SLC25A11 (solute carrier family 25 member 11) - Rat Genome Database

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Gene: SLC25A11 (solute carrier family 25 member 11) Pan paniscus
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Symbol: SLC25A11
Name: solute carrier family 25 member 11
RGD ID: 11946600
Description: ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (inferred); gluconeogenesis (inferred); malate transmembrane transport (inferred); PARTICIPATES IN fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; glycogen storage disease type Ia pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); congenital myasthenic syndrome 4A (ortholog); Paragangliomas 6 (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,547,345 - 12,550,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,515,703 - 14,518,345 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,985,477 - 4,988,348 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,973,000 - 4,975,878 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,973,000 - 4,975,878 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC25A11Bonobocongenital myasthenic syndrome 4A  ISOSLC25A11 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital myasthenic syndrome 4AClinVarPMID:28492532
SLC25A11BonoboParagangliomas 6  ISOSLC25A11 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:28492532 and PMID:29431636
SLC25A11Bonobospastic ataxia 2  ISOSLC25A11 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic ataxia 2ClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC25A11Bonoboadult respiratory distress syndrome  ISOSLC25A11 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25070658
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC25A11BonoboParagangliomas 6  ISOSLC25A11 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC25A11Bonoboalpha-ketoglutarate transport involved_inIEAGO:0015367150520179 GOCGO_REF:0000108
SLC25A11Bonobogluconeogenesis involved_inIEAUniProtKB:Q9CR62 and ensembl:ENSMUSP00000014750150520179 EnsemblGO_REF:0000107
SLC25A11Bonobomalate transmembrane transport involved_inIEAGO:0015367150520179 GOCGO_REF:0000108
SLC25A11Bonobomalate-aspartate shuttle involved_inIEAUniProtKB:Q02978 more ...150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC25A11Bonobomembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
SLC25A11Bonobomembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLC25A11Bonobomembrane located_inIEAUniRule:UR000413536150520179 UniProtGO_REF:0000104
SLC25A11Bonobomitochondrial inner membrane is_active_inIEAUniProtKB:Q9CR62 and ensembl:ENSMUSP00000014750150520179 EnsemblGO_REF:0000107
SLC25A11Bonobomitochondrion located_inISOSLC25A11 (Homo sapiens)9068941 PMID:34800366FlyBasePMID:34800366

Molecular Function

  

PMID:30032202  



SLC25A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,547,345 - 12,550,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,515,703 - 14,518,345 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,985,477 - 4,988,348 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,973,000 - 4,975,878 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,973,000 - 4,975,878 (-)Ensemblpanpan1.1panPan2
SLC25A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,937,130 - 4,940,046 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,937,130 - 4,940,053 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,840,425 - 4,843,341 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,781,349 - 4,784,063 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,781,348 - 4,784,063NCBI
Celera174,855,235 - 4,858,273 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,728,014 - 4,731,052 (-)NCBIHuRef
CHM1_1174,849,762 - 4,852,800 (-)NCBICHM1_1
T2T-CHM13v2.0174,827,477 - 4,830,394 (-)NCBIT2T-CHM13v2.0
Slc25a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,534,845 - 70,538,356 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,535,022 - 70,538,305 (-)EnsemblGRCm39 Ensembl
GRCm381170,644,019 - 70,647,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,644,196 - 70,647,479 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,457,698 - 70,460,495 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,460,391 - 70,463,188 (-)NCBIMGSCv36mm8
Celera1178,195,171 - 78,197,968 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Slc25a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,856,209 - 55,859,060 (-)NCBIGRCr8
mRatBN7.21055,357,590 - 55,360,441 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,357,597 - 55,360,410 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,038,200 - 60,041,051 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,526,706 - 59,529,557 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,025,812 - 55,028,663 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,265,903 - 57,268,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,265,704 - 57,268,081 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,011,497 - 57,013,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,524,561 - 57,526,676 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,538,183 - 57,540,299 (-)NCBI
Celera1054,503,719 - 54,505,834 (-)NCBICelera
Cytogenetic Map10q24NCBI
Slc25a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,349,378 - 10,355,368 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,349,378 - 10,352,649 (-)NCBIChiLan1.0ChiLan1.0
SLC25A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,676,826 - 31,680,138 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,675,740 - 31,679,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,814,780 - 31,818,149 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,780,196 - 31,783,564 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,780,804 - 31,783,559 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,746,734 - 31,750,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,706,440 - 31,709,808 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,882,816 - 31,886,184 (+)NCBIUU_Cfam_GSD_1.0
Slc25a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,127,002 - 53,129,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,770,964 - 2,776,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,770,969 - 2,773,973 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,970,806 - 51,975,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,970,794 - 51,973,668 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,039,520 - 54,042,613 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,418,555 - 4,421,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,416,259 - 4,421,162 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,212,060 - 17,215,298 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,795,083 - 8,797,882 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,795,077 - 8,797,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSPPAT00000060632   ⟹   ENSPPAP00000037730
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl174,973,000 - 4,975,878 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000060645   ⟹   ENSPPAP00000037743
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl174,973,432 - 4,975,601 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000060646   ⟹   ENSPPAP00000037744
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl174,973,432 - 4,975,601 (-)Ensembl
RefSeq Acc Id: XM_003810181   ⟹   XP_003810229
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,547,345 - 12,550,022 (-)NCBI
NHGRI_mPanPan11714,515,703 - 14,518,345 (-)NCBI
Mhudiblu_PPA_v0174,985,477 - 4,988,227 (-)NCBI
PanPan1.1174,973,000 - 4,975,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063598903   ⟹   XP_063454973
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,547,345 - 12,550,022 (-)NCBI
Protein RefSeqs XP_003810229 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037730.1
  ENSPPAP00000037743.1
  ENSPPAP00000037744.1
RefSeq Acc Id: XP_003810229   ⟸   XM_003810181
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C729 (UniProtKB/TrEMBL),   A0A2R9C9W5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000037730   ⟸   ENSPPAT00000060632
Ensembl Acc Id: ENSPPAP00000037743   ⟸   ENSPPAT00000060645
Ensembl Acc Id: ENSPPAP00000037744   ⟸   ENSPPAT00000060646
RefSeq Acc Id: XP_063454973   ⟸   XM_063598903
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C7I0 (UniProtKB/TrEMBL),   A0A2R9C9W5 (UniProtKB/TrEMBL)



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000041545 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060632.1 UniProtKB/TrEMBL
  ENSPPAT00000060645.1 UniProtKB/TrEMBL
  ENSPPAT00000060646.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mito_Metabolite_Transporter UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100981487 UniProtKB/TrEMBL
NCBI Gene SLC25A11 ENTREZGENE
PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A2R9C729 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C7I0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C9W5 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows