CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) - Rat Genome Database

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Gene: CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) Pan paniscus
Analyze
Symbol: CSGALNACT1
Name: chondroitin sulfate N-acetylgalactosaminyltransferase 1
RGD ID: 11701054
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (inferred); glucuronosyltransferase activity (inferred); INVOLVED IN cartilage development (ortholog); chondroitin sulfate metabolic process (ortholog); endochondral ossification (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 53 (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2737,883,225 - 38,236,716 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1813,608,924 - 13,962,206 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0818,626,998 - 18,980,416 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1815,576,416 - 15,929,342 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl815,576,416 - 15,904,123 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CSGALNACT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2737,883,225 - 38,236,716 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1813,608,924 - 13,962,206 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0818,626,998 - 18,980,416 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1815,576,416 - 15,929,342 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl815,576,416 - 15,904,123 (-)Ensemblpanpan1.1panPan2
CSGALNACT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38819,404,161 - 19,757,908 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl819,404,161 - 19,758,029 (-)EnsemblGRCh38hg38GRCh38
GRCh37819,261,672 - 19,615,419 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36819,305,952 - 19,584,374 (-)NCBINCBI36Build 36hg18NCBI36
Celera818,225,010 - 18,503,692 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef817,801,989 - 18,080,455 (-)NCBIHuRef
CHM1_1819,463,117 - 19,741,804 (-)NCBICHM1_1
T2T-CHM13v2.0819,669,045 - 20,022,919 (-)NCBIT2T-CHM13v2.0
Csgalnact1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,809,433 - 69,188,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl868,809,433 - 69,187,798 (-)EnsemblGRCm39 Ensembl
GRCm38868,356,781 - 68,735,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl868,356,781 - 68,735,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv37870,880,682 - 71,259,041 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36871,285,783 - 71,664,123 (-)NCBIMGSCv36mm8
Celera870,901,764 - 71,270,170 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map833.88NCBI
Csgalnact1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81625,761,946 - 26,097,306 (+)NCBIGRCr8
mRatBN7.21620,995,210 - 21,330,586 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1621,235,784 - 21,330,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1624,611,968 - 24,709,528 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01628,042,972 - 28,141,568 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01623,977,291 - 24,074,861 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01622,704,318 - 23,075,071 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1622,979,444 - 23,074,798 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,733,680 - 22,963,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41622,852,516 - 22,947,139 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11622,852,484 - 22,946,543 (+)NCBI
Celera1621,395,359 - 21,488,688 (+)NCBICelera
Cytogenetic Map16p14NCBI
Csgalnact1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540343,178,520 - 43,478,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540343,178,520 - 43,347,121 (-)NCBIChiLan1.0ChiLan1.0
CSGALNACT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11622,219,324 - 22,546,501 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1622,219,861 - 22,392,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1622,724,714 - 23,051,863 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01623,960,246 - 24,287,450 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1623,961,632 - 24,286,927 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11622,317,927 - 22,427,544 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01622,903,836 - 23,231,159 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01622,955,384 - 23,282,687 (-)NCBIUU_Cfam_GSD_1.0
Csgalnact1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494314,762,965 - 14,931,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365553,637,630 - 3,807,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365553,639,459 - 3,807,483 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSGALNACT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1712,428,893 - 12,498,585 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11712,145,141 - 12,498,777 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21710,059,885 - 10,154,331 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSGALNACT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1817,494,312 - 17,851,497 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl817,494,187 - 17,695,037 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605224,650,059 - 24,756,656 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csgalnact1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475815,200,713 - 15,367,236 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475815,200,726 - 15,517,146 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000019868   ⟹   ENSPPAP00000004301
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl815,576,416 - 15,704,247 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000019887   ⟹   ENSPPAP00000004305
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl815,578,035 - 15,904,123 (-)Ensembl
RefSeq Acc Id: XM_003823628   ⟹   XP_003823676
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,086,335 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,807,251 (-)NCBI
Mhudiblu_PPA_v0818,626,998 - 18,825,278 (-)NCBI
PanPan1.1815,576,416 - 15,774,915 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008977290   ⟹   XP_008975538
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,716 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,962,206 (-)NCBI
Mhudiblu_PPA_v0818,626,998 - 18,980,416 (-)NCBI
PanPan1.1815,576,416 - 15,929,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034965728   ⟹   XP_034821619
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,472 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,962,031 (-)NCBI
Mhudiblu_PPA_v0818,626,998 - 18,979,713 (-)NCBI
RefSeq Acc Id: XM_034965729   ⟹   XP_034821620
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,472 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,962,031 (-)NCBI
Mhudiblu_PPA_v0818,626,998 - 18,979,713 (-)NCBI
RefSeq Acc Id: XM_055116343   ⟹   XP_054972318
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,650 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,962,162 (-)NCBI
RefSeq Acc Id: XM_055116345   ⟹   XP_054972320
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,086,660 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,812,351 (-)NCBI
RefSeq Acc Id: XM_055116346   ⟹   XP_054972321
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,476 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,962,034 (-)NCBI
RefSeq Acc Id: XM_057302983   ⟹   XP_057158966
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,470 (-)NCBI
NHGRI_mPanPan1813,608,924 - 13,962,029 (-)NCBI
RefSeq Acc Id: XM_063607131   ⟹   XP_063463201
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,470 (-)NCBI
RefSeq Acc Id: XM_063607132   ⟹   XP_063463202
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,086,346 (-)NCBI
RefSeq Acc Id: XM_063607133   ⟹   XP_063463203
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2737,883,225 - 38,236,476 (-)NCBI
RefSeq Acc Id: XP_008975538   ⟸   XM_008977290
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003823676   ⟸   XM_003823628
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034821620   ⟸   XM_034965729
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821619   ⟸   XM_034965728
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000004305   ⟸   ENSPPAT00000019887
Ensembl Acc Id: ENSPPAP00000004301   ⟸   ENSPPAT00000019868
RefSeq Acc Id: XP_054972318   ⟸   XM_055116343
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054972321   ⟸   XM_055116346
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054972320   ⟸   XM_055116345
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057158966   ⟸   XM_057302983
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463203   ⟸   XM_063607133
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463201   ⟸   XM_063607131
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463202   ⟸   XM_063607132
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZH43 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000018139 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000019868.1 UniProtKB/TrEMBL
  ENSPPAT00000019887.1 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
  CS_glycosyltransferase UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report pps:100987599 UniProtKB/TrEMBL
NCBI Gene CSGALNACT1 ENTREZGENE
PANTHER CHONDROITIN SULFATE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 UniProtKB/TrEMBL
  CHONDROITIN SYNTHASE UniProtKB/TrEMBL
Pfam CHGN UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A2R8ZH43 ENTREZGENE, UniProtKB/TrEMBL