiblu_PPA_v01242,359,637 - 42,374,251 (+)NCBI
PanPan1.11243,230,013 - 43,244,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055095726   ⟹   XP_054951701
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21047,795,771 - 47,808,779 (+)NCBI
NHGRI_mPanPan11247,792,406 - 47,805,537 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003825811 (Get FASTA)   NCBI Sequence Viewer  
  XP_054951701 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1YG32 (Get FASTA)   NCBI Sequence Viewer  
  ABM54257 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000015313.1
  ENSPPAP00000015317
  ENSPPAP00000015317.1
Reference Protein Sequences
RefSeq Acc Id: XP_003825811   ⟸   XM_003825763
- Peptide Label: isoform X1
- UniProtKB: A1YG32 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSPPAP00000015317   ⟸   ENSPPAT00000038007
RefSeq Acc Id: ENSPPAP00000015313   ⟸   ENSPPAT00000038003
RefSeq Acc Id: XP_054951701   ⟸   XM_055095726
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AIB3 (UniProtKB/TrEMBL)
Protein Domains
Amino acid transporter transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030800 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038003.1 UniProtKB/TrEMBL
  ENSPPAT00000038007.1 UniProtKB/Swiss-Prot
InterPro AA_transpt_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report pps:100975486 UniProtKB/Swiss-Prot
NCBI Gene SLC38A2 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R9AIB3 ENTREZGENE, UniProtKB/TrEMBL
  A1YG32 ENTREZGENE, UniProtKB/Swiss-Prot