TAP2 (transporter 2, ATP binding cassette subfamily B member) - Rat Genome Database

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Gene: TAP2 (transporter 2, ATP binding cassette subfamily B member) Canis lupus familiaris
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Symbol: TAP2
Name: transporter 2, ATP binding cassette subfamily B member (Ensembl:major histocompatibility complex, class II, DO beta)
RGD ID: 12086523
Description: ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); identical protein binding (ortholog); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I (ortholog); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent (ortholog); antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Alzheimer's disease (ortholog); ankylosing spondylitis (ortholog); FOUND IN endoplasmic reticulum (ortholog); MHC class I peptide loading complex (ortholog); TAP complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: antigen peptide transporter 2; APT2; ATP-binding cassette sub-family B (MDR/TAP); transporter 2, ATP-binding cassette, sub-family B (MDR-TAP); transporter associated with antigen presentation 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,407,512 - 2,417,469 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,378,126 - 2,432,303 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,489,442 - 2,499,082 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0122,689,106 - 2,699,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,652,372 - 2,699,034 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,406,835 - 2,416,483 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,488,331 - 2,497,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,562,598 - 2,572,236 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,407,512 - 2,417,469 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,378,126 - 2,432,303 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,489,442 - 2,499,082 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0122,689,106 - 2,699,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,652,372 - 2,699,034 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,406,835 - 2,416,483 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,488,331 - 2,497,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,562,598 - 2,572,236 (-)NCBIUU_Cfam_GSD_1.0
TAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,821,831 - 32,838,739 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,821,833 - 32,838,739 (-)EnsemblGRCh38hg38GRCh38
GRCh37632,789,608 - 32,806,516 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,897,588 - 32,914,525 (-)NCBINCBI36Build 36hg18NCBI36
Build 34632,897,587 - 32,914,482NCBI
Celera634,338,665 - 34,355,440 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,531,964 - 32,548,753 (-)NCBIHuRef
CHM1_1632,790,604 - 32,807,372 (-)NCBICHM1_1
T2T-CHM13v2.0632,643,187 - 32,660,143 (-)NCBIT2T-CHM13v2.0
Tap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,423,453 - 34,435,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,422,501 - 34,435,295 (+)EnsemblGRCm39 Ensembl
GRCm381734,204,479 - 34,216,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,203,527 - 34,216,321 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,341,424 - 34,353,266 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,814,778 - 33,826,596 (+)NCBIMGSCv36mm8
Celera1736,957,240 - 36,969,164 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Tap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,638,257 - 4,652,296 (-)NCBIGRCr8
mRatBN7.2204,636,347 - 4,650,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,636,357 - 4,650,407 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,388,631 - 5,403,107 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,750,374 - 4,764,850 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,233,719 - 5,246,401 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,995,544 - 4,009,587 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,198,258 - 5,212,624 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,995,544 - 4,009,587 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,075,031 - 6,089,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0207,259,226 - 7,273,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,770,446 - 4,784,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,770,672 - 4,784,715 (-)NCBI
Celera206,237,501 - 6,251,447 (-)NCBICelera
Cytogenetic Map20p12NCBI
Tap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,477,341 - 1,498,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,480,217 - 1,499,032 (-)NCBIChiLan1.0ChiLan1.0
TAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,300,349 - 47,313,984 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,171,904 - 43,185,535 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,394,586 - 32,408,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,513,321 - 33,523,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,507,332 - 33,523,750 (-)Ensemblpanpan1.1panPan2
Tap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,036,847 - 38,046,599 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,913,663 - 25,923,427 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,913,699 - 25,923,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,045,685 - 25,056,300 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1725,045,085 - 25,056,915 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,412,165 - 29,423,473 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,266,870 - 39,277,658 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604432,614,899 - 32,625,447 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,827,706 - 23,837,356 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,827,782 - 23,845,690 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAP2
188 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001284495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005627192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005627193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ630364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN656408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00845031676   ⟹   ENSCAFP00845024795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl122,652,372 - 2,698,732 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031849   ⟹   ENSCAFP00845024921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl122,653,985 - 2,659,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031911   ⟹   ENSCAFP00845024956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl122,685,643 - 2,699,034 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031999   ⟹   ENSCAFP00845025024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl122,689,334 - 2,698,986 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032065   ⟹   ENSCAFP00845025072
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl122,689,340 - 2,698,985 (-)Ensembl
RefSeq Acc Id: NM_001284495   ⟹   NP_001271424
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1122,407,775 - 2,417,413 (-)NCBI
Dog10K_Boxer_Tasha122,489,442 - 2,499,082 (-)NCBI
ROS_Cfam_1.0122,689,369 - 2,699,019 (-)NCBI
UMICH_Zoey_3.1122,406,835 - 2,416,483 (-)NCBI
UNSW_CanFamBas_1.0122,488,331 - 2,497,947 (-)NCBI
UU_Cfam_GSD_1.0122,562,598 - 2,572,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038682719   ⟹   XP_038538647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0122,689,106 - 2,699,061 (-)NCBI
RefSeq Acc Id: XM_038682720   ⟹   XP_038538648
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0122,689,106 - 2,699,012 (-)NCBI
RefSeq Acc Id: XM_038682721   ⟹   XP_038538649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0122,689,106 - 2,698,756 (-)NCBI
RefSeq Acc Id: NP_001271424   ⟸   NM_001284495
- Peptide Label: precursor
- UniProtKB: H8ZYY8 (UniProtKB/TrEMBL),   A0A8C0T7U4 (UniProtKB/TrEMBL),   Q5W417 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038538647   ⟸   XM_038682719
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P4Y2 (UniProtKB/TrEMBL),   A0A8C0T7U4 (UniProtKB/TrEMBL),   Q5W417 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538648   ⟸   XM_038682720
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P4Y2 (UniProtKB/TrEMBL),   A0A8C0T7U4 (UniProtKB/TrEMBL),   Q5W417 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538649   ⟸   XM_038682721
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P4Y2 (UniProtKB/TrEMBL),   A0A8C0T7U4 (UniProtKB/TrEMBL),   Q5W417 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025024   ⟸   ENSCAFT00845031999
RefSeq Acc Id: ENSCAFP00845024956   ⟸   ENSCAFT00845031911
RefSeq Acc Id: ENSCAFP00845024921   ⟸   ENSCAFT00845031849
RefSeq Acc Id: ENSCAFP00845024795   ⟸   ENSCAFT00845031676
RefSeq Acc Id: ENSCAFP00845025072   ⟸   ENSCAFT00845032065

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000832 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014953 UniProtKB/TrEMBL
  ENSCAFG00040019658 UniProtKB/TrEMBL
  ENSCAFG00845017879 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001291.5 UniProtKB/TrEMBL
  ENSCAFT00000064683.2 UniProtKB/TrEMBL
  ENSCAFT00000078769.2 UniProtKB/TrEMBL
  ENSCAFT00000081997.2 UniProtKB/TrEMBL
  ENSCAFT00000089159.2 UniProtKB/TrEMBL
  ENSCAFT00000097353.1 UniProtKB/TrEMBL
  ENSCAFT00000105384.1 UniProtKB/TrEMBL
  ENSCAFT00030027645.1 UniProtKB/TrEMBL
  ENSCAFT00040036398.1 UniProtKB/TrEMBL
  ENSCAFT00845031676 ENTREZGENE
  ENSCAFT00845031676.1 UniProtKB/TrEMBL
  ENSCAFT00845031911 ENTREZGENE
  ENSCAFT00845031911.1 UniProtKB/TrEMBL
  ENSCAFT00845031999.1 UniProtKB/TrEMBL
  ENSCAFT00845032065 ENTREZGENE
  ENSCAFT00845032065.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_Tap-like UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Tap2/ABCB3 UniProtKB/TrEMBL
  Type_1_exporter UniProtKB/TrEMBL
KEGG Report cfa:474864 UniProtKB/TrEMBL
NCBI Gene TAP2 ENTREZGENE
PANTHER ATP BINDING CASSETTE SUBFAMILY B MEMBER 9 UniProtKB/TrEMBL
  ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PIRSF ABC_prm/ATPase_B UniProtKB/TrEMBL
PRINTS TAP1PROTEIN UniProtKB/TrEMBL
  TAP2PROTEIN UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A8C0T7U4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P1Z7_CANLF UniProtKB/TrEMBL
  A0A8I3P223_CANLF UniProtKB/TrEMBL
  A0A8I3P4Y2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P5M6_CANLF UniProtKB/TrEMBL
  A0A8P0N407_CANLF UniProtKB/TrEMBL
  A0A8P0PM98_CANLF UniProtKB/TrEMBL
  A0A8P0T934_CANLF UniProtKB/TrEMBL
  A0A8P0TBZ0_CANLF UniProtKB/TrEMBL
  A0A8P0TEB4_CANLF UniProtKB/TrEMBL
  A0A8P0TG65_CANLF UniProtKB/TrEMBL
  H8ZYY8 ENTREZGENE, UniProtKB/TrEMBL
  H8ZYY9_CANLF UniProtKB/TrEMBL
  H8ZYZ0_CANLF UniProtKB/TrEMBL
  H8ZYZ1_CANLF UniProtKB/TrEMBL
  H8ZYZ2_CANLF UniProtKB/TrEMBL
  H8ZYZ3_CANLF UniProtKB/TrEMBL
  H8ZYZ4_CANLF UniProtKB/TrEMBL
  H8ZYZ5_CANLF UniProtKB/TrEMBL
  H8ZYZ6_CANLF UniProtKB/TrEMBL
  Q5W417 ENTREZGENE, UniProtKB/TrEMBL